Wall clock time and date at job start Tue Mar 31 2020 12:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47265 * 2 1 4 4 H 1.08997 * 109.47166 * 305.64140 * 3 2 1 5 5 C 1.50697 * 109.46865 * 185.63863 * 3 2 1 6 6 O 1.20828 * 119.99909 * 239.99888 * 5 3 2 7 7 O 1.34224 * 120.00246 * 60.00273 * 5 3 2 8 8 C 1.45203 * 117.00657 * 179.97438 * 7 5 3 9 9 C 1.50703 * 109.46883 * 65.63980 * 3 2 1 10 10 O 1.21276 * 120.00036 * 34.76678 * 9 3 2 11 11 N 1.34779 * 119.99892 * 214.76340 * 9 3 2 12 12 C 1.46504 * 119.99807 * 355.02099 * 11 9 3 13 13 C 1.50694 * 109.46842 * 94.66022 * 12 11 9 14 14 H 1.08000 * 120.00186 * 5.02070 * 13 12 11 15 15 C 1.37880 * 119.99903 * 185.01251 * 13 12 11 16 16 N 1.31512 * 120.00116 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99789 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46980 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.46952 * 209.99687 * 17 15 13 20 20 H 1.48495 * 109.47351 * 329.99634 * 17 15 13 21 21 C 1.46498 * 120.00087 * 175.02265 * 11 9 3 22 22 C 1.50700 * 109.47069 * 89.99870 * 21 11 9 23 23 C 1.38675 * 120.41987 * 269.72131 * 22 21 11 24 24 C 1.38624 * 118.42065 * 179.78357 * 23 22 21 25 25 C 1.38224 * 119.15963 * 0.51532 * 24 23 22 26 26 N 1.31849 * 120.76474 * 359.72459 * 25 24 23 27 27 C 1.31882 * 121.72587 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47056 * 174.95603 * 1 2 3 29 29 H 1.09008 * 109.46708 * 54.96118 * 1 2 3 30 30 H 1.08994 * 109.46874 * 294.95913 * 1 2 3 31 31 H 1.09000 * 109.46551 * 120.00114 * 2 1 3 32 32 H 1.09001 * 109.46974 * 239.99607 * 2 1 3 33 33 H 1.09004 * 109.46844 * 300.00361 * 8 7 5 34 34 H 1.09002 * 109.46699 * 59.99427 * 8 7 5 35 35 H 1.08991 * 109.47334 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46623 * 214.66109 * 12 11 9 37 37 H 1.08997 * 109.47120 * 334.65901 * 12 11 9 38 38 H 0.97005 * 119.99915 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47213 * 209.99978 * 21 11 9 40 40 H 1.09006 * 109.46672 * 330.00011 * 21 11 9 41 41 H 1.08002 * 120.78872 * 0.02562 * 23 22 21 42 42 H 1.08005 * 120.41472 * 180.21787 * 24 23 22 43 43 H 1.08003 * 119.61398 * 179.74761 * 25 24 23 44 44 H 1.08004 * 119.61546 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4446 -0.1396 6 8 4.2269 1.9388 0.7234 7 8 4.1147 0.8978 -1.2226 8 6 5.5646 0.9361 -1.2906 9 6 1.6550 2.1114 1.2944 10 8 1.6314 1.4713 2.3242 11 7 1.3368 3.4210 1.3075 12 6 1.4702 4.2195 0.0864 13 6 0.1455 4.2661 -0.6304 14 1 -0.7290 3.8219 -0.1784 15 6 0.0498 4.8762 -1.8631 16 7 -1.1064 4.9174 -2.4885 17 14 1.5625 5.6442 -2.6451 18 1 2.2582 4.6302 -3.4776 19 1 1.1519 6.7880 -3.4984 20 1 2.4798 6.1248 -1.5809 21 6 0.8577 4.0461 2.5427 22 6 2.0308 4.5817 3.3225 23 6 2.6739 3.7860 4.2586 24 6 3.7513 4.3192 4.9490 25 6 4.1392 5.6205 4.6909 26 7 3.5010 6.3499 3.7970 27 6 2.4760 5.8737 3.1174 28 1 -0.3633 -1.0237 -0.0904 29 1 -0.3633 0.5901 -0.8415 30 1 -0.3633 0.4336 0.9317 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 5.9019 1.9725 -1.2721 34 1 5.9825 0.4029 -0.4367 35 1 5.8977 0.4624 -2.2139 36 1 1.7786 5.2321 0.3464 37 1 2.2192 3.7671 -0.5635 38 1 -1.1736 5.3463 -3.3560 39 1 0.1807 4.8642 2.2971 40 1 0.3297 3.3055 3.1436 41 1 2.3456 2.7737 4.4426 42 1 4.2778 3.7268 5.6827 43 1 4.9751 6.0446 5.2275 44 1 1.9777 6.5013 2.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413264740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:44 Heat of formation + Delta-G solvation = -87.659955 kcal Electronic energy + Delta-G solvation = -28413.987067 eV Core-core repulsion = 24524.695642 eV Total energy + Delta-G solvation = -3889.291425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.77597 -39.97255 -38.96382 -36.29580 -35.55219 -34.34112 -32.96370 -32.18437 -31.37939 -29.01247 -28.23226 -27.36018 -25.84204 -23.37543 -22.76349 -22.35546 -21.95379 -20.92556 -18.43262 -17.64048 -17.33025 -16.87791 -16.72308 -16.54710 -16.06233 -15.81293 -15.54995 -15.11406 -14.43566 -14.04006 -13.91985 -13.64968 -13.45206 -13.29651 -12.96292 -12.81160 -12.63474 -12.52292 -12.39087 -12.17671 -11.98468 -11.82743 -11.64708 -11.28556 -11.12739 -11.01943 -10.78081 -10.72031 -10.55860 -10.37851 -10.15724 -9.76509 -9.60930 -9.34961 -9.25320 -8.82764 -8.75426 -7.93798 -6.31811 -4.35117 1.29700 1.54386 2.33730 2.50345 3.11275 3.20701 3.23942 3.34109 3.66586 4.16054 4.18774 4.65651 4.71095 4.94620 5.00703 5.04644 5.08395 5.11345 5.15096 5.19078 5.26797 5.32111 5.41612 5.51759 5.61067 5.64786 5.84456 5.87898 5.99730 6.02720 6.10675 6.18255 6.25167 6.36825 6.39367 6.43590 6.54288 6.59722 6.62135 6.93414 7.12043 7.32089 7.83989 7.91450 8.17909 8.27238 8.65425 8.75471 9.27223 10.79950 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.006468 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.515107 B = 4327.700431 C = 5527.328364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.110 4.110 4 H 0.147 0.853 5 C 0.477 3.523 6 O -0.498 6.498 7 O -0.354 6.354 8 C 0.035 3.965 9 C 0.548 3.452 10 O -0.550 6.550 11 N -0.578 5.578 12 C 0.209 3.791 13 C -0.547 4.547 14 H 0.084 0.916 15 C 0.083 3.917 16 N -0.883 5.883 17 Si 0.860 3.140 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C 0.163 3.837 22 C -0.146 4.146 23 C -0.049 4.049 24 C -0.180 4.180 25 C 0.090 3.910 26 N -0.491 5.491 27 C 0.111 3.889 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -6.036 5.866 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.131 4.131 4 H 0.165 0.835 5 C 0.319 3.681 6 O -0.384 6.384 7 O -0.271 6.271 8 C -0.059 4.059 9 C 0.334 3.666 10 O -0.429 6.429 11 N -0.307 5.307 12 C 0.088 3.912 13 C -0.585 4.585 14 H 0.102 0.898 15 C -0.122 4.122 16 N -0.520 5.520 17 Si 0.686 3.314 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.040 3.960 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.199 4.199 25 C -0.067 4.067 26 N -0.199 5.199 27 C -0.046 4.046 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.796 -5.267 6.312 12.039 hybrid contribution 0.801 -0.232 -0.593 1.023 sum 9.597 -5.498 5.719 12.452 Atomic orbital electron populations 1.21765 0.93993 1.01813 1.03265 1.21344 0.97622 0.91522 1.03218 1.21467 0.88793 1.01394 1.01486 0.83530 1.23271 0.91251 0.74386 0.79180 1.90699 1.65009 1.41919 1.40807 1.86506 1.24021 1.73192 1.43381 1.23259 0.76689 1.02851 1.03087 1.19416 0.76623 0.81873 0.88681 1.90576 1.54355 1.64351 1.33640 1.47839 1.63476 1.08269 1.11126 1.19844 0.97965 0.91396 0.82004 1.21329 0.94591 1.39047 1.03509 0.89801 1.24822 0.95690 0.95059 0.96630 1.69869 1.23941 1.42960 1.15230 0.87083 0.83825 0.80089 0.80400 1.19652 1.20506 1.18777 1.20187 0.92285 0.98611 0.84937 1.21386 1.00194 0.95492 0.97889 1.21648 0.93356 0.99678 0.92824 1.22094 0.98690 0.97172 1.01986 1.22669 0.98109 0.91249 0.94652 1.67677 1.07663 1.37907 1.06695 1.22757 0.92328 0.93287 0.96204 0.92434 0.91350 0.92248 0.90675 0.90280 0.91944 0.91985 0.88055 0.94631 0.95976 0.92171 0.88481 0.89476 0.84409 0.85280 0.83325 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.65 37.16 0.36 -1.91 16 2 C -0.10 -1.51 5.13 -26.73 -0.14 -1.65 16 3 C -0.11 -1.99 1.81 -92.92 -0.17 -2.16 16 4 H 0.15 2.81 6.19 -51.93 -0.32 2.49 16 5 C 0.48 8.70 6.87 36.00 0.25 8.95 16 6 O -0.50 -10.27 15.78 -18.75 -0.30 -10.56 16 7 O -0.35 -5.52 10.36 -39.24 -0.41 -5.93 16 8 C 0.03 0.41 10.56 101.05 1.07 1.48 16 9 C 0.55 10.91 5.05 -10.98 -0.06 10.85 16 10 O -0.55 -11.42 14.95 5.56 0.08 -11.34 16 11 N -0.58 -11.55 2.44 -176.44 -0.43 -11.98 16 12 C 0.21 4.55 3.81 -5.19 -0.02 4.53 16 13 C -0.55 -13.49 9.55 -34.44 -0.33 -13.82 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.88 -24.38 13.96 55.43 0.77 -23.60 16 17 Si 0.86 19.40 27.37 -169.99 -4.65 14.75 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.26 -5.80 6.69 56.52 0.38 -5.42 16 21 C 0.16 2.86 5.54 -5.19 -0.03 2.83 16 22 C -0.15 -2.48 5.48 -104.48 -0.57 -3.05 16 23 C -0.05 -0.78 9.75 -39.28 -0.38 -1.16 16 24 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 25 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 26 N -0.49 -8.25 10.36 -13.25 -0.14 -8.38 16 27 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.06 0.98 7.42 -51.93 -0.39 0.59 16 31 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 32 H 0.08 1.04 7.98 -51.93 -0.41 0.63 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.78 7.51 -51.93 -0.39 0.39 16 37 H 0.02 0.49 5.25 -51.93 -0.27 0.22 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.10 1.63 8.02 -51.93 -0.42 1.21 16 40 H 0.09 1.47 7.45 -51.93 -0.39 1.09 16 41 H 0.14 2.22 7.51 -52.49 -0.39 1.83 16 42 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 43 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.16 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -30.91 373.17 -6.69 -37.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.34 Total: 7.03 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.90 Total: 6.80 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.21 Total: -43.97 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.62 Total: -27.83 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.65 Total: 14.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.91 -6.69 -37.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413264740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.064 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds