Wall clock time and date at job start Tue Mar 31 2020 12:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.50703 * 109.47302 * 184.99961 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00223 * 5 3 2 7 7 C 1.37878 * 119.99838 * 60.00134 * 5 3 2 8 8 N 1.31516 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99954 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47426 * 59.99910 * 9 7 5 11 11 H 1.48506 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46975 * 299.99805 * 9 7 5 13 13 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 14 14 C 1.34777 * 119.99873 * 275.00296 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14 19 19 C 1.34777 * 119.99871 * 179.97438 * 18 17 16 20 20 O 1.21771 * 120.00183 * 0.02562 * 19 18 17 21 21 C 1.41555 * 119.99993 * 179.97438 * 19 18 17 22 22 C 1.35624 * 119.99816 * 180.02562 * 21 19 18 23 23 C 1.41605 * 119.99840 * 180.02562 * 22 21 19 24 24 C 1.37953 * 126.10518 * 180.02562 * 23 22 21 25 25 C 1.40314 * 106.52920 * 179.97438 * 24 23 22 26 26 C 1.35150 * 107.20421 * 359.97438 * 25 24 23 27 27 O 1.34013 * 109.03687 * 359.77105 * 26 25 24 28 28 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 29 29 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 30 30 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 32 32 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 33 33 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00050 * 94.72411 * 13 3 2 35 35 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 36 36 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 37 37 H 1.09000 * 109.46497 * 299.99731 * 17 16 14 38 38 H 1.08987 * 109.47025 * 59.99846 * 17 16 14 39 39 H 0.96999 * 120.00085 * 359.97438 * 18 17 16 40 40 H 1.07999 * 119.99969 * 0.02562 * 21 19 18 41 41 H 1.07999 * 120.00215 * 0.02562 * 22 21 19 42 42 H 1.08001 * 126.73304 * 359.97438 * 24 23 22 43 43 H 1.08003 * 126.39383 * 179.97438 * 25 24 23 44 44 H 1.08004 * 125.47920 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8802 -1.3812 10 1 6.5967 0.1454 -0.2344 11 1 6.3979 0.2158 -2.6499 12 1 6.5003 2.2801 -1.3808 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0362 3.3376 2.6549 17 6 -1.3826 3.8945 2.5211 18 7 -1.7701 4.5495 3.7729 19 6 -2.9870 5.1173 3.8877 20 8 -3.7646 5.0855 2.9511 21 6 -3.3616 5.7498 5.0974 22 6 -4.5864 6.3207 5.2131 23 6 -4.9610 6.9539 6.4230 24 6 -6.1682 7.5710 6.6777 25 6 -6.0996 8.0546 7.9931 26 6 -4.8831 7.7215 8.4786 27 8 -4.2033 7.0556 7.5350 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0618 -2.9495 34 1 2.2704 2.1197 1.9991 35 1 0.0672 2.6129 3.4685 36 1 0.7276 4.1529 2.8679 37 1 -1.4131 4.6193 1.7076 38 1 -2.0741 3.0795 2.3079 39 1 -1.1509 4.5745 4.5191 40 1 -2.6722 5.7777 5.9282 41 1 -5.2760 6.2925 4.3824 42 1 -7.0024 7.6637 5.9980 43 1 -6.8744 8.5926 8.5193 44 1 -4.5191 7.9511 9.4692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492606936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:57 Heat of formation + Delta-G solvation = -76.291003 kcal Electronic energy + Delta-G solvation = -25200.671462 eV Core-core repulsion = 21311.873032 eV Total energy + Delta-G solvation = -3888.798430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.48848 -41.07966 -40.52740 -37.13107 -36.20125 -35.17360 -34.28073 -33.99061 -33.03333 -31.81796 -29.87247 -28.86476 -26.13709 -24.95277 -23.86111 -22.82339 -21.98138 -21.77862 -21.07537 -20.49809 -18.93935 -18.54786 -17.92192 -17.60319 -17.15571 -17.06650 -16.94978 -16.57636 -16.08782 -15.96272 -15.63042 -15.05368 -14.92004 -14.60943 -14.43368 -13.91928 -13.71653 -13.67730 -13.52882 -13.43687 -13.15130 -13.08802 -12.97776 -12.78342 -12.64649 -12.40323 -12.17395 -12.02488 -11.70331 -11.56810 -11.20876 -11.04151 -10.84537 -10.64890 -10.48045 -10.17825 -9.59058 -8.94712 -8.14157 -6.31690 -0.59059 1.16573 1.45954 1.47638 1.55361 1.71530 1.89913 2.01552 2.08526 2.41166 2.42262 2.86712 3.15346 3.67142 3.80051 3.98828 4.07979 4.12360 4.16437 4.17865 4.28897 4.50264 4.57665 4.58472 4.68746 4.78828 4.88046 4.88980 4.95764 5.04703 5.08029 5.10973 5.23053 5.27912 5.38454 5.45441 5.54245 5.58224 5.66001 5.81820 5.95957 6.08938 6.19377 6.55105 6.77244 7.03482 7.22921 7.36129 7.65140 8.90851 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.001739 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.822399 B =16101.910323 C =16599.974096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.497 3.503 15 O -0.593 6.593 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.708 5.708 19 C 0.543 3.457 20 O -0.597 6.597 21 C -0.216 4.216 22 C 0.020 3.980 23 C -0.043 4.043 24 C -0.160 4.160 25 C -0.233 4.233 26 C -0.008 4.008 27 O -0.179 6.179 28 H 0.046 0.954 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.406 0.594 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.421 0.579 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 13.758 26.279 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.475 6.475 16 C -0.174 4.174 17 C 0.019 3.981 18 N -0.360 5.360 19 C 0.335 3.665 20 O -0.480 6.480 21 C -0.237 4.237 22 C 0.000 4.000 23 C -0.091 4.091 24 C -0.179 4.179 25 C -0.252 4.252 26 C -0.077 4.077 27 O -0.075 6.075 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.259 0.741 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.187 0.813 43 H 0.194 0.806 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.399 13.465 24.790 31.231 hybrid contribution 1.133 -0.145 -0.289 1.178 sum -12.266 13.320 24.502 30.467 Atomic orbital electron populations 1.21684 0.97115 0.99039 1.00265 1.21783 0.93582 0.99310 1.01311 1.18348 0.93595 0.89140 0.81680 0.98675 1.21574 0.91460 1.38840 1.06679 0.90779 1.25791 1.03283 0.94472 0.95100 1.70057 1.37123 1.38370 1.09887 0.85428 0.79173 0.78403 0.77491 1.18816 1.21469 1.19679 1.46218 1.15681 1.55971 1.17417 1.21052 0.81750 0.78645 0.90194 1.90706 1.52536 1.61294 1.42926 1.21732 0.96808 1.03101 0.95770 1.20738 0.94897 0.96497 0.85983 1.45709 1.16650 1.56856 1.16825 1.17449 0.81710 0.78741 0.88580 1.90849 1.52663 1.61630 1.42888 1.21977 0.99398 1.04236 0.98087 1.20714 0.96354 0.90233 0.92660 1.19862 0.92570 1.08505 0.88206 1.22796 0.97506 0.99333 0.98311 1.22187 0.99894 1.07255 0.95822 1.25224 0.92124 0.95478 0.94888 1.84094 1.42662 1.59774 1.20944 0.93497 0.95885 0.93742 0.91237 0.93817 0.92708 0.75841 0.85092 0.85341 0.93274 0.93029 0.74097 0.82752 0.82893 0.81334 0.80601 0.73903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.95 2.24 44.24 0.10 14.05 16 4 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -28.43 8.73 25.60 0.22 -28.20 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.72 5.29 84.65 0.45 1.17 16 8 N -0.92 -52.54 11.29 21.45 0.24 -52.30 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.70 -27.21 5.02 -446.09 -2.24 -29.45 16 14 C 0.50 18.25 6.40 87.66 0.56 18.81 16 15 O -0.59 -27.93 13.12 -3.04 -0.04 -27.97 16 16 C -0.13 -3.03 5.81 29.85 0.17 -2.86 16 17 C 0.14 3.93 4.96 86.38 0.43 4.36 16 18 N -0.71 -14.41 5.55 -472.21 -2.62 -17.03 16 19 C 0.54 13.61 7.56 85.06 0.64 14.25 16 20 O -0.60 -20.87 16.11 -4.58 -0.07 -20.94 16 21 C -0.22 -3.93 9.41 22.48 0.21 -3.72 16 22 C 0.02 0.37 9.39 22.50 0.21 0.58 16 23 C -0.04 -0.68 6.84 23.03 0.16 -0.52 16 24 C -0.16 -2.03 10.90 22.71 0.25 -1.78 16 25 C -0.23 -2.08 10.87 22.06 0.24 -1.84 16 26 C -0.01 -0.07 12.06 67.11 0.81 0.74 16 27 O -0.18 -2.53 10.18 -6.10 -0.06 -2.59 16 28 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 29 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 30 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 32 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 34 H 0.41 12.68 8.54 -92.71 -0.79 11.88 16 35 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.42 4.86 8.43 -92.71 -0.78 4.08 16 40 H 0.15 1.94 7.72 -2.91 -0.02 1.92 16 41 H 0.15 2.89 7.46 -2.91 -0.02 2.87 16 42 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 44 H 0.24 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: -1.00 -79.00 374.71 1.93 -77.07 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.54 Total: 25.26 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.23 Total: 4.26 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.62 Total: -98.78 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.18 Total: -51.51 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -79.00 1.93 -77.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492606936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.780 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds