Wall clock time and date at job start Tue Mar 31 2020 12:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47239 * 2 1 4 4 H 1.08997 * 109.47361 * 305.31575 * 3 2 1 5 5 C 1.53002 * 109.47319 * 185.31092 * 3 2 1 6 6 C 1.50707 * 109.46755 * 65.00252 * 5 3 2 7 7 C 1.38240 * 119.99696 * 269.72433 * 6 5 3 8 8 C 1.38236 * 119.99567 * 179.74114 * 7 6 5 9 9 C 1.38237 * 120.00001 * 0.55838 * 8 7 6 10 10 N 1.48019 * 120.00019 * 179.72061 * 9 8 7 11 11 O 1.21800 * 119.99944 * 179.97438 * 10 9 8 12 12 O 1.21799 * 119.99729 * 359.97438 * 10 9 8 13 13 C 1.38232 * 120.00146 * 359.69773 * 9 8 7 14 14 C 1.38232 * 120.00163 * 90.00380 * 6 5 3 15 15 C 1.50700 * 109.47000 * 65.31466 * 3 2 1 16 16 O 1.21284 * 120.00178 * 34.90197 * 15 3 2 17 17 N 1.34780 * 120.00094 * 214.89710 * 15 3 2 18 18 C 1.46501 * 119.99737 * 354.96700 * 17 15 3 19 19 C 1.46500 * 119.99976 * 174.96068 * 17 15 3 20 20 C 1.50693 * 109.46934 * 90.00512 * 19 17 15 21 21 H 1.08004 * 120.00174 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00042 * 179.97438 * 20 19 17 23 23 N 1.31511 * 119.99574 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47524 * 59.99794 * 24 22 20 26 26 H 1.48508 * 109.46919 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47128 * 299.99527 * 24 22 20 28 28 H 1.08996 * 109.46877 * 54.96731 * 1 2 3 29 29 H 1.08997 * 109.46830 * 294.96688 * 1 2 3 30 30 H 1.08995 * 109.47303 * 174.96671 * 1 2 3 31 31 H 1.09005 * 109.47101 * 120.00268 * 2 1 3 32 32 H 1.09003 * 109.46776 * 240.00035 * 2 1 3 33 33 H 1.08996 * 109.47302 * 185.00000 * 5 3 2 34 34 H 1.09000 * 109.47492 * 305.00647 * 5 3 2 35 35 H 1.08002 * 119.99943 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.00385 * 180.27748 * 8 7 6 37 37 H 1.07994 * 120.00211 * 179.97438 * 13 9 8 38 38 H 1.08003 * 119.99863 * 359.97438 * 14 6 5 39 39 H 1.08996 * 109.47129 * 94.60468 * 18 17 15 40 40 H 1.08998 * 109.46980 * 214.59904 * 18 17 15 41 41 H 1.09000 * 109.47339 * 334.60045 * 18 17 15 42 42 H 1.09002 * 109.46935 * 210.00313 * 19 17 15 43 43 H 1.08999 * 109.47082 * 330.00433 * 19 17 15 44 44 H 0.97003 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6011 1.9830 -0.8385 5 6 3.5642 1.4445 -0.1335 6 6 3.9514 0.8848 -1.4782 7 6 4.1772 -0.4713 -1.6233 8 6 4.5271 -0.9855 -2.8578 9 6 4.6625 -0.1420 -3.9447 10 7 5.0432 -0.6917 -5.2652 11 8 5.1620 0.0514 -6.2229 12 8 5.2376 -1.8871 -5.3941 13 6 4.4418 1.2147 -3.7983 14 6 4.0863 1.7281 -2.5651 15 6 1.6480 2.1138 1.2910 16 8 1.6213 1.4762 2.3224 17 7 1.3272 3.4228 1.2995 18 6 1.4654 4.2188 0.0773 19 6 0.8402 4.0497 2.5308 20 6 2.0081 4.5895 3.3155 21 1 3.0126 4.4772 2.9348 22 6 1.7941 5.2276 4.5189 23 7 0.5710 5.3647 4.9821 24 14 3.2417 5.8973 5.4912 25 1 3.9631 6.9056 4.6738 26 1 2.7481 6.5327 6.7394 27 1 4.1648 4.7856 5.8338 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3633 0.4338 0.9316 30 1 -0.3633 -1.0236 -0.0902 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.9354 2.4655 -0.0445 34 1 3.9989 0.8298 0.6547 35 1 4.0758 -1.1297 -0.7731 36 1 4.6992 -2.0455 -2.9723 37 1 4.5480 1.8737 -4.6473 38 1 3.9139 2.7882 -2.4507 39 1 0.5101 4.2486 -0.4467 40 1 1.7693 5.2329 0.3367 41 1 2.2195 3.7670 -0.5672 42 1 0.1629 4.8659 2.2796 43 1 0.3106 3.3094 3.1305 44 1 0.4204 5.8139 5.8285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360926330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:41 Heat of formation + Delta-G solvation = -28.290503 kcal Electronic energy + Delta-G solvation = -26764.169499 eV Core-core repulsion = 22877.452526 eV Total energy + Delta-G solvation = -3886.716972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40597 -40.36437 -39.20254 -36.79255 -35.65129 -34.89148 -32.74796 -32.62564 -31.78384 -29.92298 -28.05980 -26.74479 -25.80801 -24.23583 -23.75756 -23.12876 -21.95484 -21.00673 -19.63556 -18.88604 -18.32830 -17.75257 -16.99652 -16.62611 -16.05578 -15.86159 -15.40274 -15.12994 -14.74594 -14.37293 -14.26225 -14.04108 -13.83558 -13.36902 -13.25640 -12.83905 -12.32685 -12.24337 -12.14741 -12.11005 -11.88680 -11.83239 -11.64028 -11.41680 -11.37462 -11.34956 -11.16066 -11.01459 -10.91480 -10.76048 -10.59593 -10.22870 -9.76254 -9.72865 -9.64437 -8.93796 -8.50167 -7.74971 -6.11139 -4.16203 -0.44882 0.58685 1.06228 1.16155 2.87694 3.25603 3.27492 3.31295 3.34774 3.78999 4.00872 4.12465 4.22580 4.38908 4.44967 4.57599 4.69838 4.86955 4.93940 4.94722 5.19718 5.22863 5.28721 5.33878 5.37749 5.41447 5.47403 5.53696 5.54848 5.71790 5.80418 5.83709 5.93833 5.96438 5.99206 6.10154 6.20484 6.25966 6.32784 6.95862 7.34025 7.39674 7.43517 7.84299 8.15281 8.30713 8.81619 8.98495 9.48970 10.96969 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.002724 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.973722 B =10276.340006 C =10793.347244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.089 0.911 5 C -0.083 4.083 6 C -0.014 4.014 7 C -0.114 4.114 8 C -0.052 4.052 9 C -0.055 4.055 10 N 0.031 4.969 11 O -0.165 6.165 12 O -0.165 6.165 13 C -0.051 4.051 14 C -0.116 4.116 15 C 0.511 3.489 16 O -0.535 6.535 17 N -0.602 5.602 18 C 0.081 3.919 19 C 0.246 3.754 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.042 0.958 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -8.706 -17.018 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.107 0.893 5 C -0.120 4.120 6 C -0.015 4.015 7 C -0.132 4.132 8 C -0.071 4.071 9 C -0.138 4.138 10 N 0.549 4.451 11 O -0.380 6.380 12 O -0.381 6.381 13 C -0.070 4.070 14 C -0.135 4.135 15 C 0.296 3.704 16 O -0.411 6.411 17 N -0.333 5.333 18 C -0.063 4.063 19 C 0.127 3.873 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.880 -8.673 -15.664 18.558 hybrid contribution 0.854 0.440 0.133 0.970 sum 5.735 -8.233 -15.531 18.490 Atomic orbital electron populations 1.21770 0.95467 1.01504 1.02315 1.21519 0.96579 0.94322 1.02494 1.21436 0.94783 0.98321 0.98030 0.89317 1.20739 0.95211 1.03143 0.92916 1.20448 0.91429 0.93494 0.96101 1.21233 0.99738 0.95314 0.96941 1.21065 0.94411 1.01040 0.90607 1.21119 1.13971 0.95047 0.83651 1.43658 0.97702 1.00789 1.02931 1.94536 1.55361 1.57273 1.30853 1.94536 1.53798 0.98660 1.91062 1.21058 0.94077 0.92376 0.99475 1.21193 1.00264 1.01314 0.90714 1.20091 0.78328 0.82352 0.89583 1.90678 1.52532 1.64040 1.33898 1.48190 1.64202 1.08345 1.12602 1.21673 1.00018 0.97383 0.87225 1.19279 0.94957 0.93131 0.79931 1.21355 0.93350 1.36690 1.05148 0.92565 1.24938 0.95910 0.96034 0.97205 1.69915 1.19728 1.42956 1.20741 0.86568 0.82507 0.79074 0.79318 1.20250 1.21137 1.20172 0.93136 0.91915 0.92699 0.90341 0.91741 0.89210 0.88854 0.83229 0.82990 0.82961 0.83296 0.93660 0.90749 0.92495 0.95022 0.93999 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.65 37.16 0.36 -1.49 16 2 C -0.11 -1.28 4.90 -26.73 -0.13 -1.41 16 3 C -0.10 -1.28 1.35 -91.77 -0.12 -1.40 16 4 H 0.09 0.94 6.51 -51.93 -0.34 0.60 16 5 C -0.08 -0.84 4.64 -27.88 -0.13 -0.97 16 6 C -0.01 -0.12 4.71 -104.62 -0.49 -0.61 16 7 C -0.11 -0.86 7.88 -39.58 -0.31 -1.17 16 8 C -0.05 -0.42 9.56 -39.58 -0.38 -0.80 16 9 C -0.05 -0.53 6.85 -79.95 -0.55 -1.07 16 10 N 0.03 0.37 4.45 33.96 0.15 0.52 16 11 O -0.16 -2.06 18.45 -29.46 -0.54 -2.61 16 12 O -0.17 -2.07 18.45 -29.46 -0.54 -2.62 16 13 C -0.05 -0.41 9.56 -39.58 -0.38 -0.78 16 14 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 15 C 0.51 9.42 5.79 -10.98 -0.06 9.35 16 16 O -0.53 -12.35 15.60 5.55 0.09 -12.26 16 17 N -0.60 -11.67 2.86 -182.96 -0.52 -12.19 16 18 C 0.08 1.14 9.87 59.85 0.59 1.73 16 19 C 0.25 6.14 5.14 -5.20 -0.03 6.12 16 20 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 21 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 24 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.94 7.40 -51.93 -0.38 0.56 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 32 H 0.06 0.59 5.92 -51.93 -0.31 0.28 16 33 H 0.09 0.92 7.56 -51.93 -0.39 0.53 16 34 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.15 0.91 8.00 -52.49 -0.42 0.49 16 36 H 0.15 1.04 7.61 -52.49 -0.40 0.64 16 37 H 0.15 1.02 7.61 -52.49 -0.40 0.62 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.06 0.60 5.74 -51.93 -0.30 0.30 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -33.13 372.79 -8.70 -41.83 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.22 Total: -2.47 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.44 Total: -6.82 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.37 Total: -36.91 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.00 Total: -17.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.13 -8.70 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360926330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.544 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds