Wall clock time and date at job start Tue Mar 31 2020 12:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47514 * 2 1 4 4 H 1.08998 * 109.47260 * 182.90676 * 3 2 1 5 5 C 1.50695 * 109.47224 * 302.91119 * 3 2 1 6 6 H 1.08004 * 120.00029 * 119.99526 * 5 3 2 7 7 C 1.37876 * 120.00075 * 299.99435 * 5 3 2 8 8 N 1.31518 * 120.00159 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99828 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47052 * 89.99927 * 9 7 5 11 11 H 1.48501 * 109.47051 * 209.99928 * 9 7 5 12 12 H 1.48498 * 109.47067 * 329.99922 * 9 7 5 13 13 N 1.46903 * 109.46555 * 62.91071 * 3 2 1 14 14 C 1.46898 * 111.00508 * 80.40076 * 13 3 2 15 15 H 1.08998 * 109.46739 * 329.66594 * 14 13 3 16 16 C 1.53006 * 109.47155 * 89.66067 * 14 13 3 17 17 C 1.50696 * 109.47628 * 209.66322 * 14 13 3 18 18 O 1.21291 * 119.99609 * 359.97438 * 17 14 13 19 19 N 1.34775 * 120.00219 * 179.97438 * 17 14 13 20 20 C 1.40092 * 119.99974 * 185.11619 * 19 17 14 21 21 C 1.38840 * 120.00405 * 206.71460 * 20 19 17 22 22 C 1.38171 * 120.07450 * 179.76589 * 21 20 19 23 23 C 1.38563 * 120.11477 * 0.42527 * 22 21 20 24 24 C 1.39283 * 119.94329 * 359.57137 * 23 22 21 25 25 C 1.38495 * 119.89340 * 0.21873 * 24 23 22 26 26 O 1.36514 * 108.64132 * 180.25352 * 24 23 22 27 27 C 1.43976 * 105.49629 * 342.69494 * 26 24 23 28 28 O 1.36598 * 131.44237 * 179.87931 * 23 22 21 29 29 H 1.08996 * 109.46982 * 305.06924 * 1 2 3 30 30 H 1.09004 * 109.46932 * 65.06262 * 1 2 3 31 31 H 1.09001 * 109.47082 * 185.06132 * 1 2 3 32 32 H 1.09010 * 109.47344 * 240.00260 * 2 1 3 33 33 H 1.09001 * 109.46916 * 120.00860 * 2 1 3 34 34 H 0.96997 * 119.99894 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99864 * 204.35375 * 13 3 2 36 36 H 1.08999 * 109.47104 * 300.00262 * 16 14 13 37 37 H 1.08997 * 109.47025 * 60.00077 * 16 14 13 38 38 H 1.08998 * 109.47238 * 180.02562 * 16 14 13 39 39 H 0.96998 * 119.99673 * 5.11276 * 19 17 14 40 40 H 1.08000 * 119.96693 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.94749 * 180.28312 * 22 21 20 42 42 H 1.07999 * 120.00633 * 180.02562 * 25 24 23 43 43 H 1.09001 * 110.57449 * 268.59011 * 27 26 24 44 44 H 1.09005 * 110.57001 * 145.72022 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1288 1.4428 -0.0521 5 6 1.4798 2.1734 -1.1927 6 1 0.8647 3.0495 -1.0492 7 6 1.7524 1.7238 -2.4673 8 7 1.2638 2.3621 -3.5083 9 14 2.8157 0.2082 -2.7156 10 1 1.9550 -1.0016 -2.7407 11 1 3.5471 0.3221 -4.0030 12 1 3.7904 0.0993 -1.6005 13 7 1.6087 2.1142 1.2331 14 6 2.4844 1.7620 2.3587 15 1 2.8763 0.7554 2.2129 16 6 3.6455 2.7557 2.4319 17 6 1.6974 1.8136 3.6428 18 8 0.5226 2.1147 3.6224 19 7 2.2989 1.5251 4.8139 20 6 1.5450 1.4681 5.9933 21 6 2.1489 1.7261 7.2165 22 6 1.4055 1.6750 8.3801 23 6 0.0576 1.3576 8.3307 24 6 -0.5511 1.0984 7.1050 25 6 0.1940 1.1542 5.9389 26 8 -1.8695 0.8196 7.3229 27 6 -1.9705 0.5093 8.7252 28 8 -0.8804 1.2407 9.3167 29 1 -0.3633 0.5904 0.8411 30 1 -0.3633 0.4333 -0.9319 31 1 -0.3633 -1.0237 0.0907 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 1.4553 2.0455 -4.4050 35 1 1.5690 3.1143 1.1051 36 1 4.2148 2.7183 1.5031 37 1 3.2537 3.7623 2.5776 38 1 4.2956 2.4940 3.2668 39 1 3.2539 1.3570 4.8401 40 1 3.2001 1.9702 7.2584 41 1 1.8764 1.8804 9.3301 42 1 -0.2762 0.9540 4.9874 43 1 -1.8478 -0.5611 8.8905 44 1 -2.9242 0.8528 9.1258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517583102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:51 Heat of formation + Delta-G solvation = -77.634857 kcal Electronic energy + Delta-G solvation = -27046.054691 eV Core-core repulsion = 23157.197987 eV Total energy + Delta-G solvation = -3888.856704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.12914 -41.45023 -39.04817 -38.05058 -37.26011 -35.51230 -34.98631 -33.55423 -31.52633 -30.80308 -29.67240 -28.07458 -26.79636 -25.40047 -25.03291 -24.18016 -23.47315 -21.59654 -20.85039 -19.68968 -19.02401 -18.72486 -18.34590 -17.68151 -17.47436 -17.11549 -16.57627 -16.20467 -15.69231 -15.47161 -15.37032 -15.29988 -14.95671 -14.82574 -14.64285 -14.58072 -14.10228 -14.00780 -13.93115 -13.72127 -13.57106 -13.27085 -12.87075 -12.59328 -12.54633 -12.41514 -12.27877 -12.21836 -12.07018 -11.91938 -11.22862 -10.97219 -10.91657 -10.72336 -10.60355 -9.72408 -9.05992 -8.73533 -8.26239 -6.29055 0.03335 0.20233 1.34328 1.35858 1.46777 1.60124 1.70986 2.01418 2.33955 2.54293 2.64558 3.09616 3.47754 3.50461 3.72411 3.83620 4.04206 4.05755 4.09884 4.15979 4.16559 4.32566 4.36394 4.43621 4.55975 4.63766 4.66219 4.75318 4.84296 4.95619 5.10349 5.11098 5.14457 5.19788 5.24616 5.26139 5.32743 5.38952 5.60519 5.63227 5.74747 5.98309 6.13261 6.43580 6.51746 6.69623 6.83277 7.21892 7.35699 8.90695 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002830 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.944069 B = 9889.884488 C =10473.889665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 C 0.197 3.803 4 H 0.011 0.989 5 C -0.507 4.507 6 H 0.034 0.966 7 C 0.016 3.984 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.301 1.301 12 H -0.238 1.238 13 N -0.668 5.668 14 C 0.067 3.933 15 H 0.117 0.883 16 C -0.170 4.170 17 C 0.518 3.482 18 O -0.537 6.537 19 N -0.654 5.654 20 C 0.161 3.839 21 C -0.124 4.124 22 C -0.071 4.071 23 C -0.006 4.006 24 C 0.030 3.970 25 C -0.142 4.142 26 O -0.335 6.335 27 C 0.205 3.795 28 O -0.320 6.320 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.340 0.660 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.433 0.567 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -5.932 27.553 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.154 4.154 3 C 0.088 3.912 4 H 0.029 0.971 5 C -0.545 4.545 6 H 0.052 0.948 7 C -0.181 4.181 8 N -0.590 5.590 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.229 1.229 12 H -0.162 1.162 13 N -0.299 5.299 14 C -0.047 4.047 15 H 0.134 0.866 16 C -0.229 4.229 17 C 0.306 3.694 18 O -0.411 6.411 19 N -0.302 5.302 20 C 0.065 3.935 21 C -0.144 4.144 22 C -0.090 4.090 23 C -0.051 4.051 24 C -0.015 4.015 25 C -0.163 4.163 26 O -0.252 6.252 27 C 0.094 3.906 28 O -0.237 6.237 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.202 0.798 41 H 0.189 0.811 42 H 0.141 0.859 43 H 0.122 0.878 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.657 -6.122 27.495 28.731 hybrid contribution 0.503 -0.036 -1.232 1.331 sum 6.160 -6.158 26.263 27.670 Atomic orbital electron populations 1.21366 0.95987 0.99129 1.01131 1.21791 0.97147 0.97486 0.98949 1.19401 0.93251 0.91614 0.86929 0.97128 1.21173 1.30865 1.12024 0.90468 0.94769 1.25716 0.96976 0.99881 0.95516 1.70048 1.47351 1.42604 0.99002 0.85916 0.79709 0.79855 0.77344 1.19791 1.22944 1.16157 1.59963 1.52056 1.13899 1.03939 1.21580 0.91700 1.02642 0.88776 0.86567 1.22413 0.97400 0.98645 1.04424 1.21320 0.87725 0.74912 0.85436 1.90696 1.18192 1.45541 1.86698 1.43428 1.12855 1.69551 1.04377 1.17448 0.90005 0.98619 0.87399 1.21004 1.02524 1.02623 0.88260 1.20252 0.87664 1.00168 1.00889 1.20094 0.92816 1.06904 0.85310 1.19729 0.83381 1.03239 0.95118 1.20119 0.93903 1.05638 0.96672 1.87352 1.22603 1.85853 1.29381 1.26079 0.92656 0.98137 0.73694 1.87313 1.27514 1.73959 1.34908 0.92871 0.95203 0.93690 0.94544 0.91849 0.92668 0.84096 0.91612 0.92435 0.87963 0.72685 0.79759 0.81083 0.85878 0.87814 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.45 71.98 0.68 -4.48 16 2 C -0.12 -4.77 5.21 30.59 0.16 -4.61 16 3 C 0.20 8.60 1.73 44.17 0.08 8.67 16 4 H 0.01 0.47 6.55 -2.39 -0.02 0.45 16 5 C -0.51 -27.96 7.87 25.60 0.20 -27.76 16 6 H 0.03 2.14 7.94 -2.91 -0.02 2.12 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 9 Si 0.94 43.49 24.34 68.60 1.67 45.16 16 10 H -0.27 -12.21 6.89 99.48 0.69 -11.52 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.24 -9.69 6.53 99.48 0.65 -9.04 16 13 N -0.67 -25.93 4.82 -477.17 -2.30 -28.23 16 14 C 0.07 1.84 2.79 44.17 0.12 1.97 16 15 H 0.12 2.86 6.78 -2.39 -0.02 2.84 16 16 C -0.17 -3.52 9.05 71.98 0.65 -2.87 16 17 C 0.52 14.74 7.02 87.66 0.62 15.35 16 18 O -0.54 -20.91 13.69 -3.07 -0.04 -20.95 16 19 N -0.65 -12.44 5.29 -303.45 -1.61 -14.05 16 20 C 0.16 3.48 6.40 38.10 0.24 3.73 16 21 C -0.12 -1.73 9.94 22.40 0.22 -1.51 16 22 C -0.07 -1.10 10.05 22.33 0.22 -0.88 16 23 C -0.01 -0.14 7.15 22.60 0.16 0.02 16 24 C 0.03 0.84 7.15 22.58 0.16 1.00 16 25 C -0.14 -4.17 8.71 22.47 0.20 -3.97 16 26 O -0.34 -9.13 11.40 -76.21 -0.87 -10.00 16 27 C 0.20 3.49 8.89 113.37 1.01 4.50 16 28 O -0.32 -6.76 11.41 -77.21 -0.88 -7.64 16 29 H 0.05 2.40 7.55 -2.39 -0.02 2.38 16 30 H 0.03 1.46 7.33 -2.38 -0.02 1.44 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.55 3.34 -2.38 -0.01 1.54 16 33 H 0.06 2.19 7.12 -2.39 -0.02 2.17 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.34 14.01 8.00 -89.69 -0.72 13.29 16 36 H 0.06 1.52 7.73 -2.39 -0.02 1.50 16 37 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16 38 H 0.10 1.18 7.46 -2.39 -0.02 1.16 16 39 H 0.43 4.20 8.07 -92.71 -0.75 3.45 16 40 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.12 4.46 5.91 -2.91 -0.02 4.44 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.16 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -78.98 353.05 0.97 -78.01 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.49 Total: 25.78 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.19 Total: -9.45 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.61 Total: -100.91 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.79 Total: -38.59 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.16 kcal Total: -78.98 0.97 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517583102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.380 kcal (2) G-P(sol) polarization free energy of solvation -78.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds