Wall clock time and date at job start Tue Mar 31 2020 12:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21289 * 120.00053 * 2 1 4 4 N 1.34775 * 119.99927 * 179.97438 * 2 1 3 5 5 C 1.40137 * 119.99993 * 185.99205 * 4 2 1 6 6 C 1.39105 * 119.92351 * 29.81817 * 5 4 2 7 7 C 1.37988 * 120.32201 * 180.02562 * 6 5 4 8 8 C 1.38699 * 120.16244 * 359.97438 * 7 6 5 9 9 O 1.35725 * 120.07558 * 179.97438 * 8 7 6 10 10 C 1.40104 * 119.84431 * 359.97438 * 8 7 6 11 11 C 1.47540 * 120.15862 * 179.97438 * 10 8 7 12 12 O 1.21584 * 120.00394 * 24.56662 * 11 10 8 13 13 N 1.34778 * 119.99570 * 204.56359 * 11 10 8 14 14 C 1.46511 * 119.99677 * 145.29314 * 13 11 10 15 15 C 1.50698 * 109.46983 * 89.99663 * 14 13 11 16 16 H 1.07998 * 120.00356 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99729 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99794 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47551 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47230 * 119.99879 * 19 17 15 22 22 H 1.48500 * 109.47013 * 239.99511 * 19 17 15 23 23 C 1.46494 * 120.00277 * 325.28738 * 13 11 10 24 24 C 1.52995 * 109.47400 * 324.12717 * 23 13 11 25 25 C 1.52998 * 109.47078 * 84.13077 * 23 13 11 26 26 C 1.38391 * 119.91911 * 210.05128 * 5 4 2 27 27 H 1.09000 * 109.47142 * 240.00634 * 1 2 3 28 28 H 1.09002 * 109.46841 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46925 * 120.00190 * 1 2 3 30 30 H 0.97000 * 120.00197 * 5.99216 * 4 2 1 31 31 H 1.07995 * 119.83444 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.91444 * 179.97438 * 7 6 5 33 33 H 0.96695 * 114.00025 * 270.02104 * 9 8 7 34 34 H 1.08991 * 109.46676 * 209.99874 * 14 13 11 35 35 H 1.08995 * 109.46806 * 329.99468 * 14 13 11 36 36 H 0.97002 * 119.99649 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47420 * 204.12567 * 23 13 11 38 38 H 1.09007 * 109.47167 * 41.85935 * 24 23 13 39 39 H 1.08996 * 109.47595 * 161.85748 * 24 23 13 40 40 H 1.09001 * 109.47111 * 281.86244 * 24 23 13 41 41 H 1.08994 * 109.47442 * 90.10633 * 25 23 13 42 42 H 1.09000 * 109.47432 * 210.10842 * 25 23 13 43 43 H 1.09003 * 109.47161 * 330.10386 * 25 23 13 44 44 H 1.08001 * 120.08526 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5765 -1.1705 0.1272 6 6 4.2109 -0.1585 0.8403 7 6 5.5847 -0.1534 0.9698 8 6 6.3432 -1.1591 0.3893 9 8 7.6944 -1.1521 0.5173 10 6 5.7113 -2.1823 -0.3296 11 6 6.5114 -3.2552 -0.9504 12 8 7.6090 -3.5302 -0.5056 13 7 6.0254 -3.9307 -2.0106 14 6 6.9328 -4.3895 -3.0654 15 6 7.4318 -5.7719 -2.7325 16 1 7.1053 -6.2602 -1.8263 17 6 8.3051 -6.4135 -3.5851 18 7 8.7023 -5.8190 -4.6890 19 14 8.9231 -8.1274 -3.1729 20 1 8.3298 -8.5713 -1.8860 21 1 8.5271 -9.0689 -4.2508 22 1 10.4032 -8.1047 -3.0546 23 6 4.5899 -4.2062 -2.1083 24 6 4.0272 -4.4816 -0.7125 25 6 3.8784 -2.9954 -2.7153 26 6 4.3207 -2.1778 -0.4615 27 1 -0.3633 -0.5137 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6999 -2.0050 -0.0868 31 1 3.6254 0.6273 1.2941 32 1 6.0705 0.6357 1.5245 33 1 8.1535 -0.6718 -0.1852 34 1 6.4012 -4.4143 -4.0166 35 1 7.7786 -3.7060 -3.1397 36 1 9.3164 -6.2705 -5.2889 37 1 4.4295 -5.0777 -2.7431 38 1 4.4561 -3.7749 -0.0020 39 1 2.9433 -4.3679 -0.7287 40 1 4.2816 -5.4981 -0.4123 41 1 3.8466 -3.0986 -3.7999 42 1 2.8619 -2.9383 -2.3259 43 1 4.4196 -2.0865 -2.4526 44 1 3.8273 -2.9607 -1.0184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534362585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:17 Heat of formation + Delta-G solvation = 13.551044 kcal Electronic energy + Delta-G solvation = -28200.092395 eV Core-core repulsion = 24315.189808 eV Total energy + Delta-G solvation = -3884.902587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.50680 -40.01306 -38.24021 -37.33189 -35.88724 -34.37218 -33.46285 -31.75418 -30.79434 -30.34906 -28.00742 -27.32210 -26.95224 -24.03105 -23.12467 -22.44597 -21.75574 -20.70233 -18.58296 -18.29624 -17.72450 -17.02372 -16.42961 -15.99822 -15.89275 -15.60641 -15.41070 -14.85656 -14.69959 -14.44670 -14.13783 -13.90977 -13.54454 -13.37154 -13.13585 -12.85846 -12.77305 -12.63082 -12.40352 -12.19397 -11.79910 -11.73596 -11.49609 -11.19915 -11.14562 -10.81861 -10.63025 -10.57542 -10.44676 -10.15844 -10.08176 -9.73761 -9.58859 -8.97016 -8.60529 -8.40927 -7.96996 -7.55349 -6.01293 -4.04794 0.99832 1.20437 2.29096 2.79246 3.23701 3.32262 3.40299 3.45518 3.81729 3.87861 4.36886 4.40546 4.48239 4.67359 4.81429 4.84487 4.94976 4.97540 5.12968 5.19958 5.30022 5.33043 5.34974 5.46198 5.58955 5.63489 5.74258 5.78977 5.95859 6.00820 6.11421 6.17599 6.27472 6.36842 6.41274 6.53502 6.80781 7.07609 7.13435 7.33936 7.63492 7.81697 7.90777 7.96258 8.25492 8.41301 8.89760 9.04286 9.60123 11.06254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.003786 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.479499 B = 7393.235131 C = 8272.894106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.669 5.669 5 C 0.103 3.897 6 C -0.087 4.087 7 C -0.150 4.150 8 C 0.150 3.850 9 O -0.478 6.478 10 C -0.152 4.152 11 C 0.559 3.441 12 O -0.489 6.489 13 N -0.614 5.614 14 C 0.256 3.744 15 C -0.517 4.517 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.283 1.283 23 C 0.137 3.863 24 C -0.211 4.211 25 C -0.183 4.183 26 C -0.146 4.146 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.410 0.590 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.390 0.610 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.613 10.335 7.841 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.403 6.403 4 N -0.315 5.315 5 C 0.010 3.990 6 C -0.107 4.107 7 C -0.169 4.169 8 C 0.103 3.897 9 O -0.288 6.288 10 C -0.156 4.156 11 C 0.346 3.654 12 O -0.362 6.362 13 N -0.348 5.348 14 C 0.137 3.863 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.032 3.968 24 C -0.267 4.267 25 C -0.241 4.241 26 C -0.165 4.165 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.247 0.753 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -17.601 10.591 8.427 22.203 hybrid contribution 0.229 -1.067 -0.366 1.151 sum -17.372 9.524 8.061 21.388 Atomic orbital electron populations 1.21937 0.90806 1.05960 1.04629 1.20985 0.90845 0.83161 0.75332 1.90737 1.70542 1.31294 1.47774 1.43543 1.05323 1.09813 1.72787 1.17621 0.82769 0.97884 1.00738 1.21150 0.94173 0.98337 0.97022 1.21215 0.93620 0.98996 1.03065 1.18527 0.84086 0.92612 0.94468 1.84812 1.14194 1.78125 1.51664 1.20725 0.93623 0.99232 1.02068 1.17823 0.85921 0.81401 0.80292 1.90800 1.22427 1.64967 1.58038 1.47946 1.06618 1.56734 1.23529 1.19241 0.88010 0.95140 0.83925 1.21533 1.26810 1.00556 1.06713 0.92163 1.24947 0.96112 0.98281 0.94976 1.69937 1.34094 1.37956 1.11912 0.86453 0.78769 0.84067 0.78206 1.19788 1.21120 1.20957 1.21035 0.81778 0.97871 0.96154 1.23414 1.00602 1.04334 0.98357 1.22904 0.99449 0.99872 1.01828 1.23969 0.93886 1.00431 0.98173 0.89016 0.88620 0.89019 0.75443 0.84334 0.84874 0.75273 0.94769 0.94986 0.92885 0.88303 0.88742 0.91351 0.91526 0.91970 0.92316 0.90822 0.77339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 36.01 0.37 -0.40 16 2 C 0.51 4.66 7.69 -10.98 -0.08 4.58 16 3 O -0.53 -7.14 14.56 5.55 0.08 -7.06 16 4 N -0.67 -5.77 5.35 -9.87 -0.05 -5.82 16 5 C 0.10 1.27 6.34 -83.68 -0.53 0.74 16 6 C -0.09 -1.15 8.66 -39.35 -0.34 -1.49 16 7 C -0.15 -2.06 9.97 -39.50 -0.39 -2.46 16 8 C 0.15 2.45 6.69 -38.71 -0.26 2.19 16 9 O -0.48 -8.09 11.86 -39.17 -0.46 -8.55 16 10 C -0.15 -2.61 4.98 -104.87 -0.52 -3.13 16 11 C 0.56 12.02 6.11 -12.47 -0.08 11.94 16 12 O -0.49 -12.67 15.78 -15.00 -0.24 -12.90 16 13 N -0.61 -12.84 2.36 -168.70 -0.40 -13.24 16 14 C 0.26 6.54 5.07 -5.19 -0.03 6.51 16 15 C -0.52 -14.65 9.28 -34.44 -0.32 -14.97 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.14 2.15 3.18 -67.94 -0.22 1.94 16 24 C -0.21 -2.77 7.74 37.15 0.29 -2.48 16 25 C -0.18 -2.32 8.12 37.16 0.30 -2.02 16 26 C -0.15 -1.98 4.04 -38.99 -0.16 -2.14 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.41 2.13 8.81 -40.82 -0.36 1.77 16 31 H 0.14 1.80 6.15 -52.49 -0.32 1.48 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.39 5.05 9.06 45.56 0.41 5.46 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 35 H 0.03 0.91 8.01 -51.93 -0.42 0.49 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.10 1.60 8.03 -51.93 -0.42 1.19 16 38 H 0.09 1.37 3.31 -83.07 -0.27 1.10 16 39 H 0.07 0.59 7.44 -51.93 -0.39 0.21 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 43 H 0.07 1.06 5.50 -51.93 -0.29 0.77 16 44 H 0.21 2.53 0.54 -131.17 -0.07 2.46 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -37.32 354.47 -7.06 -44.38 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.98 Total: 6.18 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.06 Total: 0.37 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.28 Total: -44.86 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.62 Total: -28.52 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.32 -7.06 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534362585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.929 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds