Wall clock time and date at job start Tue Mar 31 2020 12:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99908 * 2 1 4 4 C 1.38821 * 120.02017 * 359.72768 * 3 2 1 5 5 C 1.38181 * 120.09695 * 179.72082 * 4 3 2 6 6 C 1.38148 * 120.12810 * 0.54998 * 5 4 3 7 7 C 1.38944 * 120.03663 * 359.72491 * 6 5 4 8 8 N 1.39723 * 120.05345 * 180.02562 * 7 6 5 9 9 C 1.34767 * 120.00393 * 209.39276 * 8 7 6 10 10 O 1.21379 * 119.99995 * 5.43559 * 9 8 7 11 11 C 1.49359 * 120.00133 * 185.43618 * 9 8 7 12 12 O 1.21357 * 119.99843 * 0.83391 * 11 9 8 13 13 N 1.34777 * 119.99938 * 180.83726 * 11 9 8 14 14 C 1.46501 * 119.99868 * 354.67161 * 13 11 9 15 15 C 1.50702 * 109.47007 * 83.15196 * 14 13 11 16 16 H 1.07995 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99771 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99962 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00280 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47095 * 90.00367 * 19 17 15 21 21 H 1.48498 * 109.47108 * 210.00187 * 19 17 15 22 22 H 1.48494 * 109.47115 * 330.00491 * 19 17 15 23 23 C 1.46501 * 119.99637 * 174.67579 * 13 11 9 24 24 C 1.53007 * 109.47123 * 124.58618 * 23 13 11 25 25 C 1.53002 * 109.46922 * 244.58050 * 23 13 11 26 26 C 1.38570 * 120.01558 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47306 * 300.00214 * 1 2 3 28 28 H 1.09008 * 109.46769 * 59.99822 * 1 2 3 29 29 H 1.08993 * 109.47121 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.94659 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.93510 * 180.27371 * 5 4 3 32 32 H 1.08002 * 119.98153 * 179.74596 * 6 5 4 33 33 H 0.97000 * 119.99727 * 29.38581 * 8 7 6 34 34 H 1.09007 * 109.46736 * 203.14679 * 14 13 11 35 35 H 1.08994 * 109.47313 * 323.14173 * 14 13 11 36 36 H 0.97002 * 120.00455 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.47366 * 4.58757 * 23 13 11 38 38 H 1.09003 * 109.46772 * 59.99481 * 24 23 13 39 39 H 1.08995 * 109.47093 * 179.97438 * 24 23 13 40 40 H 1.09003 * 109.46760 * 300.00073 * 24 23 13 41 41 H 1.09000 * 109.46710 * 60.00235 * 25 23 13 42 42 H 1.09004 * 109.47222 * 179.97438 * 25 23 13 43 43 H 1.08995 * 109.47271 * 300.00163 * 25 23 13 44 44 H 1.08001 * 120.06513 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3754 -0.0057 5 6 1.9159 3.6075 0.0001 6 6 3.2952 3.6848 0.0002 7 6 4.0569 2.5227 0.0001 8 7 5.4520 2.6005 0.0007 9 6 6.1817 1.6229 -0.5721 10 8 5.6283 0.7259 -1.1741 11 6 7.6714 1.6432 -0.4661 12 8 8.2239 2.5318 0.1487 13 7 8.4020 0.6747 -1.0533 14 6 7.7334 -0.4599 -1.6951 15 6 7.3167 -0.0733 -3.0908 16 1 7.5283 0.9184 -3.4624 17 6 6.6654 -0.9858 -3.8933 18 7 6.3012 -0.6483 -5.1112 19 14 6.3000 -2.7014 -3.2509 20 1 4.9709 -2.7092 -2.5885 21 1 6.2947 -3.6630 -4.3824 22 1 7.3437 -3.0957 -2.2710 23 6 9.8647 0.7566 -1.0495 24 6 10.4454 -0.5191 -0.4359 25 6 10.3707 0.9079 -2.4855 26 6 3.4298 1.2838 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2118 2.3182 -0.0106 31 1 1.3255 4.5117 0.0001 32 1 3.7818 4.6490 0.0006 33 1 5.8953 3.3582 0.4133 34 1 8.4187 -1.3063 -1.7418 35 1 6.8524 -0.7372 -1.1164 36 1 5.8433 -1.2904 -5.6760 37 1 10.1789 1.6185 -0.4609 38 1 10.1312 -1.3810 -1.0246 39 1 11.5337 -0.4583 -0.4336 40 1 10.0849 -0.6269 0.5871 41 1 9.9570 1.8167 -2.9226 42 1 11.4590 0.9693 -2.4827 43 1 10.0565 0.0460 -3.0741 44 1 4.0193 0.3789 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526112545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:16 Heat of formation + Delta-G solvation = -78.550496 kcal Electronic energy + Delta-G solvation = -27799.749411 eV Core-core repulsion = 23910.853001 eV Total energy + Delta-G solvation = -3888.896409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.20848 -41.04919 -39.91765 -38.36944 -37.80171 -35.57543 -34.75818 -33.07228 -31.70203 -30.50559 -29.82140 -28.13777 -28.07773 -26.32980 -24.56644 -23.99366 -22.97612 -21.72187 -20.46627 -19.52594 -19.07553 -18.63158 -18.16434 -17.38133 -16.98555 -16.84159 -16.70441 -16.64583 -16.39061 -15.89041 -15.26139 -15.24407 -14.94648 -14.53217 -14.48422 -14.44681 -13.97317 -13.86045 -13.66621 -13.40748 -13.21589 -13.02358 -12.77766 -12.73758 -12.67435 -12.37301 -12.31768 -12.19959 -11.97019 -11.90441 -11.73032 -11.52146 -11.29592 -10.73465 -10.29405 -9.65582 -9.45056 -9.04861 -8.23743 -6.22324 -0.00073 0.44511 0.66260 1.28838 1.35082 1.40295 1.43191 2.14537 2.29763 2.37121 2.58414 2.81429 3.14243 3.34244 3.88363 3.96790 4.11295 4.18865 4.21266 4.26333 4.35337 4.39328 4.42916 4.51733 4.53420 4.63765 4.71534 4.80139 4.83184 4.91106 4.96811 5.05047 5.22034 5.26513 5.30266 5.33619 5.42938 5.44846 5.50198 5.53952 5.82101 6.07346 6.12810 6.38798 6.46273 6.72925 6.74255 7.00389 7.37542 8.93339 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.004950 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.875230 B = 5655.379446 C = 7192.613300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.131 3.869 4 C -0.223 4.223 5 C -0.051 4.051 6 C -0.182 4.182 7 C 0.174 3.826 8 N -0.642 5.642 9 C 0.486 3.514 10 O -0.472 6.472 11 C 0.508 3.492 12 O -0.555 6.555 13 N -0.556 5.556 14 C 0.211 3.789 15 C -0.490 4.490 16 H 0.028 0.972 17 C 0.021 3.979 18 N -0.948 5.948 19 Si 0.929 3.071 20 H -0.283 1.283 21 H -0.282 1.282 22 H -0.236 1.236 23 C 0.124 3.876 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.195 4.195 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.159 0.841 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.430 0.570 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 5.573 13.944 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.085 3.915 4 C -0.242 4.242 5 C -0.069 4.069 6 C -0.202 4.202 7 C 0.080 3.920 8 N -0.290 5.290 9 C 0.268 3.732 10 O -0.343 6.343 11 C 0.291 3.709 12 O -0.436 6.436 13 N -0.286 5.286 14 C 0.089 3.911 15 C -0.529 4.529 16 H 0.047 0.953 17 C -0.176 4.176 18 N -0.589 5.589 19 Si 0.754 3.246 20 H -0.210 1.210 21 H -0.208 1.208 22 H -0.159 1.159 23 C 0.023 3.977 24 C -0.211 4.211 25 C -0.206 4.206 26 C -0.216 4.216 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.176 0.824 31 H 0.189 0.811 32 H 0.173 0.827 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.057 5.039 13.661 15.770 hybrid contribution -0.360 -0.472 -0.414 0.724 sum -6.418 4.567 13.247 15.412 Atomic orbital electron populations 1.23377 0.76025 1.05470 1.02678 1.86073 1.23982 1.27380 1.88629 1.18933 0.91339 0.85460 0.95772 1.21549 1.01350 0.91455 1.09824 1.21169 0.93265 0.98180 0.94328 1.21139 0.94681 0.96716 1.07653 1.17626 0.81990 0.93998 0.98414 1.43063 1.04417 1.25144 1.56417 1.20518 0.89232 0.83456 0.79964 1.90934 1.72532 1.34555 1.36269 1.19832 0.87709 0.82870 0.80537 1.90633 1.72893 1.36666 1.43392 1.48089 1.07536 1.22056 1.50909 1.19955 0.93407 0.85154 0.92539 1.21119 1.36047 0.98771 0.96957 0.95324 1.25512 0.94890 1.02464 0.94723 1.70032 1.42283 1.36919 1.09704 0.85991 0.79709 0.80186 0.78719 1.20968 1.20806 1.15942 1.21409 0.77166 1.01061 0.98102 1.22114 1.02516 0.95931 1.00516 1.22032 1.01714 1.01547 0.95271 1.20366 0.93095 0.97959 1.10199 0.90511 0.91684 0.86892 0.82354 0.81093 0.82688 0.73035 0.93263 0.93551 0.92871 0.88250 0.92508 0.88258 0.92199 0.94952 0.88729 0.92888 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.35 -10.93 10.49 -92.45 -0.97 -11.90 16 3 C 0.13 4.20 6.68 22.49 0.15 4.35 16 4 C -0.22 -5.19 9.04 22.40 0.20 -4.98 16 5 C -0.05 -1.04 10.03 22.23 0.22 -0.82 16 6 C -0.18 -4.45 9.95 22.42 0.22 -4.23 16 7 C 0.17 5.78 6.35 38.20 0.24 6.02 16 8 N -0.64 -21.90 5.33 -304.88 -1.63 -23.53 16 9 C 0.49 20.65 7.48 87.24 0.65 21.30 16 10 O -0.47 -23.65 9.54 -3.34 -0.03 -23.68 16 11 C 0.51 21.21 7.67 87.24 0.67 21.88 16 12 O -0.55 -22.31 15.83 -3.27 -0.05 -22.36 16 13 N -0.56 -23.15 2.38 -803.80 -1.91 -25.06 16 14 C 0.21 9.94 3.18 85.63 0.27 10.22 16 15 C -0.49 -27.89 7.38 25.60 0.19 -27.70 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 17 C 0.02 1.26 5.47 84.65 0.46 1.72 16 18 N -0.95 -60.46 13.96 21.44 0.30 -60.16 16 19 Si 0.93 45.50 27.47 68.60 1.88 47.39 16 20 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 23 C 0.12 4.20 3.25 44.99 0.15 4.34 16 24 C -0.15 -4.13 9.10 71.98 0.66 -3.47 16 25 C -0.15 -5.04 8.92 71.98 0.64 -4.40 16 26 C -0.20 -7.37 8.61 22.50 0.19 -7.18 16 27 H 0.08 1.05 7.67 -2.39 -0.02 1.04 16 28 H 0.06 1.07 7.65 -2.38 -0.02 1.05 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.16 2.55 6.29 -2.91 -0.02 2.54 16 31 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.43 12.05 8.28 -92.71 -0.77 11.28 16 34 H 0.05 2.19 5.26 -2.38 -0.01 2.17 16 35 H 0.05 2.31 5.29 -2.39 -0.01 2.30 16 36 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.10 3.24 6.91 -2.39 -0.02 3.22 16 38 H 0.06 1.65 6.50 -2.39 -0.02 1.63 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.05 2.07 7.30 -2.39 -0.02 2.05 16 44 H 0.11 4.94 6.13 -2.91 -0.02 4.92 16 Total: -1.00 -77.95 359.14 3.84 -74.11 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.21 Total: 26.67 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.04 Total: 18.52 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.24 Total: -108.75 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -1.05 Total: -57.94 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -77.95 3.84 -74.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.441 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds