Wall clock time and date at job start Tue Mar 31 2020 12:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46945 * 2 1 4 4 H 1.08999 * 109.46798 * 55.00192 * 3 2 1 5 5 C 1.52998 * 109.46895 * 175.00083 * 3 2 1 6 6 O 1.42895 * 109.47293 * 295.00352 * 3 2 1 7 7 C 1.35948 * 117.00153 * 155.07057 * 6 3 2 8 8 C 1.38751 * 119.98415 * 5.59225 * 7 6 3 9 9 C 1.38051 * 120.02390 * 180.02562 * 8 7 6 10 10 C 1.38916 * 119.98084 * 359.97438 * 9 8 7 11 11 N 1.39863 * 120.02269 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99808 * 33.31990 * 11 10 9 13 13 O 1.21392 * 120.00135 * 5.03310 * 12 11 10 14 14 C 1.49333 * 119.99896 * 185.04173 * 12 11 10 15 15 O 1.21363 * 120.00270 * 359.97438 * 14 12 11 16 16 N 1.34786 * 119.99883 * 179.97438 * 14 12 11 17 17 C 1.46502 * 119.99895 * 179.97438 * 16 14 12 18 18 C 1.50702 * 109.46771 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99566 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00617 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99826 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47342 * 59.99887 * 22 20 18 24 24 H 1.48497 * 109.47196 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47141 * 299.99881 * 22 20 18 26 26 C 1.38919 * 119.95777 * 0.28434 * 10 9 8 27 27 C 1.38058 * 119.98211 * 359.41971 * 26 10 9 28 28 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47062 * 300.00052 * 1 2 3 30 30 H 1.08999 * 109.47262 * 59.99657 * 1 2 3 31 31 H 1.08999 * 109.46915 * 240.00449 * 2 1 3 32 32 H 1.08992 * 109.47191 * 119.99984 * 2 1 3 33 33 H 1.09001 * 109.47055 * 180.02562 * 5 3 2 34 34 H 1.09006 * 109.47394 * 299.99901 * 5 3 2 35 35 H 1.08999 * 109.47308 * 60.00422 * 5 3 2 36 36 H 1.08002 * 119.98216 * 0.02562 * 8 7 6 37 37 H 1.07999 * 120.01180 * 179.97438 * 9 8 7 38 38 H 0.96998 * 120.00331 * 213.31458 * 11 10 9 39 39 H 0.96999 * 119.99802 * 0.02562 * 16 14 12 40 40 H 1.08999 * 109.46930 * 299.99966 * 17 16 14 41 41 H 1.09000 * 109.46686 * 60.00216 * 17 16 14 42 42 H 0.96991 * 120.00724 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.00807 * 179.72065 * 26 10 9 44 44 H 1.07995 * 119.99252 * 180.28019 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0815 -1.2210 7 6 1.5534 3.4364 -1.2007 8 6 1.9175 4.1443 -0.0642 9 6 1.8072 5.5202 -0.0425 10 6 1.3320 6.1962 -1.1592 11 7 1.2203 7.5902 -1.1384 12 6 2.1056 8.3267 -0.4382 13 8 3.0522 7.7890 0.0990 14 6 1.9219 9.8042 -0.3229 15 8 0.9758 10.3419 -0.8601 16 7 2.8070 10.5407 0.3779 17 6 2.6271 11.9903 0.4905 18 6 3.7431 12.5720 1.3195 19 1 4.5098 11.9265 1.7218 20 6 3.7851 13.9281 1.5643 21 7 2.8517 14.7142 1.0740 22 14 5.1688 14.6493 2.5913 23 1 6.4714 14.3620 1.9385 24 1 4.9864 16.1186 2.7056 25 1 5.1490 14.0408 3.9457 26 6 0.9626 5.4863 -2.2948 27 6 1.0794 4.1108 -2.3168 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9281 2.4720 0.1262 34 1 3.8532 0.9570 1.0571 35 1 3.9994 0.9054 -0.7161 36 1 2.2873 3.6186 0.8037 37 1 2.0902 6.0710 0.8423 38 1 0.5059 8.0270 -1.6280 39 1 3.5634 10.1110 0.8069 40 1 2.6419 12.4365 -0.5038 41 1 1.6710 12.2015 0.9694 42 1 2.8811 15.6682 1.2465 43 1 0.5888 6.0107 -3.1618 44 1 0.7965 3.5592 -3.2011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427857767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:29 Heat of formation + Delta-G solvation = -112.831129 kcal Electronic energy + Delta-G solvation = -25665.973633 eV Core-core repulsion = 21775.590704 eV Total energy + Delta-G solvation = -3890.382929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14079 -41.16523 -39.92314 -38.60084 -36.60072 -35.77707 -34.74927 -34.33713 -32.17911 -30.82659 -30.21078 -29.49737 -26.40695 -24.93872 -24.53606 -24.11564 -22.86180 -21.64380 -21.38139 -20.12855 -19.35166 -18.56963 -18.29220 -17.42007 -17.17484 -16.92740 -16.61133 -16.25460 -15.95239 -15.78465 -15.40456 -15.18246 -14.97276 -14.78749 -14.35282 -14.32012 -14.07543 -14.01537 -13.90647 -13.61436 -13.50153 -13.03175 -12.87139 -12.75573 -12.70810 -12.68875 -12.24214 -12.14179 -11.98526 -11.75541 -11.56299 -11.48521 -11.02310 -10.84248 -10.69272 -10.06975 -10.03973 -8.78658 -8.31721 -6.48109 -0.06255 0.30306 0.59768 1.27839 1.44521 1.47025 1.55721 2.07001 2.23982 2.35898 2.71103 2.74364 3.03439 3.42260 3.70865 3.82361 3.85907 3.98409 4.09161 4.17633 4.35409 4.42384 4.44313 4.57812 4.68349 4.70011 4.85444 4.96449 4.97274 5.01631 5.09905 5.16462 5.19319 5.20184 5.23320 5.25954 5.30671 5.31637 5.43044 5.50266 5.71216 5.76990 5.98011 6.43736 6.49223 6.57257 6.74242 6.98207 7.24833 8.79595 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025961 B = 0.002060 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.265644 B =13588.337095 C =14346.112333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.181 4.181 6 O -0.314 6.314 7 C 0.117 3.883 8 C -0.192 4.192 9 C -0.094 4.094 10 C 0.085 3.915 11 N -0.630 5.630 12 C 0.518 3.482 13 O -0.520 6.520 14 C 0.494 3.506 15 O -0.557 6.557 16 N -0.673 5.673 17 C 0.263 3.737 18 C -0.564 4.564 19 H 0.080 0.920 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.264 1.264 26 C -0.091 4.091 27 C -0.135 4.135 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.430 0.570 39 H 0.413 0.587 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.271 0.729 43 H 0.160 0.840 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -30.213 -3.483 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.094 0.906 5 C -0.238 4.238 6 O -0.229 6.229 7 C 0.071 3.929 8 C -0.211 4.211 9 C -0.114 4.114 10 C -0.008 4.008 11 N -0.277 5.277 12 C 0.300 3.700 13 O -0.395 6.395 14 C 0.274 3.726 15 O -0.437 6.437 16 N -0.323 5.323 17 C 0.141 3.859 18 C -0.601 4.601 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.562 5.562 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.189 1.189 26 C -0.111 4.111 27 C -0.154 4.154 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.270 0.730 39 H 0.249 0.751 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.080 0.920 43 H 0.178 0.822 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.162 -30.093 -3.614 30.474 hybrid contribution 0.511 1.106 0.607 1.361 sum -2.650 -28.988 -3.007 29.263 Atomic orbital electron populations 1.21765 0.95314 1.02371 1.01740 1.21658 0.96623 0.92827 1.04126 1.22753 0.95571 0.94684 0.85321 0.90618 1.22391 0.94664 1.02750 1.03977 1.86106 1.83824 1.16050 1.36893 1.19149 0.96019 0.83140 0.94590 1.21256 1.06555 0.93794 0.99470 1.20982 0.98842 0.94217 0.97405 1.17857 1.05714 0.81466 0.95801 1.43004 1.30625 1.04931 1.49163 1.20070 0.82607 0.87511 0.79797 1.90741 1.30086 1.72963 1.45757 1.20197 0.83677 0.87899 0.80835 1.90717 1.31612 1.73583 1.47828 1.46159 1.26916 1.09761 1.49421 1.18842 0.96794 0.74217 0.96038 1.21535 1.10663 0.93877 1.34044 0.90237 1.25963 0.99063 0.97110 0.96879 1.70086 1.35265 1.05544 1.45338 0.85237 0.78390 0.76944 0.78858 1.18921 1.20740 1.18873 1.20981 1.00305 0.93550 0.96252 1.20482 1.03469 0.93054 0.98414 0.91371 0.92810 0.93305 0.90790 0.88147 0.92951 0.89119 0.91462 0.83729 0.85984 0.73042 0.75060 0.97627 0.97644 0.92026 0.82200 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 71.98 0.71 -0.90 16 2 C -0.12 -1.10 5.64 30.60 0.17 -0.93 16 3 C 0.07 0.95 2.22 30.59 0.07 1.02 16 4 H 0.08 0.97 6.32 -2.39 -0.02 0.96 16 5 C -0.18 -2.18 9.17 71.98 0.66 -1.52 16 6 O -0.31 -5.65 9.34 -92.96 -0.87 -6.52 16 7 C 0.12 2.33 6.60 22.52 0.15 2.48 16 8 C -0.19 -4.07 8.23 22.35 0.18 -3.89 16 9 C -0.09 -2.42 8.65 22.39 0.19 -2.23 16 10 C 0.08 2.08 6.28 38.19 0.24 2.32 16 11 N -0.63 -16.93 5.33 -304.75 -1.62 -18.56 16 12 C 0.52 17.46 7.63 87.23 0.67 18.13 16 13 O -0.52 -18.74 14.15 -3.38 -0.05 -18.79 16 14 C 0.49 20.01 7.89 87.23 0.69 20.70 16 15 O -0.56 -25.02 16.48 -3.29 -0.05 -25.07 16 16 N -0.67 -29.55 5.54 -468.24 -2.59 -32.14 16 17 C 0.26 14.06 5.43 85.63 0.46 14.53 16 18 C -0.56 -30.55 9.28 25.60 0.24 -30.32 16 19 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 20 C 0.01 0.57 5.46 84.65 0.46 1.03 16 21 N -0.92 -54.19 13.29 21.45 0.28 -53.91 16 22 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 C -0.09 -1.72 9.96 22.39 0.22 -1.50 16 27 C -0.14 -2.44 9.98 22.35 0.22 -2.21 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.64 7.82 -2.39 -0.02 0.62 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.79 6.89 -2.39 -0.02 0.77 16 34 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.15 2.57 5.41 -2.91 -0.02 2.55 16 37 H 0.12 3.51 6.40 -2.91 -0.02 3.49 16 38 H 0.43 10.06 8.29 -92.71 -0.77 9.29 16 39 H 0.41 16.60 7.79 -92.71 -0.72 15.88 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.27 14.85 8.31 -92.72 -0.77 14.08 16 43 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -67.29 373.28 2.01 -65.28 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.45 Total: 28.84 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 5.34 Total: 16.72 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.93 Total: -104.61 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.97 Total: -50.39 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.29 2.01 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427857767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.549 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds