Wall clock time and date at job start Tue Mar 31 2020 12:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.09007 * 109.47261 * 304.99572 * 3 2 1 5 5 C 1.53003 * 109.47246 * 185.00139 * 3 2 1 6 6 O 1.42901 * 109.46858 * 305.00296 * 5 3 2 7 7 C 1.42907 * 114.00126 * 179.97438 * 6 5 3 8 8 N 1.46493 * 109.47477 * 65.00169 * 3 2 1 9 9 C 1.34781 * 119.99841 * 274.99999 * 8 3 2 10 10 O 1.21354 * 120.00341 * 359.97438 * 9 8 3 11 11 C 1.49356 * 119.99968 * 179.97438 * 9 8 3 12 12 O 1.21374 * 119.99767 * 0.02562 * 11 9 8 13 13 N 1.34780 * 120.00019 * 180.27598 * 11 9 8 14 14 C 1.39742 * 119.99698 * 174.61798 * 13 11 9 15 15 C 1.39343 * 119.95052 * 145.76194 * 14 13 11 16 16 C 1.38472 * 120.42504 * 179.97438 * 15 14 13 17 17 C 1.37692 * 120.32504 * 359.97438 * 16 15 14 18 18 C 1.40746 * 119.89990 * 359.97438 * 17 16 15 19 19 C 1.41412 * 120.21248 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00160 * 205.17915 * 19 18 17 21 21 C 1.39935 * 119.99532 * 25.18606 * 19 18 17 22 22 N 1.30831 * 119.99970 * 16.78935 * 21 19 18 23 23 Si 1.86802 * 120.00176 * 196.78838 * 21 19 18 24 24 H 1.48501 * 109.46993 * 94.96367 * 23 21 19 25 25 H 1.48496 * 109.47128 * 214.96506 * 23 21 19 26 26 H 1.48507 * 109.46787 * 334.96489 * 23 21 19 27 27 C 1.38301 * 119.95535 * 325.48362 * 14 13 11 28 28 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46989 * 300.00396 * 1 2 3 30 30 H 1.08998 * 109.47049 * 60.00136 * 1 2 3 31 31 H 1.09002 * 109.47143 * 240.00128 * 2 1 3 32 32 H 1.08998 * 109.47049 * 119.99864 * 2 1 3 33 33 H 1.09004 * 109.46932 * 64.99604 * 5 3 2 34 34 H 1.08993 * 109.47319 * 185.00041 * 5 3 2 35 35 H 1.08997 * 109.46932 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.46789 * 299.99887 * 7 6 5 37 37 H 1.09000 * 109.46788 * 59.99655 * 7 6 5 38 38 H 0.97003 * 120.00178 * 94.99690 * 8 3 2 39 39 H 0.96999 * 119.99751 * 354.61245 * 13 11 9 40 40 H 1.08001 * 119.78747 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.83647 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.05357 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00302 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.16417 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4445 -0.1258 6 8 4.1293 0.6405 0.9120 7 6 5.5566 0.5744 0.8849 8 7 1.6525 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6327 0.4335 11 6 0.0398 3.3317 2.6433 12 8 0.8150 3.3639 3.5766 13 7 -1.1796 3.8938 2.7603 14 6 -1.5922 4.4183 3.9881 15 6 -2.4084 5.5471 4.0234 16 6 -2.8235 6.0748 5.2344 17 6 -2.4341 5.4888 6.4181 18 6 -1.6107 4.3475 6.3984 19 6 -1.2065 3.7407 7.6100 20 1 -0.2974 3.1589 7.6456 21 6 -1.9847 3.8940 8.7629 22 7 -3.2238 4.3027 8.6662 23 14 -1.2544 3.5151 10.4400 24 1 -0.7385 4.7672 11.0495 25 1 -2.3025 2.9333 11.3163 26 1 -0.1415 2.5438 10.2872 27 6 -1.1946 3.8129 5.1663 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0378 -1.0961 34 1 3.9354 2.4655 -0.0366 35 1 5.9068 -0.0538 1.7039 36 1 5.8826 0.1494 -0.0645 37 1 5.9689 1.5774 0.9947 38 1 2.2720 2.1232 1.9977 39 1 -1.7707 3.9342 1.9923 40 1 -2.7193 6.0135 3.1002 41 1 -3.4563 6.9498 5.2507 42 1 -2.7601 5.9043 7.3602 43 1 -3.7631 4.4093 9.4653 44 1 -0.5654 2.9356 5.1402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453659567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:17 Heat of formation + Delta-G solvation = -97.448827 kcal Electronic energy + Delta-G solvation = -26581.920144 eV Core-core repulsion = 22692.204242 eV Total energy + Delta-G solvation = -3889.715902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.72133 -39.17829 -38.15661 -37.11143 -35.79977 -34.53686 -33.06181 -32.33984 -29.85863 -29.63710 -28.46332 -26.63524 -25.36322 -24.73412 -23.59936 -21.56741 -20.92909 -20.62899 -19.77656 -18.39282 -17.50417 -17.18312 -16.48998 -16.02876 -15.90852 -15.65846 -15.33343 -15.16015 -14.80446 -14.61799 -14.28754 -13.93705 -13.33148 -13.19524 -13.01093 -12.88176 -12.84819 -12.47955 -12.19282 -11.80591 -11.71893 -11.58026 -11.35522 -11.24755 -11.20675 -11.14549 -10.93472 -10.84871 -10.46717 -10.09356 -10.05730 -9.67595 -9.42831 -9.22937 -9.09685 -8.98087 -7.48385 -6.98358 -6.73328 -4.35626 1.57271 2.51333 2.77098 2.95239 3.09649 3.14654 3.20643 3.36813 3.60627 3.91323 3.96883 4.39095 4.63005 4.64495 4.74959 4.88862 5.00675 5.01669 5.05365 5.18670 5.32534 5.39241 5.50653 5.68305 5.76601 5.90216 6.07236 6.22076 6.24045 6.36945 6.37365 6.62534 6.73334 6.86878 6.99451 7.02940 7.15943 7.24880 7.47527 7.66493 7.85630 7.91945 8.06264 8.10766 8.18696 8.47671 8.65605 8.91144 8.95271 10.20429 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.002957 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.954280 B = 9465.639418 C =10603.376814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.147 3.853 4 H 0.104 0.896 5 C 0.051 3.949 6 O -0.385 6.385 7 C 0.031 3.969 8 N -0.694 5.694 9 C 0.512 3.488 10 O -0.521 6.521 11 C 0.495 3.505 12 O -0.498 6.498 13 N -0.634 5.634 14 C 0.145 3.855 15 C -0.255 4.255 16 C -0.092 4.092 17 C -0.169 4.169 18 C 0.120 3.880 19 C -0.458 4.458 20 H 0.079 0.921 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.909 3.091 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.261 1.261 27 C -0.208 4.208 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.418 0.582 39 H 0.410 0.590 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.280 0.720 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 -5.702 -15.462 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.043 3.957 4 H 0.122 0.878 5 C -0.026 4.026 6 O -0.304 6.304 7 C -0.065 4.065 8 N -0.348 5.348 9 C 0.294 3.706 10 O -0.397 6.397 11 C 0.275 3.725 12 O -0.372 6.372 13 N -0.279 5.279 14 C 0.054 3.946 15 C -0.277 4.277 16 C -0.111 4.111 17 C -0.188 4.188 18 C 0.117 3.883 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.230 4.230 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.255 0.745 39 H 0.246 0.754 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.815 -5.798 -15.205 19.539 hybrid contribution 0.422 -0.021 0.492 0.648 sum 11.237 -5.819 -14.713 19.406 Atomic orbital electron populations 1.21842 0.94818 1.00923 1.02979 1.21872 0.96823 0.95157 1.02996 1.21248 0.92221 0.94599 0.87627 0.87813 1.22873 0.92834 0.95336 0.91555 1.87925 1.20343 1.70464 1.51663 1.22766 0.80738 1.01169 1.01826 1.45755 1.16249 1.55550 1.17289 1.20255 0.82583 0.79343 0.88461 1.90738 1.50724 1.58320 1.39909 1.19999 0.83192 0.81094 0.88167 1.90818 1.50509 1.56342 1.39581 1.43133 1.15513 1.56227 1.13027 1.17442 0.99408 0.94651 0.83133 1.20069 1.10494 1.00019 0.97073 1.20475 0.99414 0.98599 0.92591 1.21387 1.03397 0.97202 0.96834 1.17477 0.89308 0.89984 0.91572 1.19603 1.07812 1.28444 0.92880 0.90253 1.25910 0.94004 0.92928 1.01357 1.69824 1.06348 1.34406 1.31394 0.86278 0.79796 0.79586 0.80957 1.19329 1.20311 1.18514 1.20972 1.09106 1.02149 0.90726 0.93317 0.92506 0.92172 0.91175 0.90654 0.91508 0.92268 0.89382 0.94077 0.93897 0.74536 0.75400 0.89003 0.88828 0.86187 0.90895 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.52 37.16 0.32 -1.41 16 2 C -0.13 -1.28 5.33 -26.73 -0.14 -1.43 16 3 C 0.15 1.44 2.66 -67.93 -0.18 1.26 16 4 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 5 C 0.05 0.39 5.68 37.16 0.21 0.61 16 6 O -0.39 -3.54 9.65 -35.23 -0.34 -3.88 16 7 C 0.03 0.20 11.01 101.05 1.11 1.32 16 8 N -0.69 -8.62 5.00 -54.27 -0.27 -8.90 16 9 C 0.51 7.74 6.45 -11.63 -0.08 7.67 16 10 O -0.52 -8.14 13.62 5.49 0.07 -8.07 16 11 C 0.49 9.15 7.61 -11.63 -0.09 9.06 16 12 O -0.50 -10.62 14.23 5.48 0.08 -10.54 16 13 N -0.63 -12.05 5.32 -10.34 -0.05 -12.11 16 14 C 0.15 3.32 6.25 -83.82 -0.52 2.80 16 15 C -0.26 -5.67 9.97 -39.08 -0.39 -6.06 16 16 C -0.09 -2.14 10.01 -39.69 -0.40 -2.53 16 17 C -0.17 -4.40 8.69 -38.83 -0.34 -4.74 16 18 C 0.12 3.27 5.57 -106.85 -0.59 2.67 16 19 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 20 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 21 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 22 N -0.79 -20.58 10.94 55.55 0.61 -19.97 16 23 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.21 -5.37 8.39 -38.67 -0.32 -5.69 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.80 5.65 -51.93 -0.29 0.51 16 30 H 0.06 0.70 7.85 -51.93 -0.41 0.30 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.42 5.28 7.85 -40.82 -0.32 4.95 16 39 H 0.41 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 43 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 44 H 0.11 2.78 6.48 -52.49 -0.34 2.44 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.20 366.92 -7.42 -37.63 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.17 Total: 13.82 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.85 Total: -7.45 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.28 Total: -40.98 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.19 Total: -22.48 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.20 -7.42 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453659567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.823 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds