Wall clock time and date at job start Tue Mar 31 2020 12:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.09007 * 109.47261 * 304.99572 * 3 2 1 5 5 C 1.53003 * 109.47246 * 185.00139 * 3 2 1 6 6 O 1.42901 * 109.46858 * 305.00296 * 5 3 2 7 7 C 1.42907 * 114.00126 * 179.97438 * 6 5 3 8 8 N 1.46493 * 109.47477 * 65.00169 * 3 2 1 9 9 C 1.34781 * 119.99841 * 274.99999 * 8 3 2 10 10 O 1.21354 * 120.00341 * 359.97438 * 9 8 3 11 11 C 1.49356 * 119.99968 * 179.97438 * 9 8 3 12 12 O 1.21374 * 119.99767 * 0.02562 * 11 9 8 13 13 N 1.34780 * 120.00019 * 180.27598 * 11 9 8 14 14 C 1.39742 * 119.99698 * 174.61798 * 13 11 9 15 15 C 1.39343 * 119.95052 * 145.76194 * 14 13 11 16 16 C 1.38472 * 120.42504 * 179.97438 * 15 14 13 17 17 C 1.37692 * 120.32504 * 359.97438 * 16 15 14 18 18 C 1.40746 * 119.89990 * 359.97438 * 17 16 15 19 19 C 1.41412 * 120.21248 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00160 * 205.17915 * 19 18 17 21 21 C 1.39935 * 119.99532 * 25.18606 * 19 18 17 22 22 N 1.30831 * 119.99970 * 16.78935 * 21 19 18 23 23 Si 1.86802 * 120.00176 * 196.78838 * 21 19 18 24 24 H 1.48501 * 109.46993 * 94.96367 * 23 21 19 25 25 H 1.48496 * 109.47128 * 214.96506 * 23 21 19 26 26 H 1.48507 * 109.46787 * 334.96489 * 23 21 19 27 27 C 1.38301 * 119.95535 * 325.48362 * 14 13 11 28 28 H 1.08993 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46989 * 300.00396 * 1 2 3 30 30 H 1.08998 * 109.47049 * 60.00136 * 1 2 3 31 31 H 1.09002 * 109.47143 * 240.00128 * 2 1 3 32 32 H 1.08998 * 109.47049 * 119.99864 * 2 1 3 33 33 H 1.09004 * 109.46932 * 64.99604 * 5 3 2 34 34 H 1.08993 * 109.47319 * 185.00041 * 5 3 2 35 35 H 1.08997 * 109.46932 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.46789 * 299.99887 * 7 6 5 37 37 H 1.09000 * 109.46788 * 59.99655 * 7 6 5 38 38 H 0.97003 * 120.00178 * 94.99690 * 8 3 2 39 39 H 0.96999 * 119.99751 * 354.61245 * 13 11 9 40 40 H 1.08001 * 119.78747 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.83647 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.05357 * 179.97438 * 17 16 15 43 43 H 0.96998 * 120.00302 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.16417 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4445 -0.1258 6 8 4.1293 0.6405 0.9120 7 6 5.5566 0.5744 0.8849 8 7 1.6525 2.0975 1.2517 9 6 0.4351 2.6644 1.3669 10 8 -0.3398 2.6327 0.4335 11 6 0.0398 3.3317 2.6433 12 8 0.8150 3.3639 3.5766 13 7 -1.1796 3.8938 2.7603 14 6 -1.5922 4.4183 3.9881 15 6 -2.4084 5.5471 4.0234 16 6 -2.8235 6.0748 5.2344 17 6 -2.4341 5.4888 6.4181 18 6 -1.6107 4.3475 6.3984 19 6 -1.2065 3.7407 7.6100 20 1 -0.2974 3.1589 7.6456 21 6 -1.9847 3.8940 8.7629 22 7 -3.2238 4.3027 8.6662 23 14 -1.2544 3.5151 10.4400 24 1 -0.7385 4.7672 11.0495 25 1 -2.3025 2.9333 11.3163 26 1 -0.1415 2.5438 10.2872 27 6 -1.1946 3.8129 5.1663 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8498 1.0378 -1.0961 34 1 3.9354 2.4655 -0.0366 35 1 5.9068 -0.0538 1.7039 36 1 5.8826 0.1494 -0.0645 37 1 5.9689 1.5774 0.9947 38 1 2.2720 2.1232 1.9977 39 1 -1.7707 3.9342 1.9923 40 1 -2.7193 6.0135 3.1002 41 1 -3.4563 6.9498 5.2507 42 1 -2.7601 5.9043 7.3602 43 1 -3.7631 4.4093 9.4653 44 1 -0.5654 2.9356 5.1402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453659567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:16 Heat of formation + Delta-G solvation = -118.031742 kcal Electronic energy + Delta-G solvation = -26582.812686 eV Core-core repulsion = 22692.204242 eV Total energy + Delta-G solvation = -3890.608444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06281 -40.50058 -39.11180 -38.77877 -36.83374 -36.19464 -34.86371 -33.36196 -31.79269 -30.49116 -30.16655 -27.33729 -27.21871 -26.04172 -24.43821 -23.15981 -22.70964 -21.64193 -21.27285 -19.93020 -19.16127 -18.18928 -17.54798 -17.38482 -17.10541 -16.83196 -16.63326 -16.47135 -16.25820 -15.87757 -15.63002 -15.29234 -14.90426 -14.70170 -14.24992 -13.97202 -13.91158 -13.64356 -13.56756 -13.19114 -13.07246 -12.99866 -12.86714 -12.68336 -12.48871 -12.26628 -12.19078 -11.97068 -11.90564 -11.74963 -11.53495 -11.18397 -10.93392 -10.65591 -10.56032 -10.23442 -9.43436 -8.84550 -8.63643 -6.38620 0.15399 0.94114 1.04274 1.32149 1.37582 1.51201 1.51394 2.13403 2.21227 2.59772 2.71835 2.84695 3.37725 3.67773 3.70498 3.93048 4.19148 4.40009 4.42182 4.43276 4.53168 4.58586 4.59851 4.60921 4.68918 4.90088 4.91045 4.94135 5.00382 5.05506 5.07531 5.11651 5.16476 5.27987 5.31313 5.45544 5.60266 5.77080 5.98642 6.04032 6.08311 6.20216 6.27480 6.39227 6.63343 6.75894 6.88852 6.95636 7.01585 8.32264 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.002957 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.954280 B = 9465.639418 C =10603.376814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.143 3.857 4 H 0.111 0.889 5 C 0.054 3.946 6 O -0.410 6.410 7 C 0.027 3.973 8 N -0.682 5.682 9 C 0.523 3.477 10 O -0.524 6.524 11 C 0.492 3.508 12 O -0.530 6.530 13 N -0.629 5.629 14 C 0.151 3.849 15 C -0.247 4.247 16 C -0.089 4.089 17 C -0.193 4.193 18 C 0.091 3.909 19 C -0.500 4.500 20 H 0.066 0.934 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.983 3.017 24 H -0.259 1.259 25 H -0.263 1.263 26 H -0.264 1.264 27 C -0.233 4.233 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.417 0.583 39 H 0.425 0.575 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.290 0.710 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.758 -5.699 -17.170 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.040 3.960 4 H 0.129 0.871 5 C -0.022 4.022 6 O -0.330 6.330 7 C -0.069 4.069 8 N -0.335 5.335 9 C 0.303 3.697 10 O -0.401 6.401 11 C 0.274 3.726 12 O -0.406 6.406 13 N -0.276 5.276 14 C 0.058 3.942 15 C -0.268 4.268 16 C -0.108 4.108 17 C -0.213 4.213 18 C 0.088 3.912 19 C -0.529 4.529 20 H 0.084 0.916 21 C -0.177 4.177 22 N -0.447 5.447 23 Si 0.803 3.197 24 H -0.184 1.184 25 H -0.188 1.188 26 H -0.188 1.188 27 C -0.255 4.255 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.253 0.747 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.463 -5.805 -16.969 21.285 hybrid contribution 0.234 -0.036 0.867 0.899 sum 11.697 -5.842 -16.102 20.742 Atomic orbital electron populations 1.21814 0.96192 1.00976 1.01434 1.21842 0.95431 0.95278 1.03727 1.21538 0.94069 0.94264 0.86144 0.87123 1.22907 0.90926 0.95852 0.92550 1.87889 1.21833 1.70805 1.52459 1.22897 0.79440 1.01678 1.02884 1.45834 1.14921 1.54391 1.18349 1.19540 0.83546 0.79784 0.86844 1.90741 1.51041 1.58940 1.39421 1.20706 0.82539 0.80184 0.89160 1.90805 1.51403 1.57228 1.41170 1.43047 1.16159 1.56154 1.12204 1.17516 0.98480 0.94462 0.83733 1.20488 1.08920 0.99070 0.98290 1.20842 0.98858 0.99128 0.91947 1.21369 1.04682 0.97688 0.97584 1.17807 0.90262 0.90851 0.92265 1.19772 1.08372 1.30261 0.94544 0.91554 1.26710 0.94062 0.92294 1.04647 1.69852 1.07242 1.34626 1.32945 0.85193 0.79018 0.79560 0.75928 1.18376 1.18757 1.18771 1.20934 1.10224 1.02496 0.91810 0.92566 0.95396 0.92200 0.88446 0.91831 0.88654 0.91725 0.89274 0.92364 0.93470 0.74655 0.73669 0.85112 0.85595 0.87480 0.89924 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.52 71.98 0.61 -2.63 16 2 C -0.12 -2.22 5.33 30.59 0.16 -2.06 16 3 C 0.14 2.51 2.66 44.99 0.12 2.63 16 4 H 0.11 1.86 7.58 -2.38 -0.02 1.84 16 5 C 0.05 0.70 5.68 71.98 0.41 1.11 16 6 O -0.41 -6.82 9.65 -148.98 -1.44 -8.26 16 7 C 0.03 0.30 11.01 113.37 1.25 1.55 16 8 N -0.68 -16.43 5.00 -443.96 -2.22 -18.65 16 9 C 0.52 15.53 6.45 87.24 0.56 16.09 16 10 O -0.52 -15.79 13.62 -3.26 -0.04 -15.84 16 11 C 0.49 18.34 7.61 87.24 0.66 19.01 16 12 O -0.53 -23.33 14.23 -3.32 -0.05 -23.38 16 13 N -0.63 -23.69 5.32 -304.98 -1.62 -25.31 16 14 C 0.15 6.92 6.25 38.16 0.24 7.16 16 15 C -0.25 -10.54 9.97 22.59 0.23 -10.32 16 16 C -0.09 -4.06 10.01 22.20 0.22 -3.84 16 17 C -0.19 -10.35 8.69 22.75 0.20 -10.15 16 18 C 0.09 5.20 5.57 -21.31 -0.12 5.08 16 19 C -0.50 -28.66 9.05 23.46 0.21 -28.44 16 20 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 21 C 0.04 1.98 5.16 85.25 0.44 2.42 16 22 N -0.82 -43.50 10.94 21.82 0.24 -43.26 16 23 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C -0.23 -12.53 8.39 22.86 0.19 -12.34 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.03 0.77 5.65 -2.39 -0.01 0.75 16 30 H 0.06 1.31 7.85 -2.39 -0.02 1.29 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.31 7.73 -2.39 -0.02 1.29 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.42 10.44 7.85 -92.71 -0.73 9.71 16 39 H 0.42 13.36 8.30 -92.71 -0.77 12.59 16 40 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 43 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 44 H 0.09 4.93 6.48 -2.91 -0.02 4.91 16 Total: -1.00 -68.06 366.92 1.83 -66.24 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.46 Total: 41.57 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.39 Total: -14.74 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.61 Total: -87.22 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.53 Total: -47.48 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -68.06 1.83 -66.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453659567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.794 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds