Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 H 1.08999 * 109.47297 * 305.93182 * 3 2 1 5 5 C 1.52997 * 109.47245 * 65.93281 * 3 2 1 6 6 C 1.50703 * 109.47100 * 186.88511 * 5 3 2 7 7 C 1.38230 * 120.00243 * 262.18547 * 6 5 3 8 8 C 1.38238 * 120.00179 * 179.76345 * 7 6 5 9 9 C 1.38239 * 119.99912 * 0.51253 * 8 7 6 10 10 N 1.48014 * 119.99856 * 179.71981 * 9 8 7 11 11 O 1.21800 * 119.99692 * 180.02562 * 10 9 8 12 12 O 1.21802 * 120.00239 * 0.02562 * 10 9 8 13 13 C 1.38232 * 119.99814 * 359.74187 * 9 8 7 14 14 C 1.38237 * 120.00093 * 0.02562 * 13 9 8 15 15 C 1.50702 * 109.47087 * 185.93303 * 3 2 1 16 16 O 1.21289 * 119.99861 * 239.99679 * 15 3 2 17 17 N 1.34772 * 120.00319 * 59.99893 * 15 3 2 18 18 C 1.46501 * 120.00517 * 179.97438 * 17 15 3 19 19 C 1.52993 * 109.47360 * 179.97438 * 18 17 15 20 20 C 1.50702 * 109.47161 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99907 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99877 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46879 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47245 * 119.99676 * 24 22 20 27 27 H 1.48504 * 109.46655 * 239.99699 * 24 22 20 28 28 H 1.08998 * 109.46810 * 54.59361 * 1 2 3 29 29 H 1.09003 * 109.46520 * 174.58683 * 1 2 3 30 30 H 1.08999 * 109.47462 * 294.58684 * 1 2 3 31 31 H 1.09000 * 109.47862 * 239.99771 * 2 1 3 32 32 H 1.09002 * 109.47205 * 119.99300 * 2 1 3 33 33 H 1.08999 * 109.47149 * 306.88293 * 5 3 2 34 34 H 1.08994 * 109.47550 * 66.88772 * 5 3 2 35 35 H 1.08003 * 119.99869 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.99982 * 180.23130 * 8 7 6 37 37 H 1.08005 * 120.00004 * 179.97438 * 13 9 8 38 38 H 1.08005 * 120.00018 * 179.97438 * 14 13 9 39 39 H 0.97005 * 119.99776 * 0.02562 * 17 15 3 40 40 H 1.08992 * 109.46998 * 300.00173 * 18 17 15 41 41 H 1.08999 * 109.46647 * 60.00316 * 18 17 15 42 42 H 1.09001 * 109.47582 * 300.00447 * 19 18 17 43 43 H 1.09001 * 109.46988 * 60.00196 * 19 18 17 44 44 H 0.96995 * 120.00026 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5925 1.9861 -0.8321 5 6 1.6553 2.1194 1.3171 6 6 2.0065 3.5835 1.2507 7 6 3.1872 4.0370 1.8083 8 6 3.5117 5.3792 1.7431 9 6 2.6503 6.2695 1.1296 10 7 2.9947 7.7076 1.0653 11 8 2.2355 8.4920 0.5251 12 8 4.0373 8.1065 1.5524 13 6 1.4670 5.8167 0.5766 14 6 1.1449 4.4738 0.6376 15 6 3.5398 1.4451 -0.1469 16 8 4.2329 1.9397 0.7169 17 7 4.1110 0.8978 -1.2380 18 6 5.5690 0.9008 -1.3811 19 6 5.9537 0.2232 -2.6977 20 6 7.4536 0.2257 -2.8446 21 1 8.0707 0.6661 -2.0755 22 6 8.0379 -0.3343 -3.9608 23 7 7.2864 -0.8711 -4.8971 24 14 9.8970 -0.3318 -4.1425 25 1 10.5089 0.3271 -2.9607 26 1 10.3869 -1.7303 -4.2389 27 1 10.2731 0.4104 -5.3725 28 1 -0.3633 0.5954 -0.8376 29 1 -0.3632 -1.0231 -0.0970 30 1 -0.3634 0.4276 0.9345 31 1 1.8935 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 0.5835 2.0100 1.4824 34 1 2.1991 1.6523 2.1381 35 1 3.8583 3.3421 2.2911 36 1 4.4360 5.7330 2.1755 37 1 0.7938 6.5124 0.0976 38 1 0.2202 4.1201 0.2059 39 1 3.5567 0.5026 -1.9290 40 1 5.9320 1.9285 -1.3813 41 1 6.0168 0.3575 -0.5489 42 1 5.5908 -0.8046 -2.6971 43 1 5.5059 0.7661 -3.5301 44 1 7.6975 -1.2654 -5.6822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360796405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -44.391115 kcal Electronic energy + Delta-G solvation = -26333.742514 eV Core-core repulsion = 22446.327366 eV Total energy + Delta-G solvation = -3887.415147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23228 -40.40820 -39.12396 -36.62304 -35.98374 -34.99767 -33.13153 -32.65963 -31.53940 -29.95943 -29.32129 -26.95970 -25.12298 -24.20892 -23.35678 -22.10681 -21.77697 -20.98725 -19.75998 -19.40607 -18.73426 -17.58454 -17.23727 -16.57989 -16.37888 -15.56047 -15.37126 -15.13280 -14.72708 -14.63513 -14.45927 -14.10984 -13.96403 -13.54162 -13.35928 -12.87662 -12.69564 -12.34340 -12.27826 -12.11619 -12.00579 -11.66541 -11.39288 -11.29711 -11.27111 -11.20991 -11.14643 -11.08716 -11.07141 -10.67791 -10.42476 -9.87144 -9.61111 -9.54278 -9.40169 -9.15966 -8.63548 -8.44254 -6.15855 -4.18982 -0.26178 0.83264 1.25669 1.35032 2.81040 3.14166 3.24162 3.31937 3.36243 3.51823 4.18608 4.24539 4.35050 4.36245 4.47876 4.59987 4.74025 4.74954 4.83269 5.05732 5.10486 5.14106 5.18202 5.21547 5.37458 5.42497 5.52314 5.57885 5.65269 5.71902 5.75715 5.86114 5.96218 6.12567 6.17082 6.23608 6.24163 6.41173 6.63562 6.80169 7.42861 7.52400 7.57516 7.81729 7.87774 8.19799 8.50366 8.87140 9.46524 10.95705 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.003088 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.771712 B = 9063.945273 C =11127.075642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.106 4.106 4 H 0.098 0.902 5 C -0.070 4.070 6 C -0.028 4.028 7 C -0.077 4.077 8 C -0.060 4.060 9 C -0.051 4.051 10 N 0.031 4.969 11 O -0.169 6.169 12 O -0.164 6.164 13 C -0.062 4.062 14 C -0.121 4.121 15 C 0.507 3.493 16 O -0.549 6.549 17 N -0.719 5.719 18 C 0.122 3.878 19 C 0.013 3.987 20 C -0.522 4.522 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.896 3.104 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.397 0.603 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 5.136 12.249 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.127 4.127 4 H 0.116 0.884 5 C -0.108 4.108 6 C -0.029 4.029 7 C -0.095 4.095 8 C -0.079 4.079 9 C -0.134 4.134 10 N 0.549 4.451 11 O -0.384 6.384 12 O -0.380 6.380 13 C -0.081 4.081 14 C -0.140 4.140 15 C 0.292 3.708 16 O -0.428 6.428 17 N -0.368 5.368 18 C 0.000 4.000 19 C -0.025 4.025 20 C -0.561 4.561 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.791 4.716 12.711 22.368 hybrid contribution 0.939 0.178 -0.801 1.247 sum -16.852 4.893 11.910 21.208 Atomic orbital electron populations 1.21841 0.95004 1.02225 1.01982 1.21532 0.96468 0.93928 1.03559 1.21443 0.93723 0.98393 0.99140 0.88434 1.20652 1.02260 0.89888 0.97981 1.20349 0.93302 0.96310 0.92903 1.21460 0.96206 0.93578 0.98265 1.21161 0.98756 0.92796 0.95209 1.21149 1.00320 0.80306 1.11596 1.43680 0.99851 1.03595 0.97959 1.94512 1.47590 1.52138 1.44111 1.94540 1.13302 1.82527 1.47627 1.20951 0.94118 0.97006 0.96035 1.21077 1.00832 0.91369 1.00674 1.20477 0.89853 0.78230 0.82225 1.90599 1.64789 1.46066 1.41322 1.46364 1.09898 1.58806 1.21746 1.21721 0.76479 1.00870 1.00944 1.19320 0.97229 0.95792 0.90142 1.21074 0.91238 1.38444 1.05351 0.92227 1.24996 0.98549 0.95035 0.95675 1.69955 1.35211 1.38617 1.09465 0.86462 0.85152 0.77796 0.78215 1.19557 1.20882 1.20875 0.92384 0.92218 0.92409 0.90745 0.90996 0.89279 0.89172 0.82224 0.83197 0.83293 0.83858 0.76928 0.92668 0.92504 0.95971 0.96045 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.16 0.36 -0.51 16 2 C -0.12 -0.90 5.34 -26.73 -0.14 -1.04 16 3 C -0.11 -0.95 2.16 -91.77 -0.20 -1.15 16 4 H 0.10 0.78 8.13 -51.93 -0.42 0.36 16 5 C -0.07 -0.55 4.46 -27.88 -0.12 -0.68 16 6 C -0.03 -0.27 4.72 -104.62 -0.49 -0.76 16 7 C -0.08 -0.86 7.97 -39.58 -0.32 -1.17 16 8 C -0.06 -0.71 9.56 -39.58 -0.38 -1.09 16 9 C -0.05 -0.63 6.85 -79.95 -0.55 -1.17 16 10 N 0.03 0.45 4.45 33.96 0.15 0.60 16 11 O -0.17 -2.46 18.45 -29.46 -0.54 -3.01 16 12 O -0.16 -2.50 18.45 -29.46 -0.54 -3.05 16 13 C -0.06 -0.61 9.56 -39.58 -0.38 -0.99 16 14 C -0.12 -1.00 9.73 -39.58 -0.39 -1.38 16 15 C 0.51 7.05 6.92 -10.99 -0.08 6.97 16 16 O -0.55 -9.02 12.37 5.55 0.07 -8.95 16 17 N -0.72 -11.14 5.41 -60.30 -0.33 -11.47 16 18 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 19 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 20 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 24 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.27 6.71 -51.93 -0.35 -0.08 16 31 H 0.07 0.61 7.40 -51.93 -0.38 0.23 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.47 6.41 -51.93 -0.33 0.14 16 34 H 0.09 0.77 7.77 -51.93 -0.40 0.37 16 35 H 0.16 1.88 6.64 -52.48 -0.35 1.53 16 36 H 0.15 1.66 7.61 -52.48 -0.40 1.27 16 37 H 0.15 1.25 7.61 -52.48 -0.40 0.85 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.40 5.36 7.83 -40.82 -0.32 5.04 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -31.70 372.60 -9.41 -41.11 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.28 Total: 1.37 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.26 Total: -13.37 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.56 Total: -35.81 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.02 Total: -15.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.70 -9.41 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360796405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.286 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds