Wall clock time and date at job start Tue Mar 31 2020 12:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47067 * 2 1 4 4 H 1.09008 * 109.47018 * 180.35951 * 3 2 1 5 5 C 1.50703 * 109.47189 * 60.36155 * 3 2 1 6 6 H 1.07994 * 119.99769 * 239.99848 * 5 3 2 7 7 C 1.37874 * 119.99897 * 59.99762 * 5 3 2 8 8 N 1.31519 * 119.99979 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00297 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47389 * 270.00061 * 9 7 5 11 11 H 1.48498 * 109.46952 * 29.99911 * 9 7 5 12 12 H 1.48508 * 109.47283 * 149.99771 * 9 7 5 13 13 N 1.46898 * 109.47465 * 300.35808 * 3 2 1 14 14 C 1.46895 * 111.00258 * 273.79785 * 13 3 2 15 15 C 1.50700 * 109.47274 * 174.43350 * 14 13 3 16 16 O 1.21274 * 119.99712 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00184 * 180.02562 * 15 14 13 18 18 C 1.39411 * 120.00384 * 184.57000 * 17 15 14 19 19 C 1.39149 * 119.91857 * 323.90792 * 18 17 15 20 20 C 1.37651 * 120.07922 * 179.72181 * 19 18 17 21 21 C 1.39808 * 119.91644 * 0.54331 * 20 19 18 22 22 C 1.47460 * 120.07669 * 179.70730 * 21 20 19 23 23 O 1.21509 * 120.00125 * 180.02562 * 22 21 20 24 24 O 1.34749 * 119.99973 * 0.02562 * 22 21 20 25 25 C 1.45197 * 116.99893 * 180.02562 * 24 22 21 26 26 C 1.39814 * 119.84599 * 359.72411 * 21 20 19 27 27 C 1.37645 * 119.91604 * 0.02562 * 26 21 20 28 28 H 1.08994 * 109.47167 * 63.22946 * 1 2 3 29 29 H 1.09000 * 109.47055 * 183.23134 * 1 2 3 30 30 H 1.09003 * 109.46940 * 303.22589 * 1 2 3 31 31 H 1.09005 * 109.47208 * 240.00024 * 2 1 3 32 32 H 1.09006 * 109.47029 * 120.00342 * 2 1 3 33 33 H 0.97000 * 119.99710 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00411 * 149.83988 * 13 3 2 35 35 H 1.08995 * 109.47286 * 294.43825 * 14 13 3 36 36 H 1.09011 * 109.46976 * 54.43326 * 14 13 3 37 37 H 0.97008 * 119.99909 * 4.56608 * 17 15 14 38 38 H 1.08003 * 119.96110 * 359.97098 * 19 18 17 39 39 H 1.07992 * 120.04151 * 180.24283 * 20 19 18 40 40 H 1.09010 * 109.47461 * 300.00398 * 25 24 22 41 41 H 1.08998 * 109.47109 * 60.00406 * 25 24 22 42 42 H 1.09004 * 109.47305 * 180.02562 * 25 24 22 43 43 H 1.07999 * 120.03847 * 179.97438 * 26 21 20 44 44 H 1.07998 * 119.95732 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 -0.0064 5 6 1.5450 2.1503 1.2349 6 1 0.9236 3.0286 1.1413 7 6 1.8855 1.6766 2.4842 8 7 1.4539 2.2946 3.5619 9 14 2.9610 0.1579 2.6460 10 1 2.1032 -1.0534 2.6937 11 1 3.8747 0.0717 1.4786 12 1 3.7602 0.2480 3.8945 13 7 1.5433 2.1375 -1.1950 14 6 2.4356 1.9174 -2.3410 15 6 1.8263 2.5283 -3.5766 16 8 0.7542 3.0911 -3.5092 17 7 2.4724 2.4483 -4.7567 18 6 1.9565 3.0944 -5.8792 19 6 0.5798 3.1613 -6.0699 20 6 0.0667 3.8034 -7.1741 21 6 0.9309 4.3790 -8.1103 22 6 0.3852 5.0621 -9.2977 23 8 1.1376 5.5614 -10.1107 24 8 -0.9479 5.1327 -9.4812 25 6 -1.4139 5.8196 -10.6724 26 6 2.3138 4.3050 -7.9182 27 6 2.8196 3.6657 -6.8091 28 1 -0.3633 0.4629 -0.9175 29 1 -0.3633 -1.0260 0.0579 30 1 -0.3633 0.5631 0.8597 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6932 1.9611 4.4408 34 1 1.4214 3.1230 -1.0158 35 1 3.4014 2.3826 -2.1442 36 1 2.5724 0.8469 -2.4946 37 1 3.2965 1.9410 -4.8251 38 1 -0.0871 2.7123 -5.3487 39 1 -1.0020 3.8584 -7.3195 40 1 -1.0654 6.8524 -10.6561 41 1 -1.0226 5.3181 -11.5575 42 1 -2.5035 5.8046 -10.6978 43 1 2.9843 4.7481 -8.6397 44 1 3.8877 3.6078 -6.6603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576527017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:45 Heat of formation + Delta-G solvation = -80.857655 kcal Electronic energy + Delta-G solvation = -25861.140323 eV Core-core repulsion = 21972.143868 eV Total energy + Delta-G solvation = -3888.996455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.97121 -40.36301 -38.51759 -36.71586 -36.43983 -34.92617 -32.69916 -31.45174 -31.36815 -30.53743 -28.14426 -27.45876 -25.47874 -23.70356 -23.16787 -23.13979 -21.35903 -20.42359 -19.42825 -18.31347 -18.09797 -17.21561 -17.15084 -16.62183 -16.38815 -15.95803 -15.33454 -14.91860 -14.57389 -14.45292 -13.95355 -13.86560 -13.75200 -13.66055 -13.56890 -13.18637 -12.89451 -12.82211 -12.71042 -12.40123 -12.20689 -11.85773 -11.56226 -11.13959 -11.11847 -10.85384 -10.75189 -10.62784 -10.56393 -10.31355 -10.10087 -9.72836 -9.38950 -9.27150 -9.04032 -8.63359 -8.48115 -7.63126 -6.14704 -4.14488 0.37906 1.11493 2.17692 2.40676 2.64033 2.83127 3.22176 3.29263 3.33153 3.54002 4.32560 4.45794 4.51040 4.66111 4.73895 4.77954 4.85436 4.99609 4.99682 5.13624 5.18812 5.19341 5.27902 5.49690 5.57325 5.70353 5.81833 6.00640 6.03727 6.06427 6.06985 6.14912 6.20782 6.39924 6.60206 6.67507 6.82882 7.05029 7.13261 7.16563 7.45214 7.45875 7.52873 7.76837 8.06368 8.21973 8.52065 8.90488 9.46260 10.97978 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.002133 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.152456 B =13122.570145 C =13409.670073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.003 0.997 5 C -0.516 4.516 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.297 1.297 13 N -0.659 5.659 14 C 0.042 3.958 15 C 0.513 3.487 16 O -0.492 6.492 17 N -0.683 5.683 18 C 0.196 3.804 19 C -0.138 4.138 20 C -0.038 4.038 21 C -0.157 4.157 22 C 0.513 3.487 23 O -0.513 6.513 24 O -0.355 6.355 25 C 0.037 3.963 26 C -0.033 4.033 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.350 0.650 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 0.902 -25.189 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.020 0.980 5 C -0.554 4.554 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.225 1.225 13 N -0.292 5.292 14 C -0.091 4.091 15 C 0.301 3.699 16 O -0.363 6.363 17 N -0.329 5.329 18 C 0.099 3.901 19 C -0.158 4.158 20 C -0.057 4.057 21 C -0.159 4.159 22 C 0.359 3.641 23 O -0.403 6.403 24 O -0.272 6.272 25 C -0.057 4.057 26 C -0.051 4.051 27 C -0.185 4.185 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.249 0.751 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.157 0.843 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.325 0.962 -25.242 25.263 hybrid contribution 1.804 -0.476 0.249 1.883 sum 2.130 0.486 -24.993 25.088 Atomic orbital electron populations 1.21480 0.95356 0.98322 1.03224 1.21770 0.97641 0.97933 0.97781 1.19618 0.92941 0.91414 0.88191 0.97983 1.20982 1.32708 1.13428 0.88256 0.90148 1.24898 0.95503 0.96764 0.95730 1.69886 1.45150 1.40317 0.97906 0.86858 0.80771 0.83785 0.76805 1.20327 1.19472 1.22509 1.60224 1.46851 1.17974 1.04132 1.21834 0.95535 1.01461 0.90303 1.21333 0.85253 0.79241 0.84053 1.90713 1.20092 1.40489 1.85052 1.43731 1.28747 1.52427 1.08038 1.18098 0.92915 0.92305 0.86738 1.21377 0.94238 1.01850 0.98365 1.21371 1.00264 0.92632 0.91474 1.19026 0.94108 1.07098 0.95658 1.21173 0.80605 0.76885 0.85411 1.90828 1.59437 1.44967 1.45056 1.86564 1.24338 1.71115 1.45135 1.23284 1.00352 0.96889 0.85151 1.20981 0.93314 0.94668 0.96174 1.20864 0.99911 1.01705 0.95996 0.92504 0.96076 0.91299 0.95184 0.93938 0.92514 0.83017 0.92558 0.88377 0.75070 0.83190 0.84145 0.91810 0.91850 0.87910 0.84278 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.52 37.16 0.35 -2.26 16 2 C -0.11 -2.37 5.29 -26.73 -0.14 -2.52 16 3 C 0.19 4.11 1.89 -68.87 -0.13 3.98 16 4 H 0.00 0.06 6.90 -51.92 -0.36 -0.30 16 5 C -0.52 -13.68 7.87 -34.44 -0.27 -13.95 16 6 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 9 Si 0.89 21.15 24.38 -169.99 -4.14 17.00 16 10 H -0.28 -6.49 6.86 56.52 0.39 -6.10 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 H -0.30 -7.15 7.11 56.52 0.40 -6.74 16 13 N -0.66 -12.61 5.12 -109.22 -0.56 -13.17 16 14 C 0.04 0.59 5.94 -4.98 -0.03 0.56 16 15 C 0.51 7.02 7.71 -10.99 -0.08 6.94 16 16 O -0.49 -8.55 13.80 5.56 0.08 -8.47 16 17 N -0.68 -6.80 5.31 -9.86 -0.05 -6.85 16 18 C 0.20 2.10 6.28 -83.74 -0.53 1.57 16 19 C -0.14 -1.63 8.66 -39.46 -0.34 -1.97 16 20 C -0.04 -0.41 9.60 -39.21 -0.38 -0.78 16 21 C -0.16 -1.69 5.88 -104.96 -0.62 -2.31 16 22 C 0.51 5.86 7.89 34.49 0.27 6.13 16 23 O -0.51 -6.82 16.13 -19.27 -0.31 -7.14 16 24 O -0.36 -3.51 9.81 -40.63 -0.40 -3.91 16 25 C 0.04 0.25 10.56 101.05 1.07 1.32 16 26 C -0.03 -0.31 9.58 -39.21 -0.38 -0.69 16 27 C -0.16 -1.46 9.94 -39.46 -0.39 -1.85 16 28 H 0.06 1.15 7.70 -51.93 -0.40 0.75 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.61 7.12 -51.93 -0.37 1.24 16 31 H 0.03 0.55 7.47 -51.93 -0.39 0.16 16 32 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.35 7.10 8.10 -39.29 -0.32 6.79 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.25 7.42 -51.92 -0.39 0.86 16 37 H 0.41 2.65 8.82 -40.82 -0.36 2.29 16 38 H 0.15 2.00 6.28 -52.48 -0.33 1.67 16 39 H 0.14 1.29 7.60 -52.49 -0.40 0.89 16 40 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.14 1.20 7.64 -52.49 -0.40 0.80 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -32.83 364.28 -6.82 -39.65 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.01 Total: 7.01 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.69 Total: -3.90 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.16 Total: -45.73 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.63 Total: -19.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.14 Total: 17.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.83 -6.82 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576527017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.208 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds