Wall clock time and date at job start Tue Mar 31 2020 12:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34639 * 116.99944 * 2 1 4 4 O 1.21508 * 120.00088 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00025 * 179.97438 * 3 2 1 6 6 C 1.39454 * 120.00270 * 185.40084 * 5 3 2 7 7 C 1.39129 * 119.92331 * 34.47451 * 6 5 3 8 8 C 1.37665 * 120.07278 * 180.25452 * 7 6 5 9 9 C 1.39756 * 119.92561 * 359.50077 * 8 7 6 10 10 C 1.47586 * 120.07302 * 180.27257 * 9 8 7 11 11 O 1.21586 * 120.00060 * 317.33520 * 10 9 8 12 12 N 1.34778 * 119.99697 * 137.33820 * 10 9 8 13 13 C 1.46496 * 119.99936 * 212.71496 * 12 10 9 14 14 C 1.50701 * 109.47549 * 89.99489 * 13 12 10 15 15 H 1.08004 * 119.99470 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00333 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99827 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47196 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46979 * 119.99932 * 18 16 14 21 21 H 1.48496 * 109.47108 * 240.00094 * 18 16 14 22 22 C 1.46498 * 120.00287 * 32.71010 * 12 10 9 23 23 C 1.53003 * 109.47377 * 301.35551 * 22 12 10 24 24 C 1.53002 * 109.46747 * 61.35282 * 22 12 10 25 25 C 1.39753 * 119.85148 * 0.25338 * 9 8 7 26 26 C 1.37671 * 119.92224 * 359.97438 * 25 9 8 27 27 H 1.09003 * 109.46952 * 59.99664 * 1 2 3 28 28 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47358 * 299.99777 * 1 2 3 30 30 H 0.96996 * 120.00149 * 5.40248 * 5 3 2 31 31 H 1.08001 * 119.96572 * 0.02562 * 7 6 5 32 32 H 1.08004 * 120.03370 * 179.77726 * 8 7 6 33 33 H 1.09004 * 109.47348 * 210.00293 * 13 12 10 34 34 H 1.09001 * 109.47108 * 329.99816 * 13 12 10 35 35 H 0.96994 * 120.00408 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47078 * 181.34992 * 22 12 10 37 37 H 1.09006 * 109.46811 * 13.40751 * 23 22 12 38 38 H 1.08995 * 109.47190 * 133.40934 * 23 22 12 39 39 H 1.08998 * 109.46763 * 253.41070 * 23 22 12 40 40 H 1.09000 * 109.47310 * 103.97604 * 24 22 12 41 41 H 1.09004 * 109.46971 * 223.97579 * 24 22 12 42 42 H 1.09004 * 109.47359 * 343.97280 * 24 22 12 43 43 H 1.07994 * 120.03792 * 180.02562 * 25 9 8 44 44 H 1.08001 * 119.96038 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0425 2.5074 0.1142 7 6 3.4752 3.5082 0.8966 8 6 4.0951 4.7324 1.0068 9 6 5.3010 4.9658 0.3400 10 6 5.9714 6.2751 0.4607 11 8 5.3191 7.2996 0.4054 12 7 7.3069 6.3349 0.6322 13 6 7.8956 7.4151 1.4277 14 6 7.9830 6.9867 2.8699 15 1 7.6352 6.0075 3.1643 16 6 8.5079 7.8443 3.8132 17 7 8.9318 9.0365 3.4546 18 14 8.6169 7.3130 5.6007 19 1 8.0781 5.9364 5.7417 20 1 10.0358 7.3358 6.0383 21 1 7.8240 8.2440 6.4431 22 6 8.1699 5.3198 0.0231 23 6 7.7678 3.9350 0.5345 24 6 8.0162 5.3661 -1.4984 25 6 5.8707 3.9566 -0.4410 26 6 5.2430 2.7362 -0.5506 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9372 0.4605 -0.0782 31 1 2.5456 3.3258 1.4152 32 1 3.6523 5.5101 1.6115 33 1 8.8948 7.6388 1.0538 34 1 7.2711 8.3051 1.3504 35 1 9.3014 9.6397 4.1181 36 1 9.2081 5.5182 0.2896 37 1 6.8010 3.9988 1.0341 38 1 7.6978 3.2438 -0.3054 39 1 8.5179 3.5760 1.2391 40 1 8.8857 5.8558 -1.9368 41 1 7.9369 4.3506 -1.8866 42 1 7.1162 5.9247 -1.7559 43 1 6.8026 4.1335 -0.9572 44 1 5.6829 1.9557 -1.1537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490948146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:56 Heat of formation + Delta-G solvation = -23.873989 kcal Electronic energy + Delta-G solvation = -27446.717353 eV Core-core repulsion = 23560.191896 eV Total energy + Delta-G solvation = -3886.525458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46909 -41.72269 -39.61412 -38.16199 -37.49001 -36.18307 -35.17860 -33.45969 -31.66849 -31.18194 -29.18790 -28.37590 -27.89835 -25.60935 -24.53644 -23.98387 -22.97852 -22.33920 -20.13265 -19.91028 -18.95134 -18.65273 -17.92513 -17.74340 -17.36160 -17.25170 -16.39147 -16.37134 -16.16427 -15.60457 -15.30041 -15.11565 -14.78285 -14.72203 -14.54122 -14.17908 -14.05162 -13.60915 -13.60249 -13.31303 -13.17544 -13.01425 -13.00135 -12.75159 -12.49264 -12.34123 -12.14185 -12.08446 -11.91519 -11.83469 -11.64977 -11.25983 -11.16644 -10.83557 -10.66321 -9.68138 -9.37599 -9.00110 -8.22689 -6.39534 -0.15384 0.43783 0.98705 1.36009 1.37956 1.45229 1.50728 1.74521 2.27102 2.41362 2.77333 3.05842 3.10686 3.64265 3.78649 3.88480 3.93895 4.15597 4.24909 4.30017 4.33979 4.35478 4.41360 4.50463 4.67284 4.70521 4.71639 4.90732 4.93140 5.00568 5.04662 5.08014 5.13044 5.19120 5.21874 5.23177 5.34600 5.42435 5.53297 5.60291 5.87250 5.92045 6.05938 6.19221 6.69229 6.77007 7.11005 7.18310 7.35545 8.83672 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.003300 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.493775 B = 8483.842796 C = 9188.277264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.363 6.363 3 C 0.644 3.356 4 O -0.586 6.586 5 N -0.631 5.631 6 C 0.188 3.812 7 C -0.154 4.154 8 C -0.059 4.059 9 C -0.181 4.181 10 C 0.566 3.434 11 O -0.591 6.591 12 N -0.614 5.614 13 C 0.263 3.737 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.283 1.283 22 C 0.123 3.877 23 C -0.198 4.198 24 C -0.175 4.175 25 C -0.053 4.053 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.060 0.940 30 H 0.438 0.562 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.023 0.977 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.199 0.801 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -25.264 -10.693 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.398 3.602 4 O -0.476 6.476 5 N -0.284 5.284 6 C 0.094 3.906 7 C -0.174 4.174 8 C -0.079 4.079 9 C -0.185 4.185 10 C 0.357 3.643 11 O -0.472 6.472 12 N -0.346 5.346 13 C 0.142 3.858 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.209 1.209 22 C 0.020 3.980 23 C -0.254 4.254 24 C -0.232 4.232 25 C -0.071 4.071 26 C -0.179 4.179 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.279 0.721 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.041 0.959 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.062 0.938 43 H 0.215 0.785 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.948 -24.193 -10.645 27.601 hybrid contribution -0.100 0.748 1.458 1.642 sum -8.048 -23.445 -9.187 26.436 Atomic orbital electron populations 1.23589 0.72289 1.06007 1.02735 1.86261 1.26050 1.28957 1.86323 1.18325 0.83527 0.82636 0.75720 1.91063 1.65240 1.36096 1.55161 1.41690 1.03131 1.09402 1.74195 1.17632 0.93483 0.84572 0.94959 1.20817 1.01618 0.93378 1.01575 1.20886 0.92788 0.96785 0.97467 1.19993 0.97858 0.94905 1.05755 1.18693 0.82465 0.88878 0.74304 1.90664 1.66838 1.38751 1.50939 1.47996 1.05065 1.29476 1.52020 1.18807 0.92378 0.85147 0.89468 1.21795 1.41360 1.01525 0.93595 0.92354 1.25880 0.94663 0.94670 1.03871 1.70071 1.42189 1.08444 1.36055 0.85357 0.78241 0.78480 0.78692 1.18871 1.19372 1.20884 1.21435 0.95096 0.88159 0.93337 1.23720 1.02771 0.95448 1.03418 1.22703 1.02760 1.04340 0.93446 1.22964 0.98848 0.91188 0.94084 1.21061 0.95696 0.98761 1.02378 0.91859 0.84050 0.92121 0.72146 0.85621 0.87583 0.95868 0.98797 0.92370 0.89224 0.90507 0.86177 0.92152 0.90449 0.86355 0.93780 0.78524 0.79681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -5.78 10.62 -55.48 -0.59 -6.36 16 3 C 0.64 13.76 8.47 129.79 1.10 14.86 16 4 O -0.59 -17.32 13.88 19.82 0.28 -17.04 16 5 N -0.63 -10.49 5.32 -429.47 -2.29 -12.78 16 6 C 0.19 4.19 6.25 38.36 0.24 4.43 16 7 C -0.15 -4.63 8.62 22.35 0.19 -4.43 16 8 C -0.06 -2.15 9.65 22.50 0.22 -1.93 16 9 C -0.18 -6.48 4.27 -20.08 -0.09 -6.57 16 10 C 0.57 26.10 5.84 86.71 0.51 26.60 16 11 O -0.59 -33.07 16.80 -3.99 -0.07 -33.14 16 12 N -0.61 -27.23 2.38 -805.82 -1.92 -29.14 16 13 C 0.26 14.58 5.32 85.63 0.46 15.04 16 14 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 16 C 0.01 0.48 5.46 84.65 0.46 0.94 16 17 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.12 3.79 3.27 44.99 0.15 3.94 16 23 C -0.20 -4.78 7.72 71.98 0.56 -4.22 16 24 C -0.18 -3.97 8.37 71.98 0.60 -3.37 16 25 C -0.05 -1.28 4.87 22.50 0.11 -1.17 16 26 C -0.16 -2.79 9.69 22.35 0.22 -2.58 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.44 3.61 8.92 -92.71 -0.83 2.78 16 31 H 0.13 3.95 6.48 -2.91 -0.02 3.93 16 32 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.02 1.30 7.93 -2.38 -0.02 1.28 16 34 H -0.01 -0.40 7.37 -2.39 -0.02 -0.41 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.09 2.87 7.80 -2.39 -0.02 2.85 16 37 H 0.08 2.28 4.00 -11.19 -0.04 2.24 16 38 H 0.12 1.65 5.24 -2.39 -0.01 1.64 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 1.49 6.17 -2.39 -0.01 1.48 16 42 H 0.04 1.23 6.82 -2.39 -0.02 1.21 16 43 H 0.20 3.86 1.06 -4.18 0.00 3.85 16 44 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -85.31 355.62 4.07 -81.23 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.19 Total: 14.52 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.16 Total: 12.10 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -3.92 Total: -98.14 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.38 Total: -56.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -85.31 4.07 -81.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490948146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.359 kcal (2) G-P(sol) polarization free energy of solvation -85.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds