Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47067 * 2 1 4 4 H 1.09008 * 109.47018 * 180.35951 * 3 2 1 5 5 C 1.50703 * 109.47189 * 60.36155 * 3 2 1 6 6 H 1.07994 * 119.99769 * 239.99848 * 5 3 2 7 7 C 1.37874 * 119.99897 * 59.99762 * 5 3 2 8 8 N 1.31519 * 119.99979 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00297 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47389 * 270.00061 * 9 7 5 11 11 H 1.48498 * 109.46952 * 29.99911 * 9 7 5 12 12 H 1.48508 * 109.47283 * 149.99771 * 9 7 5 13 13 N 1.46898 * 109.47465 * 300.35808 * 3 2 1 14 14 C 1.46895 * 111.00258 * 273.79785 * 13 3 2 15 15 C 1.50700 * 109.47274 * 174.43350 * 14 13 3 16 16 O 1.21274 * 119.99712 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00184 * 180.02562 * 15 14 13 18 18 C 1.39411 * 120.00384 * 184.57000 * 17 15 14 19 19 C 1.39149 * 119.91857 * 323.90792 * 18 17 15 20 20 C 1.37651 * 120.07922 * 179.72181 * 19 18 17 21 21 C 1.39808 * 119.91644 * 0.54331 * 20 19 18 22 22 C 1.47460 * 120.07669 * 179.70730 * 21 20 19 23 23 O 1.21509 * 120.00125 * 180.02562 * 22 21 20 24 24 O 1.34749 * 119.99973 * 0.02562 * 22 21 20 25 25 C 1.45197 * 116.99893 * 180.02562 * 24 22 21 26 26 C 1.39814 * 119.84599 * 359.72411 * 21 20 19 27 27 C 1.37645 * 119.91604 * 0.02562 * 26 21 20 28 28 H 1.08994 * 109.47167 * 63.22946 * 1 2 3 29 29 H 1.09000 * 109.47055 * 183.23134 * 1 2 3 30 30 H 1.09003 * 109.46940 * 303.22589 * 1 2 3 31 31 H 1.09005 * 109.47208 * 240.00024 * 2 1 3 32 32 H 1.09006 * 109.47029 * 120.00342 * 2 1 3 33 33 H 0.97000 * 119.99710 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00411 * 149.83988 * 13 3 2 35 35 H 1.08995 * 109.47286 * 294.43825 * 14 13 3 36 36 H 1.09011 * 109.46976 * 54.43326 * 14 13 3 37 37 H 0.97008 * 119.99909 * 4.56608 * 17 15 14 38 38 H 1.08003 * 119.96110 * 359.97098 * 19 18 17 39 39 H 1.07992 * 120.04151 * 180.24283 * 20 19 18 40 40 H 1.09010 * 109.47461 * 300.00398 * 25 24 22 41 41 H 1.08998 * 109.47109 * 60.00406 * 25 24 22 42 42 H 1.09004 * 109.47305 * 180.02562 * 25 24 22 43 43 H 1.07999 * 120.03847 * 179.97438 * 26 21 20 44 44 H 1.07998 * 119.95732 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1301 1.4425 -0.0064 5 6 1.5450 2.1503 1.2349 6 1 0.9236 3.0286 1.1413 7 6 1.8855 1.6766 2.4842 8 7 1.4539 2.2946 3.5619 9 14 2.9610 0.1579 2.6460 10 1 2.1032 -1.0534 2.6937 11 1 3.8747 0.0717 1.4786 12 1 3.7602 0.2480 3.8945 13 7 1.5433 2.1375 -1.1950 14 6 2.4356 1.9174 -2.3410 15 6 1.8263 2.5283 -3.5766 16 8 0.7542 3.0911 -3.5092 17 7 2.4724 2.4483 -4.7567 18 6 1.9565 3.0944 -5.8792 19 6 0.5798 3.1613 -6.0699 20 6 0.0667 3.8034 -7.1741 21 6 0.9309 4.3790 -8.1103 22 6 0.3852 5.0621 -9.2977 23 8 1.1376 5.5614 -10.1107 24 8 -0.9479 5.1327 -9.4812 25 6 -1.4139 5.8196 -10.6724 26 6 2.3138 4.3050 -7.9182 27 6 2.8196 3.6657 -6.8091 28 1 -0.3633 0.4629 -0.9175 29 1 -0.3633 -1.0260 0.0579 30 1 -0.3633 0.5631 0.8597 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6932 1.9611 4.4408 34 1 1.4214 3.1230 -1.0158 35 1 3.4014 2.3826 -2.1442 36 1 2.5724 0.8469 -2.4946 37 1 3.2965 1.9410 -4.8251 38 1 -0.0871 2.7123 -5.3487 39 1 -1.0020 3.8584 -7.3195 40 1 -1.0654 6.8524 -10.6561 41 1 -1.0226 5.3181 -11.5575 42 1 -2.5035 5.8046 -10.6978 43 1 2.9843 4.7481 -8.6397 44 1 3.8877 3.6078 -6.6603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576527017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -104.108229 kcal Electronic energy + Delta-G solvation = -25862.148543 eV Core-core repulsion = 21972.143868 eV Total energy + Delta-G solvation = -3890.004676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84277 -41.28578 -39.46078 -38.06742 -37.50299 -35.89224 -34.49849 -33.12838 -32.15108 -31.48550 -29.36228 -28.50625 -26.88628 -24.98457 -24.61247 -23.95482 -22.25751 -21.42704 -21.06866 -19.16061 -19.08122 -18.53448 -18.08712 -17.85015 -17.40794 -17.35087 -16.58750 -15.78281 -15.72406 -15.60703 -15.28916 -15.14821 -14.86319 -14.73879 -14.57360 -14.48162 -14.42320 -13.81328 -13.65802 -13.63906 -13.20560 -13.00625 -12.86869 -12.54940 -12.44285 -12.36093 -12.06270 -11.85172 -11.83566 -11.72654 -11.46055 -11.21257 -10.95428 -10.84364 -10.65080 -10.06903 -9.33939 -9.10567 -8.26155 -6.29785 -0.46192 0.33627 1.27032 1.35494 1.37779 1.48682 1.65608 1.68950 1.92159 2.34641 2.73327 3.09538 3.51551 3.67517 3.71671 3.87452 3.92516 4.22871 4.29073 4.31037 4.32952 4.35217 4.45600 4.47991 4.49862 4.55224 4.69324 4.74710 4.93895 4.95567 5.03571 5.17046 5.20793 5.24513 5.26777 5.36469 5.38576 5.41065 5.65664 5.79283 5.83858 5.96901 6.35099 6.47083 6.63070 6.66860 6.82295 7.12622 7.35178 8.90475 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.002133 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.152456 B =13122.570145 C =13409.670073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C 0.193 3.807 4 H 0.011 0.989 5 C -0.512 4.512 6 H 0.034 0.966 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.239 1.239 12 H -0.303 1.303 13 N -0.671 5.671 14 C 0.041 3.959 15 C 0.518 3.482 16 O -0.537 6.537 17 N -0.662 5.662 18 C 0.184 3.816 19 C -0.154 4.154 20 C -0.039 4.039 21 C -0.167 4.167 22 C 0.514 3.486 23 O -0.537 6.537 24 O -0.361 6.361 25 C 0.029 3.971 26 C -0.034 4.034 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.338 0.662 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.433 0.567 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.132 0.868 43 H 0.151 0.849 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -0.929 -27.506 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C 0.084 3.916 4 H 0.028 0.972 5 C -0.550 4.550 6 H 0.052 0.948 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.162 1.162 12 H -0.231 1.231 13 N -0.302 5.302 14 C -0.091 4.091 15 C 0.307 3.693 16 O -0.412 6.412 17 N -0.309 5.309 18 C 0.088 3.912 19 C -0.174 4.174 20 C -0.058 4.058 21 C -0.169 4.169 22 C 0.361 3.639 23 O -0.429 6.429 24 O -0.277 6.277 25 C -0.064 4.064 26 C -0.053 4.053 27 C -0.168 4.168 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.273 0.727 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.463 -0.895 -27.625 27.749 hybrid contribution 1.052 0.210 0.846 1.366 sum 3.515 -0.684 -26.780 27.018 Atomic orbital electron populations 1.21377 0.95712 0.99176 1.01434 1.21766 0.97363 0.97016 0.99151 1.19447 0.93012 0.91948 0.87231 0.97178 1.21250 1.31077 1.12079 0.90607 0.94811 1.25784 0.97196 1.00165 0.95289 1.70056 1.47603 1.42706 0.98572 0.85848 0.79319 0.79725 0.77488 1.19513 1.16227 1.23141 1.60108 1.48652 1.16947 1.04514 1.21949 0.95372 1.03300 0.88499 1.21208 0.84654 0.78601 0.84866 1.90718 1.22093 1.42639 1.85752 1.43403 1.28924 1.51896 1.06693 1.18226 0.92785 0.92958 0.87257 1.21305 0.94896 1.02757 0.98477 1.21398 1.00773 0.92430 0.91177 1.19174 0.94845 1.07300 0.95565 1.21304 0.80965 0.76412 0.85230 1.90809 1.60012 1.46164 1.45904 1.86558 1.23513 1.71222 1.46419 1.23590 1.02112 0.96563 0.84140 1.21217 0.93004 0.94425 0.96615 1.21122 1.01258 0.99890 0.94559 0.92412 0.93600 0.95212 0.91259 0.94808 0.92663 0.84401 0.90210 0.85883 0.72689 0.85180 0.83475 0.91864 0.91567 0.85004 0.83108 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.52 71.98 0.69 -4.10 16 2 C -0.12 -4.47 5.29 30.59 0.16 -4.31 16 3 C 0.19 8.17 1.89 44.17 0.08 8.25 16 4 H 0.01 0.44 6.90 -2.38 -0.02 0.42 16 5 C -0.51 -27.80 7.87 25.60 0.20 -27.60 16 6 H 0.03 2.09 7.84 -2.91 -0.02 2.07 16 7 C 0.01 0.73 5.45 84.65 0.46 1.19 16 8 N -0.95 -58.33 13.96 21.45 0.30 -58.03 16 9 Si 0.95 42.83 24.38 68.60 1.67 44.50 16 10 H -0.27 -11.73 6.86 99.48 0.68 -11.05 16 11 H -0.24 -9.52 6.53 99.48 0.65 -8.87 16 12 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 13 N -0.67 -24.97 5.12 -499.46 -2.55 -27.52 16 14 C 0.04 1.04 5.94 85.56 0.51 1.55 16 15 C 0.52 13.20 7.71 87.66 0.68 13.87 16 16 O -0.54 -18.62 13.80 -3.01 -0.04 -18.66 16 17 N -0.66 -11.26 5.31 -303.50 -1.61 -12.88 16 18 C 0.18 3.55 6.28 38.37 0.24 3.79 16 19 C -0.15 -3.56 8.66 22.35 0.19 -3.36 16 20 C -0.04 -0.81 9.60 22.51 0.22 -0.59 16 21 C -0.17 -3.43 5.88 -20.09 -0.12 -3.55 16 22 C 0.51 11.38 7.89 70.25 0.55 11.94 16 23 O -0.54 -13.92 16.13 19.81 0.32 -13.60 16 24 O -0.36 -6.88 9.81 -56.60 -0.55 -7.43 16 25 C 0.03 0.35 10.56 113.37 1.20 1.55 16 26 C -0.03 -0.58 9.58 22.51 0.22 -0.37 16 27 C -0.15 -2.18 9.94 22.35 0.22 -1.96 16 28 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.39 7.12 -2.39 -0.02 1.37 16 31 H 0.07 2.18 7.47 -2.38 -0.02 2.16 16 32 H 0.03 1.38 3.27 -2.38 -0.01 1.38 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.34 13.96 8.10 -89.69 -0.73 13.24 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.12 2.53 7.42 -2.38 -0.02 2.51 16 37 H 0.43 3.75 8.82 -92.70 -0.82 2.93 16 38 H 0.13 3.56 6.28 -2.91 -0.02 3.54 16 39 H 0.15 2.71 7.60 -2.91 -0.02 2.69 16 40 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.15 2.26 7.64 -2.91 -0.02 2.23 16 44 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -74.67 364.28 2.45 -72.22 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.58 Total: 25.10 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.50 Total: -3.71 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -3.87 Total: -98.43 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.28 Total: -39.69 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.67 Total: 44.50 kcal Total: -74.67 2.45 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576527017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.890 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds