Wall clock time and date at job start Tue Mar 31 2020 12:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.50703 * 109.47302 * 184.99961 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00223 * 5 3 2 7 7 C 1.37878 * 119.99838 * 60.00134 * 5 3 2 8 8 N 1.31516 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99954 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47426 * 59.99910 * 9 7 5 11 11 H 1.48506 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46975 * 299.99805 * 9 7 5 13 13 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 14 14 C 1.34777 * 119.99873 * 275.00296 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14 19 19 C 1.34777 * 119.99871 * 179.97438 * 18 17 16 20 20 O 1.21771 * 120.00183 * 0.02562 * 19 18 17 21 21 C 1.41555 * 119.99993 * 179.97438 * 19 18 17 22 22 C 1.35624 * 119.99816 * 180.02562 * 21 19 18 23 23 C 1.41605 * 119.99840 * 180.02562 * 22 21 19 24 24 C 1.37953 * 126.10518 * 180.02562 * 23 22 21 25 25 C 1.40314 * 106.52920 * 179.97438 * 24 23 22 26 26 C 1.35150 * 107.20421 * 359.97438 * 25 24 23 27 27 O 1.34013 * 109.03687 * 359.77105 * 26 25 24 28 28 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 29 29 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 30 30 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 32 32 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 33 33 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00050 * 94.72411 * 13 3 2 35 35 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 36 36 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 37 37 H 1.09000 * 109.46497 * 299.99731 * 17 16 14 38 38 H 1.08987 * 109.47025 * 59.99846 * 17 16 14 39 39 H 0.96999 * 120.00085 * 359.97438 * 18 17 16 40 40 H 1.07999 * 119.99969 * 0.02562 * 21 19 18 41 41 H 1.07999 * 120.00215 * 0.02562 * 22 21 19 42 42 H 1.08001 * 126.73304 * 359.97438 * 24 23 22 43 43 H 1.08003 * 126.39383 * 179.97438 * 25 24 23 44 44 H 1.08004 * 125.47920 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8802 -1.3812 10 1 6.5967 0.1454 -0.2344 11 1 6.3979 0.2158 -2.6499 12 1 6.5003 2.2801 -1.3808 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0362 3.3376 2.6549 17 6 -1.3826 3.8945 2.5211 18 7 -1.7701 4.5495 3.7729 19 6 -2.9870 5.1173 3.8877 20 8 -3.7646 5.0855 2.9511 21 6 -3.3616 5.7498 5.0974 22 6 -4.5864 6.3207 5.2131 23 6 -4.9610 6.9539 6.4230 24 6 -6.1682 7.5710 6.6777 25 6 -6.0996 8.0546 7.9931 26 6 -4.8831 7.7215 8.4786 27 8 -4.2033 7.0556 7.5350 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0618 -2.9495 34 1 2.2704 2.1197 1.9991 35 1 0.0672 2.6129 3.4685 36 1 0.7276 4.1529 2.8679 37 1 -1.4131 4.6193 1.7076 38 1 -2.0741 3.0795 2.3079 39 1 -1.1509 4.5745 4.5191 40 1 -2.6722 5.7777 5.9282 41 1 -5.2760 6.2925 4.3824 42 1 -7.0024 7.6637 5.9980 43 1 -6.8744 8.5926 8.5193 44 1 -4.5191 7.9511 9.4692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492606936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:59 Heat of formation + Delta-G solvation = -51.843450 kcal Electronic energy + Delta-G solvation = -25199.611336 eV Core-core repulsion = 21311.873032 eV Total energy + Delta-G solvation = -3887.738305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.98460 -39.99902 -39.03081 -35.60771 -34.84653 -34.39842 -33.48742 -32.41402 -31.42251 -30.49560 -29.14460 -27.02123 -25.12666 -23.37758 -22.60805 -22.28617 -21.05665 -20.36302 -19.70473 -19.28642 -18.01955 -17.34847 -16.94166 -16.52823 -16.23169 -15.84979 -15.42442 -15.24968 -14.92109 -14.73978 -14.19140 -14.05200 -13.52611 -13.46008 -13.24988 -12.96892 -12.83293 -12.66368 -12.47021 -12.06811 -11.76014 -11.57714 -11.24964 -11.21346 -11.00390 -10.99336 -10.81976 -10.35883 -10.33572 -10.19403 -10.12192 -9.62985 -9.14104 -9.07641 -9.00059 -8.50109 -8.37660 -7.83103 -6.12625 -4.22408 0.07210 1.70694 2.29760 2.49742 3.09824 3.24592 3.27161 3.30367 3.31071 3.37579 4.14083 4.30493 4.40800 4.46647 4.51716 4.75585 4.83486 5.02886 5.17618 5.20166 5.20727 5.31284 5.39365 5.56912 5.64506 5.69669 5.82915 5.99270 6.01127 6.11416 6.37200 6.40099 6.46431 6.59987 6.66890 7.03925 7.20456 7.36959 7.39013 7.45174 7.61258 7.72665 7.89909 8.11916 8.18157 8.65272 8.76705 9.12352 9.44970 10.92562 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.001739 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.822399 B =16101.910323 C =16599.974096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.504 3.496 15 O -0.546 6.546 16 C -0.156 4.156 17 C 0.135 3.865 18 N -0.726 5.726 19 C 0.545 3.455 20 O -0.543 6.543 21 C -0.202 4.202 22 C 0.006 3.994 23 C -0.009 4.009 24 C -0.164 4.164 25 C -0.219 4.219 26 C -0.021 4.021 27 O -0.166 6.166 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.130 0.870 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 12.723 22.293 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.287 3.713 15 O -0.424 6.424 16 C -0.197 4.197 17 C 0.012 3.988 18 N -0.377 5.377 19 C 0.335 3.665 20 O -0.423 6.423 21 C -0.223 4.223 22 C -0.014 4.014 23 C -0.058 4.058 24 C -0.183 4.183 25 C -0.238 4.238 26 C -0.090 4.090 27 O -0.061 6.061 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.148 0.852 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.347 12.417 20.723 28.098 hybrid contribution 1.569 0.065 0.854 1.787 sum -12.779 12.482 21.577 28.012 Atomic orbital electron populations 1.21841 0.98304 0.98050 1.01263 1.21936 0.92629 0.99826 1.02254 1.18791 0.94161 0.89196 0.81060 0.93261 1.21192 0.90728 1.39180 1.06303 0.92176 1.24889 0.98579 0.94815 0.95395 1.69887 1.35213 1.37429 1.09336 0.86517 0.84886 0.78280 0.77446 1.20205 1.21129 1.20215 1.46487 1.14623 1.55973 1.18481 1.20045 0.82945 0.79592 0.88678 1.90712 1.51324 1.59830 1.40576 1.21852 0.97482 1.01749 0.98611 1.21070 0.94465 0.97908 0.85387 1.45971 1.16617 1.57830 1.17258 1.16958 0.81974 0.79303 0.88278 1.90874 1.51084 1.59398 1.40913 1.22109 0.98498 1.02925 0.98724 1.20689 0.96719 0.91485 0.92469 1.19915 0.91611 1.06362 0.87889 1.22407 0.97748 1.00797 0.97380 1.21812 0.98899 1.06798 0.96260 1.24341 0.92497 0.97869 0.94295 1.84104 1.42141 1.59203 1.20690 0.94318 0.93096 0.95870 0.88303 0.95091 0.92491 0.77989 0.88959 0.88870 0.90363 0.90393 0.76632 0.85180 0.82110 0.82520 0.82886 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -13.94 5.02 -54.93 -0.28 -14.22 16 14 C 0.50 9.34 6.40 -10.99 -0.07 9.27 16 15 O -0.55 -12.37 13.12 5.55 0.07 -12.30 16 16 C -0.16 -1.95 5.81 -27.88 -0.16 -2.12 16 17 C 0.14 1.86 4.96 -4.04 -0.02 1.84 16 18 N -0.73 -7.82 5.55 -63.25 -0.35 -8.17 16 19 C 0.55 6.80 7.56 -15.00 -0.11 6.68 16 20 O -0.54 -9.03 16.11 5.13 0.08 -8.95 16 21 C -0.20 -1.90 9.41 -39.25 -0.37 -2.27 16 22 C 0.01 0.06 9.39 -39.23 -0.37 -0.31 16 23 C -0.01 -0.07 6.84 -38.40 -0.26 -0.34 16 24 C -0.16 -1.17 10.90 -38.91 -0.42 -1.59 16 25 C -0.22 -1.28 10.87 -39.90 -0.43 -1.71 16 26 C -0.02 -0.12 12.06 29.63 0.36 0.24 16 27 O -0.17 -1.35 10.18 4.70 0.05 -1.30 16 28 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.50 8.54 -40.82 -0.35 6.15 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.08 1.24 8.10 -51.94 -0.42 0.82 16 39 H 0.40 2.89 8.43 -40.82 -0.34 2.55 16 40 H 0.13 0.95 7.72 -52.49 -0.41 0.54 16 41 H 0.16 1.44 7.46 -52.49 -0.39 1.04 16 42 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.21 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -33.88 374.71 -7.65 -41.53 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.23 Total: 8.60 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.25 Total: -2.30 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.00 Total: -46.32 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.20 Total: -22.55 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.88 -7.65 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492606936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.309 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds