Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 H 1.09003 * 109.47027 * 305.31196 * 3 2 1 5 5 C 1.53000 * 109.47197 * 185.31293 * 3 2 1 6 6 N 1.46499 * 109.46849 * 180.02562 * 5 3 2 7 7 C 1.34778 * 119.99818 * 179.97438 * 6 5 3 8 8 O 1.21358 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.49355 * 120.00068 * 179.97438 * 7 6 5 10 10 O 1.21372 * 119.99932 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00068 * 179.97438 * 9 7 6 12 12 C 1.39735 * 119.99959 * 174.76199 * 11 9 7 13 13 C 1.39349 * 119.95229 * 147.55379 * 12 11 9 14 14 C 1.38468 * 120.42546 * 179.97438 * 13 12 11 15 15 C 1.37695 * 120.32893 * 359.97438 * 14 13 12 16 16 C 1.40756 * 119.89398 * 0.02562 * 15 14 13 17 17 C 1.41410 * 120.20414 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00139 * 206.98132 * 17 16 15 19 19 C 1.39929 * 119.99987 * 26.98625 * 17 16 15 20 20 N 1.30831 * 120.00506 * 12.65381 * 19 17 16 21 21 Si 1.86805 * 119.99971 * 192.65536 * 19 17 16 22 22 H 1.48497 * 109.47323 * 59.99754 * 21 19 17 23 23 H 1.48498 * 109.47158 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47069 * 299.99893 * 21 19 17 25 25 C 1.38302 * 119.95632 * 327.28308 * 12 11 9 26 26 O 1.42898 * 109.46908 * 65.31102 * 3 2 1 27 27 C 1.42903 * 113.99919 * 242.91801 * 26 3 2 28 28 H 1.09001 * 109.47348 * 175.16559 * 1 2 3 29 29 H 1.08999 * 109.47166 * 295.16618 * 1 2 3 30 30 H 1.09001 * 109.47363 * 55.16725 * 1 2 3 31 31 H 1.09003 * 109.47047 * 240.00151 * 2 1 3 32 32 H 1.08994 * 109.46956 * 120.00524 * 2 1 3 33 33 H 1.08999 * 109.46592 * 299.99778 * 5 3 2 34 34 H 1.08998 * 109.46937 * 59.99859 * 5 3 2 35 35 H 0.96999 * 120.00019 * 359.97438 * 6 5 3 36 36 H 0.97003 * 119.99751 * 354.77147 * 11 9 7 37 37 H 1.07999 * 119.78516 * 359.96206 * 13 12 11 38 38 H 1.07999 * 119.83854 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.05425 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00617 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.16274 * 359.97438 * 25 12 11 42 42 H 1.09005 * 109.46943 * 175.01576 * 27 26 3 43 43 H 1.08994 * 109.47245 * 295.01533 * 27 26 3 44 44 H 1.08996 * 109.46969 * 55.02066 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 -0.8386 5 6 3.5642 1.4445 -0.1336 6 7 4.0525 2.8257 -0.1329 7 6 5.3729 3.0737 -0.2404 8 8 6.1573 2.1528 -0.3381 9 6 5.8708 4.4818 -0.2403 10 8 5.0863 5.4028 -0.1431 11 7 7.1912 4.7297 -0.3473 12 6 7.6484 6.0456 -0.4575 13 6 8.8812 6.4016 0.0858 14 6 9.3440 7.7025 -0.0182 15 6 8.5904 8.6593 -0.6606 16 6 7.3431 8.3147 -1.2144 17 6 6.5640 9.2919 -1.8760 18 1 5.4895 9.1908 -1.9141 19 6 7.1854 10.3898 -2.4814 20 7 8.4821 10.3939 -2.6552 21 14 6.1634 11.8498 -3.0415 22 1 5.4565 12.4360 -1.8746 23 1 7.0526 12.8731 -3.6475 24 1 5.1685 11.4005 -4.0483 25 6 6.8792 6.9915 -1.1104 26 8 1.6682 2.0791 1.2241 27 6 0.7861 3.1908 1.0565 28 1 -0.3634 -1.0240 -0.0866 29 1 -0.3633 0.4370 0.9301 30 1 -0.3634 0.5870 -0.8435 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.0030 0.9040 0.7051 34 1 3.8477 0.9589 -1.0673 35 1 3.4255 3.5618 -0.0552 36 1 7.8242 3.9947 -0.3479 37 1 9.4796 5.6581 0.5913 38 1 10.3007 7.9681 0.4067 39 1 8.9558 9.6725 -0.7395 40 1 8.9129 11.1552 -3.0745 41 1 5.9256 6.7157 -1.5360 42 1 0.4814 3.5635 2.0345 43 1 1.2987 3.9822 0.5098 44 1 -0.0946 2.8747 0.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453770695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = -101.431525 kcal Electronic energy + Delta-G solvation = -26151.954897 eV Core-core repulsion = 22262.066292 eV Total energy + Delta-G solvation = -3889.888605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.62327 -39.24695 -38.39919 -37.12232 -35.20450 -34.42863 -33.63589 -33.00024 -29.86856 -29.56399 -28.44927 -26.77162 -25.38104 -24.94036 -23.11872 -21.69631 -21.23113 -20.80192 -19.73961 -18.47217 -17.55460 -17.33493 -16.61923 -15.84866 -15.76440 -15.63782 -15.39190 -15.01979 -14.68086 -14.59023 -14.21402 -14.14632 -13.77558 -13.61736 -13.17602 -12.96285 -12.83294 -12.56358 -12.20934 -12.02224 -11.74541 -11.71423 -11.50884 -11.46494 -11.26850 -11.13098 -11.11413 -10.92266 -10.50546 -10.14885 -9.95175 -9.68579 -9.47461 -9.35945 -9.12730 -9.00139 -7.48242 -6.98629 -6.70600 -4.38076 1.52705 2.47867 2.76563 2.92195 3.07609 3.11012 3.19761 3.35127 3.57037 3.83967 3.95207 4.29795 4.52328 4.59377 4.64115 4.72169 4.87226 4.99244 5.10462 5.15425 5.23331 5.32330 5.44318 5.54378 5.55414 5.66443 5.68244 5.86377 6.09284 6.20337 6.34939 6.59196 6.80843 6.81398 6.97635 7.01843 7.09079 7.23438 7.43410 7.64552 7.79137 7.90155 8.04436 8.08515 8.16643 8.44880 8.64138 8.90244 8.93767 10.22082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002661 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.310850 B =10517.909537 C =11821.929829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.073 0.927 5 C 0.109 3.891 6 N -0.699 5.699 7 C 0.512 3.488 8 O -0.524 6.524 9 C 0.496 3.504 10 O -0.500 6.500 11 N -0.632 5.632 12 C 0.143 3.857 13 C -0.253 4.253 14 C -0.093 4.093 15 C -0.165 4.165 16 C 0.118 3.882 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.208 4.208 26 O -0.378 6.378 27 C 0.026 3.974 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.280 0.720 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 -15.239 3.386 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.016 3.984 4 H 0.091 0.909 5 C -0.014 4.014 6 N -0.353 5.353 7 C 0.293 3.707 8 O -0.400 6.400 9 C 0.277 3.723 10 O -0.374 6.374 11 N -0.277 5.277 12 C 0.051 3.949 13 C -0.274 4.274 14 C -0.112 4.112 15 C -0.184 4.184 16 C 0.115 3.885 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.425 5.425 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.229 4.229 26 O -0.297 6.297 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.993 -15.192 3.435 19.657 hybrid contribution -0.431 0.709 -0.532 0.986 sum -12.423 -14.482 2.903 19.300 Atomic orbital electron populations 1.21738 0.95108 1.01941 1.02080 1.21785 0.96814 0.95034 1.03352 1.22497 0.93155 0.94810 0.87895 0.90868 1.21832 0.93308 0.82937 1.03356 1.45609 1.07315 1.09545 1.72849 1.20302 0.83100 0.89881 0.77422 1.90738 1.55270 1.45951 1.48041 1.19936 0.83958 0.88879 0.79516 1.90804 1.55051 1.45104 1.46436 1.43130 1.06489 1.08949 1.69138 1.17463 0.95418 0.81927 1.00047 1.20084 0.97962 0.97196 1.12147 1.20494 0.98236 0.92875 0.99600 1.21452 0.96875 0.99254 1.00862 1.17492 0.91829 0.90426 0.88718 1.19533 0.94969 1.04221 1.30028 0.90419 1.25899 0.95112 0.99146 0.94167 1.69790 1.10216 1.29995 1.32532 0.86314 0.80253 0.80209 0.79602 1.18842 1.20364 1.19057 1.21021 1.01862 0.92966 1.07076 1.87967 1.66246 1.46085 1.29363 1.22945 0.92765 0.88368 1.02975 0.92353 0.92150 0.92893 0.90458 0.90534 0.90075 0.89803 0.75166 0.75341 0.88937 0.88767 0.85921 0.90875 0.87423 0.89321 0.93619 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.76 37.16 0.36 -0.51 16 2 C -0.13 -0.84 5.64 -26.73 -0.15 -0.99 16 3 C 0.07 0.59 2.32 -26.73 -0.06 0.53 16 4 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 5 C 0.11 1.07 5.37 -4.04 -0.02 1.05 16 6 N -0.70 -8.76 5.44 -60.76 -0.33 -9.09 16 7 C 0.51 8.01 7.89 -11.63 -0.09 7.92 16 8 O -0.52 -8.82 16.48 5.49 0.09 -8.73 16 9 C 0.50 9.22 7.62 -11.63 -0.09 9.13 16 10 O -0.50 -10.50 14.11 5.48 0.08 -10.42 16 11 N -0.63 -12.08 5.32 -10.34 -0.06 -12.14 16 12 C 0.14 3.27 6.28 -83.82 -0.53 2.74 16 13 C -0.25 -5.59 9.96 -39.08 -0.39 -5.98 16 14 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 15 C -0.16 -4.28 8.67 -38.83 -0.34 -4.62 16 16 C 0.12 3.22 5.56 -106.85 -0.59 2.62 16 17 C -0.46 -12.35 9.06 -37.74 -0.34 -12.70 16 18 H 0.08 2.05 7.88 -52.49 -0.41 1.63 16 19 C 0.07 1.86 5.23 -17.35 -0.09 1.77 16 20 N -0.80 -20.64 10.82 55.55 0.60 -20.04 16 21 Si 0.91 18.87 29.58 -169.99 -5.03 13.84 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.21 -5.32 8.39 -38.67 -0.32 -5.65 16 26 O -0.38 -3.58 9.72 -35.23 -0.34 -3.92 16 27 C 0.03 0.20 10.68 101.05 1.08 1.28 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.39 7.96 -51.93 -0.41 -0.03 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.41 4.96 7.19 -40.82 -0.29 4.67 16 36 H 0.41 6.80 8.29 -40.82 -0.34 6.46 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.27 6.15 -52.49 -0.32 2.94 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.11 2.79 6.35 -52.49 -0.33 2.45 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.36 7.54 -51.93 -0.39 -0.04 16 44 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -30.56 373.77 -7.59 -38.15 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.26 Total: 12.69 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.97 Total: -5.97 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.22 Total: -41.27 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.17 Total: -23.07 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.56 -7.59 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453770695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.281 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds