Wall clock time and date at job start Tue Mar 31 2020 12:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47239 * 2 1 4 4 H 1.08997 * 109.47361 * 305.31575 * 3 2 1 5 5 C 1.53002 * 109.47319 * 185.31092 * 3 2 1 6 6 C 1.50707 * 109.46755 * 65.00252 * 5 3 2 7 7 C 1.38240 * 119.99696 * 269.72433 * 6 5 3 8 8 C 1.38236 * 119.99567 * 179.74114 * 7 6 5 9 9 C 1.38237 * 120.00001 * 0.55838 * 8 7 6 10 10 N 1.48019 * 120.00019 * 179.72061 * 9 8 7 11 11 O 1.21800 * 119.99944 * 179.97438 * 10 9 8 12 12 O 1.21799 * 119.99729 * 359.97438 * 10 9 8 13 13 C 1.38232 * 120.00146 * 359.69773 * 9 8 7 14 14 C 1.38232 * 120.00163 * 90.00380 * 6 5 3 15 15 C 1.50700 * 109.47000 * 65.31466 * 3 2 1 16 16 O 1.21284 * 120.00178 * 34.90197 * 15 3 2 17 17 N 1.34780 * 120.00094 * 214.89710 * 15 3 2 18 18 C 1.46501 * 119.99737 * 354.96700 * 17 15 3 19 19 C 1.46500 * 119.99976 * 174.96068 * 17 15 3 20 20 C 1.50693 * 109.46934 * 90.00512 * 19 17 15 21 21 H 1.08004 * 120.00174 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00042 * 179.97438 * 20 19 17 23 23 N 1.31511 * 119.99574 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47524 * 59.99794 * 24 22 20 26 26 H 1.48508 * 109.46919 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47128 * 299.99527 * 24 22 20 28 28 H 1.08996 * 109.46877 * 54.96731 * 1 2 3 29 29 H 1.08997 * 109.46830 * 294.96688 * 1 2 3 30 30 H 1.08995 * 109.47303 * 174.96671 * 1 2 3 31 31 H 1.09005 * 109.47101 * 120.00268 * 2 1 3 32 32 H 1.09003 * 109.46776 * 240.00035 * 2 1 3 33 33 H 1.08996 * 109.47302 * 185.00000 * 5 3 2 34 34 H 1.09000 * 109.47492 * 305.00647 * 5 3 2 35 35 H 1.08002 * 119.99943 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.00385 * 180.27748 * 8 7 6 37 37 H 1.07994 * 120.00211 * 179.97438 * 13 9 8 38 38 H 1.08003 * 119.99863 * 359.97438 * 14 6 5 39 39 H 1.08996 * 109.47129 * 94.60468 * 18 17 15 40 40 H 1.08998 * 109.46980 * 214.59904 * 18 17 15 41 41 H 1.09000 * 109.47339 * 334.60045 * 18 17 15 42 42 H 1.09002 * 109.46935 * 210.00313 * 19 17 15 43 43 H 1.08999 * 109.47082 * 330.00433 * 19 17 15 44 44 H 0.97003 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6011 1.9830 -0.8385 5 6 3.5642 1.4445 -0.1335 6 6 3.9514 0.8848 -1.4782 7 6 4.1772 -0.4713 -1.6233 8 6 4.5271 -0.9855 -2.8578 9 6 4.6625 -0.1420 -3.9447 10 7 5.0432 -0.6917 -5.2652 11 8 5.1620 0.0514 -6.2229 12 8 5.2376 -1.8871 -5.3941 13 6 4.4418 1.2147 -3.7983 14 6 4.0863 1.7281 -2.5651 15 6 1.6480 2.1138 1.2910 16 8 1.6213 1.4762 2.3224 17 7 1.3272 3.4228 1.2995 18 6 1.4654 4.2188 0.0773 19 6 0.8402 4.0497 2.5308 20 6 2.0081 4.5895 3.3155 21 1 3.0126 4.4772 2.9348 22 6 1.7941 5.2276 4.5189 23 7 0.5710 5.3647 4.9821 24 14 3.2417 5.8973 5.4912 25 1 3.9631 6.9056 4.6738 26 1 2.7481 6.5327 6.7394 27 1 4.1648 4.7856 5.8338 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3633 0.4338 0.9316 30 1 -0.3633 -1.0236 -0.0902 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.9354 2.4655 -0.0445 34 1 3.9989 0.8298 0.6547 35 1 4.0758 -1.1297 -0.7731 36 1 4.6992 -2.0455 -2.9723 37 1 4.5480 1.8737 -4.6473 38 1 3.9139 2.7882 -2.4507 39 1 0.5101 4.2486 -0.4467 40 1 1.7693 5.2329 0.3367 41 1 2.2195 3.7670 -0.5672 42 1 0.1629 4.8659 2.2796 43 1 0.3106 3.3094 3.1305 44 1 0.4204 5.8139 5.8285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360926330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:41 Heat of formation + Delta-G solvation = -46.589971 kcal Electronic energy + Delta-G solvation = -26764.963023 eV Core-core repulsion = 22877.452526 eV Total energy + Delta-G solvation = -3887.510497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.22640 -41.34093 -40.30140 -37.66397 -36.84906 -36.36814 -34.66526 -33.53779 -32.37487 -30.92664 -29.73651 -27.75405 -27.17253 -25.42711 -24.78893 -24.14271 -22.85946 -22.11034 -20.36458 -19.74971 -19.63153 -18.67497 -18.58150 -18.24713 -17.11897 -16.82803 -16.54819 -16.28245 -15.89496 -15.65849 -15.06171 -15.04671 -14.80561 -14.52611 -14.24117 -13.96228 -13.90252 -13.53319 -13.43307 -13.14138 -13.04876 -12.88213 -12.76872 -12.73397 -12.56546 -12.33259 -12.29568 -12.26595 -12.19231 -12.12911 -11.89318 -11.72123 -11.67227 -10.64000 -10.53230 -10.30879 -10.27692 -9.39504 -8.21906 -6.36500 -1.23805 0.02734 0.28916 0.41375 1.36880 1.40706 1.47834 1.83265 2.27836 2.33525 2.48327 3.07885 3.37004 3.42610 3.56529 3.67289 3.82598 3.94338 3.98188 4.03807 4.24654 4.34458 4.42893 4.45381 4.55062 4.60609 4.72635 4.74908 4.80639 4.83295 4.88165 4.93288 4.99944 5.05711 5.08922 5.20228 5.23042 5.28097 5.32412 5.35268 5.52899 5.57178 5.85040 6.06586 6.48525 6.71134 6.82634 7.29730 7.52312 8.84831 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.002724 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.973722 B =10276.340006 C =10793.347244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.090 4.090 4 H 0.117 0.883 5 C -0.077 4.077 6 C -0.012 4.012 7 C -0.110 4.110 8 C -0.051 4.051 9 C -0.069 4.069 10 N 0.032 4.968 11 O -0.182 6.182 12 O -0.187 6.187 13 C -0.049 4.049 14 C -0.106 4.106 15 C 0.504 3.496 16 O -0.593 6.593 17 N -0.611 5.611 18 C 0.074 3.926 19 C 0.260 3.740 20 C -0.538 4.538 21 H 0.056 0.944 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.282 1.282 27 H -0.277 1.277 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.021 0.979 43 H -0.006 1.006 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -8.233 -18.814 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.111 4.111 4 H 0.135 0.865 5 C -0.114 4.114 6 C -0.013 4.013 7 C -0.129 4.129 8 C -0.071 4.071 9 C -0.152 4.152 10 N 0.545 4.455 11 O -0.395 6.395 12 O -0.399 6.399 13 C -0.068 4.068 14 C -0.125 4.125 15 C 0.293 3.707 16 O -0.473 6.473 17 N -0.341 5.341 18 C -0.068 4.068 19 C 0.138 3.862 20 C -0.577 4.577 21 H 0.074 0.926 22 C -0.193 4.193 23 N -0.570 5.570 24 Si 0.790 3.210 25 H -0.183 1.183 26 H -0.207 1.207 27 H -0.203 1.203 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.039 0.961 43 H 0.012 0.988 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.340 -8.204 -17.535 20.371 hybrid contribution 0.347 0.284 0.715 0.844 sum 6.688 -7.920 -16.820 19.757 Atomic orbital electron populations 1.21778 0.96067 1.02466 1.00779 1.21537 0.96037 0.93865 1.03160 1.21408 0.96656 0.98268 0.94780 0.86470 1.20630 0.93226 1.03576 0.93997 1.20268 0.92073 0.93796 0.95122 1.21384 0.99025 0.95416 0.97036 1.21201 0.94040 1.01509 0.90301 1.21360 1.15181 0.96027 0.82596 1.44003 0.97200 1.00578 1.03673 1.94518 1.55932 1.57157 1.31912 1.94523 1.54684 0.99227 1.91499 1.21262 0.93481 0.91798 1.00280 1.21429 0.98906 1.02434 0.89682 1.21201 0.76682 0.81655 0.91187 1.90645 1.54759 1.65209 1.36722 1.48209 1.63998 1.09422 1.12516 1.21996 1.02721 0.96602 0.85527 1.18708 0.94029 0.91447 0.81995 1.21671 0.93813 1.36490 1.05737 0.92566 1.25862 0.98664 0.96384 0.98368 1.70045 1.21893 1.43836 1.21241 0.85505 0.78991 0.78570 0.77978 1.18333 1.20686 1.20269 0.91452 0.95970 0.91191 0.92227 0.88356 0.88705 0.89772 0.81825 0.82116 0.81762 0.80709 0.91459 0.91592 0.88116 0.96096 0.98814 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.65 71.98 0.69 -2.83 16 2 C -0.11 -2.26 4.90 30.59 0.15 -2.11 16 3 C -0.09 -1.98 1.35 -11.54 -0.02 -2.00 16 4 H 0.12 1.94 6.51 -2.39 -0.02 1.93 16 5 C -0.08 -1.32 4.64 29.85 0.14 -1.18 16 6 C -0.01 -0.15 4.71 -19.86 -0.09 -0.24 16 7 C -0.11 -1.27 7.88 22.27 0.18 -1.10 16 8 C -0.05 -0.69 9.56 22.27 0.21 -0.47 16 9 C -0.07 -1.13 6.85 36.37 0.25 -0.88 16 10 N 0.03 0.71 4.45 -46.46 -0.21 0.50 16 11 O -0.18 -4.34 18.45 18.89 0.35 -3.99 16 12 O -0.19 -4.55 18.45 18.89 0.35 -4.20 16 13 C -0.05 -0.61 9.56 22.27 0.21 -0.40 16 14 C -0.11 -1.05 9.70 22.27 0.22 -0.83 16 15 C 0.50 18.53 5.79 87.66 0.51 19.04 16 16 O -0.59 -28.53 15.60 -3.04 -0.05 -28.58 16 17 N -0.61 -23.60 2.86 -851.14 -2.43 -26.03 16 18 C 0.07 1.87 9.87 127.77 1.26 3.13 16 19 C 0.26 13.48 5.14 85.63 0.44 13.93 16 20 C -0.54 -29.91 9.39 25.60 0.24 -29.67 16 21 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.01 0.34 5.46 84.66 0.46 0.80 16 23 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 24 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.02 0.67 7.40 -2.39 -0.02 0.65 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.50 7.67 -2.38 -0.02 1.48 16 32 H 0.10 1.42 5.92 -2.39 -0.01 1.40 16 33 H 0.09 1.58 7.56 -2.39 -0.02 1.56 16 34 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.16 1.44 8.00 -2.91 -0.02 1.42 16 36 H 0.16 1.83 7.61 -2.91 -0.02 1.81 16 37 H 0.16 1.63 7.61 -2.91 -0.02 1.61 16 38 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 41 H 0.10 1.65 5.74 -2.39 -0.01 1.63 16 42 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 43 H -0.01 -0.38 7.50 -2.39 -0.02 -0.40 16 44 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.84 372.79 6.18 -70.66 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.01 Total: 5.93 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.85 Total: -4.81 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.35 Total: -80.69 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: 0.65 Total: -36.77 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.84 6.18 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360926330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds