Wall clock time and date at job start Tue Mar 31 2020 12:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.47141 * 2 1 4 4 C 1.34632 * 117.00059 * 180.02562 * 3 2 1 5 5 O 1.21506 * 119.99808 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00374 * 180.02562 * 4 3 2 7 7 C 1.39439 * 120.00632 * 185.32021 * 6 4 3 8 8 C 1.39136 * 119.92171 * 33.50954 * 7 6 4 9 9 C 1.37665 * 120.07142 * 180.02562 * 8 7 6 10 10 C 1.39752 * 119.92793 * 359.97438 * 9 8 7 11 11 C 1.47590 * 120.07418 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00197 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99742 * 179.72547 * 11 10 9 14 14 C 1.46500 * 119.99845 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46718 * 35.00261 * 14 13 11 16 16 C 1.50691 * 109.46948 * 155.00016 * 14 13 11 17 17 H 1.07998 * 120.00551 * 0.02562 * 16 14 13 18 18 C 1.37882 * 120.00130 * 180.02562 * 16 14 13 19 19 N 1.31519 * 119.99665 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00170 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47397 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47058 * 119.99827 * 20 18 16 23 23 H 1.48499 * 109.47120 * 239.99357 * 20 18 16 24 24 C 1.52996 * 109.47078 * 275.00266 * 14 13 11 25 25 C 1.53000 * 109.47285 * 64.99811 * 24 14 13 26 26 C 1.39752 * 119.84905 * 0.27266 * 10 9 8 27 27 C 1.37664 * 119.92715 * 359.46697 * 26 10 9 28 28 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47417 * 300.00120 * 1 2 3 30 30 H 1.09003 * 109.47090 * 59.99808 * 1 2 3 31 31 H 1.08998 * 109.46929 * 239.99796 * 2 1 3 32 32 H 1.09003 * 109.47065 * 119.99637 * 2 1 3 33 33 H 0.97005 * 119.99616 * 5.31722 * 6 4 3 34 34 H 1.07995 * 119.96557 * 0.02951 * 8 7 6 35 35 H 1.08000 * 120.03539 * 179.97438 * 9 8 7 36 36 H 0.97003 * 119.99759 * 0.02562 * 13 11 10 37 37 H 0.97000 * 119.99866 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47339 * 185.00297 * 24 14 13 39 39 H 1.09004 * 109.47342 * 304.99544 * 24 14 13 40 40 H 1.09002 * 109.46639 * 180.02562 * 25 24 14 41 41 H 1.08997 * 109.46953 * 299.99815 * 25 24 14 42 42 H 1.08995 * 109.46775 * 60.00344 * 25 24 14 43 43 H 1.08007 * 120.03739 * 179.72150 * 26 10 9 44 44 H 1.07999 * 119.96327 * 180.22932 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0889 0.5818 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.2414 2.9756 -0.1126 8 6 5.9995 2.0957 -0.8787 9 6 7.3597 2.2749 -0.9915 10 6 7.9790 3.3425 -0.3358 11 6 9.4372 3.5374 -0.4541 12 8 10.1012 2.7685 -1.1220 13 7 10.0321 4.5707 0.1744 14 6 11.4796 4.7639 0.0575 15 1 11.8062 4.4682 -0.9395 16 6 11.8126 6.2158 0.2852 17 1 11.0249 6.9239 0.4963 18 6 13.1229 6.6404 0.2240 19 7 14.0823 5.7781 -0.0326 20 14 13.5358 8.4401 0.5069 21 1 12.2874 9.1981 0.7754 22 1 14.4492 8.5613 1.6715 23 1 14.1991 8.9917 -0.7018 24 6 12.1946 3.9065 1.1037 25 6 11.9578 2.4261 0.7982 26 6 7.2154 4.2214 0.4371 27 6 5.8548 4.0396 0.5413 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2764 3.5587 0.0785 34 1 5.5203 1.2712 -1.3855 35 1 7.9476 1.5913 -1.5859 36 1 9.5019 5.1860 0.7047 37 1 15.0042 6.0767 -0.0752 38 1 13.2638 4.1166 1.0765 39 1 11.8036 4.1402 2.0939 40 1 12.4669 1.8154 1.5438 41 1 10.8886 2.2160 0.8254 42 1 12.3490 2.1924 -0.1920 43 1 7.6915 5.0449 0.9487 44 1 5.2635 4.7206 1.1354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495322793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:05 Heat of formation + Delta-G solvation = -115.982611 kcal Electronic energy + Delta-G solvation = -26130.906070 eV Core-core repulsion = 22240.386482 eV Total energy + Delta-G solvation = -3890.519588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11124 -41.07033 -39.71303 -37.82544 -36.92368 -36.06724 -34.34700 -33.04495 -32.58768 -31.97092 -30.72943 -28.81645 -25.76479 -24.95576 -23.89102 -23.83847 -22.55985 -21.90993 -21.09310 -20.11942 -19.44015 -18.69593 -17.95830 -17.73030 -17.27861 -17.19999 -16.45271 -16.25761 -15.78203 -15.61477 -15.19199 -14.90033 -14.82522 -14.57575 -14.48094 -14.12659 -13.77268 -13.62950 -13.53960 -13.42557 -13.15778 -12.96997 -12.85305 -12.69104 -12.55760 -12.34777 -12.13843 -12.04803 -11.89833 -11.60225 -11.55987 -11.46273 -11.02250 -10.75765 -10.51399 -10.04626 -9.69047 -9.26008 -8.13906 -6.31158 -0.26342 0.35744 0.90450 1.45915 1.46595 1.47487 1.59182 2.04642 2.36907 2.63453 2.90139 2.98930 3.15940 3.78177 3.91498 3.95063 4.02188 4.07315 4.25795 4.30665 4.37639 4.43086 4.50028 4.57536 4.72580 4.76189 4.93649 4.97862 4.98931 5.08570 5.10608 5.14418 5.25366 5.26904 5.38727 5.42997 5.45094 5.57615 5.63616 5.79403 5.84027 5.95670 6.14851 6.18047 6.76667 6.98995 7.07161 7.35189 7.57083 8.91853 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.002274 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.343901 B =12311.298218 C =12933.737232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 O -0.362 6.362 4 C 0.647 3.353 5 O -0.584 6.584 6 N -0.633 5.633 7 C 0.179 3.821 8 C -0.137 4.137 9 C -0.053 4.053 10 C -0.157 4.157 11 C 0.540 3.460 12 O -0.589 6.589 13 N -0.697 5.697 14 C 0.277 3.723 15 H -0.001 1.001 16 C -0.545 4.545 17 H 0.075 0.925 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.258 1.258 22 H -0.280 1.280 23 H -0.286 1.286 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.059 4.059 27 C -0.129 4.129 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.437 0.563 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.403 0.597 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.155 0.845 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.715 -4.390 3.393 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.276 6.276 4 C 0.402 3.598 5 O -0.474 6.474 6 N -0.286 5.286 7 C 0.085 3.915 8 C -0.158 4.158 9 C -0.073 4.073 10 C -0.160 4.160 11 C 0.329 3.671 12 O -0.472 6.472 13 N -0.346 5.346 14 C 0.173 3.827 15 H 0.017 0.983 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.554 5.554 20 Si 0.797 3.203 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.212 1.212 24 C -0.159 4.159 25 C -0.182 4.182 26 C -0.078 4.078 27 C -0.149 4.149 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.278 0.722 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.240 0.760 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.172 0.828 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -27.844 -5.463 2.905 28.523 hybrid contribution 0.551 0.869 -0.017 1.029 sum -27.293 -4.594 2.888 27.827 Atomic orbital electron populations 1.21857 0.89916 1.04612 1.03923 1.23332 0.96737 0.77196 1.02947 1.86266 1.19987 1.35132 1.86216 1.18220 0.81923 0.84002 0.75703 1.91051 1.60477 1.40679 1.55151 1.41719 1.05792 1.06827 1.74227 1.17679 0.81637 0.96603 0.95607 1.21027 0.93287 1.01168 1.00282 1.21047 0.94155 0.95575 0.96541 1.20048 0.92258 0.99671 1.04066 1.18693 0.88032 0.81044 0.79368 1.90719 1.66758 1.46569 1.43115 1.46164 1.10225 1.28077 1.50108 1.18420 0.75655 0.94633 0.93973 0.98349 1.21596 0.93600 0.93239 1.49879 0.90695 1.25798 0.96061 1.02384 0.94404 1.70066 1.00632 1.35901 1.48804 0.85300 0.78539 0.79095 0.77399 1.18149 1.20574 1.21238 1.21788 1.02898 0.93218 0.98033 1.21687 1.00018 0.97310 0.99186 1.21393 0.93659 0.97499 0.95281 1.21068 0.94136 0.99231 1.00497 0.87927 0.91001 0.91090 0.91170 0.91136 0.72245 0.84950 0.85960 0.76016 0.92656 0.90851 0.93861 0.93571 0.94062 0.95559 0.82754 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 71.98 0.74 -0.14 16 2 C 0.07 0.89 6.19 71.98 0.45 1.33 16 3 O -0.36 -5.76 10.27 -55.42 -0.57 -6.33 16 4 C 0.65 13.18 8.47 129.79 1.10 14.28 16 5 O -0.58 -16.24 13.81 19.82 0.27 -15.97 16 6 N -0.63 -9.95 5.32 -429.48 -2.29 -12.23 16 7 C 0.18 3.72 6.27 38.36 0.24 3.96 16 8 C -0.14 -3.67 8.62 22.35 0.19 -3.48 16 9 C -0.05 -1.68 9.58 22.50 0.22 -1.46 16 10 C -0.16 -5.05 5.88 -20.08 -0.12 -5.17 16 11 C 0.54 22.62 6.32 86.71 0.55 23.17 16 12 O -0.59 -29.58 13.49 -3.98 -0.05 -29.64 16 13 N -0.70 -29.16 4.97 -449.24 -2.23 -31.39 16 14 C 0.28 14.31 2.24 44.24 0.10 14.41 16 15 H 0.00 -0.09 7.57 -2.39 -0.02 -0.10 16 16 C -0.54 -28.56 8.73 25.60 0.22 -28.33 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C 0.01 0.72 5.29 84.66 0.45 1.17 16 19 N -0.92 -52.46 11.29 21.45 0.24 -52.22 16 20 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 24 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 25 C -0.12 -5.85 8.52 71.98 0.61 -5.23 16 26 C -0.06 -1.37 9.53 22.50 0.21 -1.16 16 27 C -0.13 -2.25 9.94 22.35 0.22 -2.03 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.44 3.48 8.92 -92.70 -0.83 2.66 16 34 H 0.13 3.66 6.41 -2.91 -0.02 3.64 16 35 H 0.12 4.16 7.64 -2.91 -0.02 4.14 16 36 H 0.40 13.88 6.56 -92.71 -0.61 13.27 16 37 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.89 5.65 -2.39 -0.01 1.88 16 42 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 43 H 0.15 2.95 6.39 -2.91 -0.02 2.93 16 44 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -74.19 365.39 2.36 -71.83 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.39 Total: 26.76 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.35 Total: 5.45 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -4.28 Total: -95.84 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.35 Total: -51.94 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -74.19 2.36 -71.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495322793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.150 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds