Wall clock time and date at job start Tue Mar 31 2020 12:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47265 * 2 1 4 4 H 1.08997 * 109.47166 * 305.64140 * 3 2 1 5 5 C 1.50697 * 109.46865 * 185.63863 * 3 2 1 6 6 O 1.20828 * 119.99909 * 239.99888 * 5 3 2 7 7 O 1.34224 * 120.00246 * 60.00273 * 5 3 2 8 8 C 1.45203 * 117.00657 * 179.97438 * 7 5 3 9 9 C 1.50703 * 109.46883 * 65.63980 * 3 2 1 10 10 O 1.21276 * 120.00036 * 34.76678 * 9 3 2 11 11 N 1.34779 * 119.99892 * 214.76340 * 9 3 2 12 12 C 1.46504 * 119.99807 * 355.02099 * 11 9 3 13 13 C 1.50694 * 109.46842 * 94.66022 * 12 11 9 14 14 H 1.08000 * 120.00186 * 5.02070 * 13 12 11 15 15 C 1.37880 * 119.99903 * 185.01251 * 13 12 11 16 16 N 1.31512 * 120.00116 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99789 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46980 * 89.99977 * 17 15 13 19 19 H 1.48497 * 109.46952 * 209.99687 * 17 15 13 20 20 H 1.48495 * 109.47351 * 329.99634 * 17 15 13 21 21 C 1.46498 * 120.00087 * 175.02265 * 11 9 3 22 22 C 1.50700 * 109.47069 * 89.99870 * 21 11 9 23 23 C 1.38675 * 120.41987 * 269.72131 * 22 21 11 24 24 C 1.38624 * 118.42065 * 179.78357 * 23 22 21 25 25 C 1.38224 * 119.15963 * 0.51532 * 24 23 22 26 26 N 1.31849 * 120.76474 * 359.72459 * 25 24 23 27 27 C 1.31882 * 121.72587 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47056 * 174.95603 * 1 2 3 29 29 H 1.09008 * 109.46708 * 54.96118 * 1 2 3 30 30 H 1.08994 * 109.46874 * 294.95913 * 1 2 3 31 31 H 1.09000 * 109.46551 * 120.00114 * 2 1 3 32 32 H 1.09001 * 109.46974 * 239.99607 * 2 1 3 33 33 H 1.09004 * 109.46844 * 300.00361 * 8 7 5 34 34 H 1.09002 * 109.46699 * 59.99427 * 8 7 5 35 35 H 1.08991 * 109.47334 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46623 * 214.66109 * 12 11 9 37 37 H 1.08997 * 109.47120 * 334.65901 * 12 11 9 38 38 H 0.97005 * 119.99915 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47213 * 209.99978 * 21 11 9 40 40 H 1.09006 * 109.46672 * 330.00011 * 21 11 9 41 41 H 1.08002 * 120.78872 * 0.02562 * 23 22 21 42 42 H 1.08005 * 120.41472 * 180.21787 * 24 23 22 43 43 H 1.08003 * 119.61398 * 179.74761 * 25 24 23 44 44 H 1.08004 * 119.61546 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4446 -0.1396 6 8 4.2269 1.9388 0.7234 7 8 4.1147 0.8978 -1.2226 8 6 5.5646 0.9361 -1.2906 9 6 1.6550 2.1114 1.2944 10 8 1.6314 1.4713 2.3242 11 7 1.3368 3.4210 1.3075 12 6 1.4702 4.2195 0.0864 13 6 0.1455 4.2661 -0.6304 14 1 -0.7290 3.8219 -0.1784 15 6 0.0498 4.8762 -1.8631 16 7 -1.1064 4.9174 -2.4885 17 14 1.5625 5.6442 -2.6451 18 1 2.2582 4.6302 -3.4776 19 1 1.1519 6.7880 -3.4984 20 1 2.4798 6.1248 -1.5809 21 6 0.8577 4.0461 2.5427 22 6 2.0308 4.5817 3.3225 23 6 2.6739 3.7860 4.2586 24 6 3.7513 4.3192 4.9490 25 6 4.1392 5.6205 4.6909 26 7 3.5010 6.3499 3.7970 27 6 2.4760 5.8737 3.1174 28 1 -0.3633 -1.0237 -0.0904 29 1 -0.3633 0.5901 -0.8415 30 1 -0.3633 0.4336 0.9317 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 5.9019 1.9725 -1.2721 34 1 5.9825 0.4029 -0.4367 35 1 5.8977 0.4624 -2.2139 36 1 1.7786 5.2321 0.3464 37 1 2.2192 3.7671 -0.5635 38 1 -1.1736 5.3463 -3.3560 39 1 0.1807 4.8642 2.2971 40 1 0.3297 3.3055 3.1436 41 1 2.3456 2.7737 4.4426 42 1 4.2778 3.7268 5.6827 43 1 4.9751 6.0446 5.2275 44 1 1.9777 6.5013 2.3934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413264740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:42 Heat of formation + Delta-G solvation = -105.480649 kcal Electronic energy + Delta-G solvation = -28414.759831 eV Core-core repulsion = 24524.695642 eV Total energy + Delta-G solvation = -3890.064188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19675 -41.24027 -40.38328 -37.63602 -37.13396 -35.74482 -34.73433 -33.63568 -32.64236 -30.28444 -30.01211 -28.50324 -27.18801 -24.81564 -24.31571 -23.70801 -23.24022 -22.27692 -19.95031 -19.20364 -18.97479 -18.43968 -18.00299 -17.89888 -17.34224 -17.13117 -17.02089 -16.48656 -16.10181 -15.39726 -15.37611 -14.87932 -14.69333 -14.66574 -14.50293 -14.20585 -14.08224 -13.92655 -13.87047 -13.51784 -13.34378 -13.29795 -12.86554 -12.80770 -12.68672 -12.52600 -12.25336 -12.11247 -11.93432 -11.85654 -11.70163 -11.55446 -11.05293 -10.82817 -10.69571 -10.50306 -10.00746 -9.56319 -8.32610 -6.39520 0.08567 0.31228 0.93114 1.13409 1.32673 1.38117 1.44466 1.88294 2.22756 2.29329 2.90643 3.00040 3.28410 3.50442 3.63629 3.74814 3.84144 3.89046 4.05856 4.07468 4.09065 4.24798 4.26896 4.37172 4.42099 4.47040 4.53839 4.63857 4.64336 4.70535 4.75672 4.79205 4.83998 5.00722 5.12761 5.15677 5.17245 5.32941 5.35742 5.37274 5.53720 5.74730 6.11469 6.45449 6.49917 6.67650 6.97126 7.08983 7.27019 8.82357 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008604 B = 0.006468 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.515107 B = 4327.700431 C = 5527.328364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.114 4.114 4 H 0.134 0.866 5 C 0.481 3.519 6 O -0.527 6.527 7 O -0.352 6.352 8 C 0.025 3.975 9 C 0.543 3.457 10 O -0.562 6.562 11 N -0.584 5.584 12 C 0.221 3.779 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.927 5.927 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.254 1.254 21 C 0.163 3.837 22 C -0.157 4.157 23 C -0.061 4.061 24 C -0.171 4.171 25 C 0.090 3.910 26 N -0.510 5.510 27 C 0.098 3.902 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.270 0.730 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.186 0.814 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.873 -6.652 6.001 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.136 4.136 4 H 0.152 0.848 5 C 0.325 3.675 6 O -0.416 6.416 7 O -0.268 6.268 8 C -0.067 4.067 9 C 0.330 3.670 10 O -0.442 6.442 11 N -0.313 5.313 12 C 0.099 3.901 13 C -0.575 4.575 14 H 0.068 0.932 15 C -0.164 4.164 16 N -0.566 5.566 17 Si 0.738 3.262 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.177 1.177 21 C 0.040 3.960 22 C -0.161 4.161 23 C -0.087 4.087 24 C -0.191 4.191 25 C -0.067 4.067 26 N -0.218 5.218 27 C -0.058 4.058 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.151 0.849 42 H 0.181 0.819 43 H 0.203 0.797 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.270 -5.896 6.447 14.260 hybrid contribution 0.051 -0.102 -0.563 0.574 sum 11.321 -5.997 5.884 14.099 Atomic orbital electron populations 1.21717 0.94009 1.03172 1.01401 1.21387 0.97473 0.89825 1.04393 1.21508 0.89440 1.02801 0.99843 0.84793 1.23176 0.91026 0.73953 0.79395 1.90680 1.65555 1.43372 1.41966 1.86490 1.26298 1.72250 1.41797 1.23664 0.74334 1.03259 1.05466 1.19754 0.76216 0.81737 0.89303 1.90554 1.54901 1.64456 1.34260 1.47885 1.63653 1.08494 1.11253 1.19577 0.96144 0.91810 0.82531 1.21365 0.94782 1.37909 1.03446 0.93201 1.25497 0.98147 0.95589 0.97171 1.69989 1.26106 1.44562 1.15903 0.86204 0.80722 0.79469 0.79826 1.18497 1.20405 1.17735 1.20242 0.92922 0.98539 0.84315 1.21266 1.00312 0.95862 0.98615 1.21749 0.94271 0.99508 0.93210 1.22453 0.97611 0.97343 1.01670 1.23311 0.98344 0.91275 0.93733 1.67707 1.07887 1.38709 1.07545 1.22784 0.92916 0.93345 0.96790 0.89493 0.92785 0.94419 0.90741 0.87680 0.92387 0.91409 0.84097 0.94321 0.95739 0.92052 0.88479 0.89400 0.84922 0.81906 0.79691 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.65 71.98 0.69 -3.63 16 2 C -0.09 -2.75 5.13 30.59 0.16 -2.59 16 3 C -0.11 -4.12 1.81 -12.29 -0.02 -4.14 16 4 H 0.13 5.17 6.19 -2.39 -0.01 5.16 16 5 C 0.48 17.05 6.87 71.23 0.49 17.53 16 6 O -0.53 -21.29 15.78 21.96 0.35 -20.94 16 7 O -0.35 -10.24 10.36 -51.36 -0.53 -10.77 16 8 C 0.03 0.53 10.56 113.37 1.20 1.73 16 9 C 0.54 21.84 5.05 87.66 0.44 22.28 16 10 O -0.56 -23.52 14.95 -3.02 -0.05 -23.56 16 11 N -0.58 -23.76 2.44 -830.51 -2.03 -25.79 16 12 C 0.22 9.69 3.81 85.63 0.33 10.02 16 13 C -0.54 -27.15 9.55 25.60 0.24 -26.90 16 14 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 15 C 0.04 1.92 5.47 84.66 0.46 2.38 16 16 N -0.93 -52.25 13.96 21.45 0.30 -51.95 16 17 Si 0.91 39.58 27.37 68.60 1.88 41.46 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.25 -10.50 6.69 99.48 0.67 -9.84 16 21 C 0.16 5.86 5.54 85.63 0.47 6.34 16 22 C -0.16 -5.34 5.48 -19.77 -0.11 -5.45 16 23 C -0.06 -1.91 9.75 22.47 0.22 -1.69 16 24 C -0.17 -4.40 10.11 22.36 0.23 -4.18 16 25 C 0.09 2.37 11.18 84.69 0.95 3.31 16 26 N -0.51 -16.43 10.36 -195.85 -2.03 -18.46 16 27 C 0.10 3.31 10.86 84.67 0.92 4.23 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.04 1.26 7.42 -2.39 -0.02 1.24 16 31 H 0.07 2.23 7.66 -2.39 -0.02 2.21 16 32 H 0.10 2.54 7.98 -2.39 -0.02 2.52 16 33 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 34 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 35 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.69 7.51 -2.39 -0.02 1.67 16 37 H 0.02 1.08 5.25 -2.39 -0.01 1.06 16 38 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 39 H 0.10 3.40 8.02 -2.39 -0.02 3.38 16 40 H 0.09 3.09 7.45 -2.38 -0.02 3.07 16 41 H 0.13 4.25 7.51 -2.91 -0.02 4.23 16 42 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -67.12 373.17 5.52 -61.60 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.96 Total: 29.17 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.67 Total: 19.25 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.76 Total: -96.21 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.23 Total: -55.27 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.88 Total: 41.46 kcal Total: -67.12 5.52 -61.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413264740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.880 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds