Wall clock time and date at job start Tue Mar 31 2020 12:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47432 * 2 1 4 4 H 1.09002 * 109.46861 * 55.90291 * 3 2 1 5 5 C 1.50701 * 109.47347 * 175.90514 * 3 2 1 6 6 H 1.07999 * 119.99819 * 119.99916 * 5 3 2 7 7 C 1.37877 * 119.99762 * 299.99912 * 5 3 2 8 8 N 1.31505 * 120.00312 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99647 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47281 * 60.00098 * 9 7 5 11 11 H 1.48494 * 109.46792 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46808 * 299.99802 * 9 7 5 13 13 N 1.46900 * 109.46989 * 295.90740 * 3 2 1 14 14 C 1.46904 * 111.00236 * 153.63240 * 13 3 2 15 15 C 1.50701 * 109.47067 * 185.35073 * 14 13 3 16 16 O 1.21271 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99547 * 179.97438 * 15 14 13 18 18 C 1.39416 * 119.99953 * 175.05238 * 17 15 14 19 19 C 1.39142 * 119.92085 * 326.00064 * 18 17 15 20 20 C 1.37650 * 120.07751 * 179.71874 * 19 18 17 21 21 C 1.39802 * 119.92061 * 0.54543 * 20 19 18 22 22 C 1.47466 * 120.08142 * 179.70148 * 21 20 19 23 23 O 1.21505 * 120.00001 * 180.02562 * 22 21 20 24 24 O 1.34751 * 119.99379 * 0.02562 * 22 21 20 25 25 C 1.45207 * 116.99368 * 179.97438 * 24 22 21 26 26 C 1.39813 * 119.84495 * 359.71943 * 21 20 19 27 27 C 1.37645 * 119.91761 * 0.02562 * 26 21 20 28 28 H 1.08999 * 109.46848 * 305.07483 * 1 2 3 29 29 H 1.09001 * 109.46867 * 65.07539 * 1 2 3 30 30 H 1.08993 * 109.47243 * 185.07446 * 1 2 3 31 31 H 1.09000 * 109.47275 * 239.99784 * 2 1 3 32 32 H 1.08999 * 109.47412 * 119.99834 * 2 1 3 33 33 H 0.96998 * 120.00686 * 180.02562 * 8 7 5 34 34 H 1.00899 * 110.99923 * 277.58458 * 13 3 2 35 35 H 1.09003 * 109.46656 * 305.34874 * 14 13 3 36 36 H 1.09000 * 109.47065 * 65.34694 * 14 13 3 37 37 H 0.97000 * 120.00398 * 355.05474 * 17 15 14 38 38 H 1.08004 * 119.96194 * 359.96489 * 19 18 17 39 39 H 1.08004 * 120.04021 * 180.23875 * 20 19 18 40 40 H 1.08996 * 109.47226 * 299.99467 * 25 24 22 41 41 H 1.08998 * 109.47192 * 60.00211 * 25 24 22 42 42 H 1.09003 * 109.46424 * 179.97438 * 25 24 22 43 43 H 1.07995 * 120.04161 * 179.97438 * 26 21 20 44 44 H 1.08000 * 119.96206 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6180 1.9771 0.8510 5 6 3.5436 1.4437 0.1015 6 1 4.1373 1.8923 -0.6813 7 6 4.1613 0.8720 1.1936 8 7 3.4384 0.3252 2.1464 9 14 6.0251 0.8741 1.3196 10 1 6.5196 2.2743 1.3200 11 1 6.4367 0.2029 2.5786 12 1 6.6004 0.1461 0.1602 13 7 1.6328 2.1058 -1.2458 14 6 1.5252 3.5588 -1.0578 15 6 0.9808 4.1889 -2.3139 16 8 0.7097 3.4960 -3.2715 17 7 0.7953 5.5225 -2.3729 18 6 0.3902 6.1178 -3.5667 19 6 0.8249 5.6001 -4.7829 20 6 0.4222 6.1818 -5.9637 21 6 -0.4153 7.3009 -5.9397 22 6 -0.8435 7.9309 -7.2024 23 8 -1.5710 8.9038 -7.1798 24 8 -0.4279 7.4274 -8.3812 25 6 -0.8892 8.0981 -9.5836 26 6 -0.8457 7.8218 -4.7156 27 6 -0.4433 7.2318 -3.5389 28 1 -0.3633 0.5905 0.8410 29 1 -0.3633 0.4331 -0.9320 30 1 -0.3633 -1.0236 0.0909 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8729 -0.0767 2.9149 34 1 2.2682 1.8846 -1.9977 35 1 0.8534 3.7686 -0.2254 36 1 2.5108 3.9712 -0.8421 37 1 0.9437 6.0682 -1.5848 38 1 1.4758 4.7384 -4.8006 39 1 0.7569 5.7771 -6.9074 40 1 -1.9782 8.0694 -9.6206 41 1 -0.5531 9.1349 -9.5731 42 1 -0.4822 7.5934 -10.4599 43 1 -1.4923 8.6864 -4.6934 44 1 -0.7749 7.6338 -2.5930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576527018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:50 Heat of formation + Delta-G solvation = -113.144351 kcal Electronic energy + Delta-G solvation = -25763.426251 eV Core-core repulsion = 21873.029739 eV Total energy + Delta-G solvation = -3890.396511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83744 -41.27402 -39.43001 -37.78840 -37.48369 -35.88273 -34.38092 -32.97256 -32.15830 -31.46569 -29.18593 -28.43854 -26.84886 -24.90508 -24.09771 -23.97753 -22.15503 -21.49575 -21.23916 -19.11607 -18.99907 -18.68762 -18.08073 -17.84012 -17.38959 -16.79967 -16.61524 -15.99917 -15.69976 -15.53968 -15.36106 -14.94043 -14.77015 -14.52016 -14.49225 -14.27645 -13.83637 -13.74986 -13.65130 -13.39170 -13.05997 -13.03146 -12.99709 -12.75114 -12.48854 -12.35189 -12.07458 -11.82863 -11.73269 -11.58523 -11.49423 -11.47765 -11.06964 -10.80495 -10.44133 -10.07604 -9.31284 -9.07109 -8.04207 -6.26075 -0.45773 0.33377 1.25781 1.41573 1.44135 1.50175 1.68691 1.69316 1.92794 2.42230 2.74157 3.16528 3.63751 3.67894 3.79397 3.88139 3.93810 4.22659 4.29821 4.33710 4.35080 4.44597 4.49328 4.65312 4.65662 4.69877 4.78059 4.94061 4.95375 5.01791 5.17988 5.19607 5.24074 5.26549 5.38503 5.44008 5.51964 5.62812 5.76776 5.83056 6.07445 6.17265 6.27972 6.41319 6.63899 6.75449 6.97648 7.11403 7.45429 8.92331 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002178 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.954901 B =12851.265085 C =13148.634414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.014 0.986 5 C -0.561 4.561 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.674 5.674 14 C 0.052 3.948 15 C 0.521 3.479 16 O -0.535 6.535 17 N -0.664 5.664 18 C 0.187 3.813 19 C -0.156 4.156 20 C -0.035 4.035 21 C -0.168 4.168 22 C 0.515 3.485 23 O -0.537 6.537 24 O -0.361 6.361 25 C 0.029 3.971 26 C -0.031 4.031 27 C -0.152 4.152 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.262 0.738 34 H 0.333 0.667 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.431 0.569 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 16.597 -14.280 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.032 0.968 5 C -0.601 4.601 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.081 4.081 15 C 0.310 3.690 16 O -0.410 6.410 17 N -0.311 5.311 18 C 0.091 3.909 19 C -0.176 4.176 20 C -0.054 4.054 21 C -0.170 4.170 22 C 0.362 3.638 23 O -0.429 6.429 24 O -0.277 6.277 25 C -0.064 4.064 26 C -0.050 4.050 27 C -0.172 4.172 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.271 0.729 38 H 0.145 0.855 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.170 0.830 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.847 16.112 -14.645 23.144 hybrid contribution 2.002 0.276 0.549 2.094 sum -5.845 16.387 -14.096 22.393 Atomic orbital electron populations 1.21548 0.96560 0.99545 1.00534 1.21380 0.94258 0.98606 0.99988 1.18974 0.91671 0.91463 0.86236 0.96763 1.22111 0.93807 1.38306 1.05828 0.92994 1.25613 1.01896 0.94707 0.95490 1.69976 1.36499 1.38240 1.09913 0.85769 0.81277 0.78339 0.77151 1.19616 1.21155 1.20265 1.60534 1.55560 1.05703 1.08583 1.21713 1.01267 0.90812 0.94336 1.21197 0.76272 0.81464 0.90071 1.90690 1.48902 1.62390 1.39006 1.43486 1.67125 1.07767 1.12719 1.18254 0.93125 0.93243 0.86310 1.21170 1.02804 1.02100 0.91529 1.21372 0.92934 0.92180 0.98936 1.19155 1.06619 1.00535 0.90740 1.21269 0.76705 0.80924 0.84910 1.90808 1.36303 1.27339 1.88439 1.86559 1.68680 1.56899 1.15540 1.23590 1.00886 0.98506 0.83418 1.21210 0.95806 0.98230 0.89736 1.21106 0.98679 0.97231 1.00152 0.94453 0.93041 0.93948 0.95803 0.91707 0.92822 0.85036 0.87365 0.91265 0.72894 0.85496 0.83250 0.91812 0.91633 0.84984 0.83038 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.73 71.98 0.70 -4.30 16 2 C -0.10 -4.88 5.45 30.59 0.17 -4.71 16 3 C 0.22 10.54 1.99 44.17 0.09 10.63 16 4 H 0.01 0.73 7.69 -2.39 -0.02 0.71 16 5 C -0.56 -28.62 8.49 25.60 0.22 -28.40 16 6 H 0.05 2.61 7.72 -2.91 -0.02 2.58 16 7 C 0.02 1.23 5.30 84.66 0.45 1.68 16 8 N -0.91 -49.50 11.29 21.45 0.24 -49.26 16 9 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.67 -26.99 5.29 -499.44 -2.64 -29.64 16 14 C 0.05 1.62 6.00 85.56 0.51 2.13 16 15 C 0.52 15.06 7.61 87.66 0.67 15.73 16 16 O -0.54 -19.41 14.01 -3.00 -0.04 -19.45 16 17 N -0.66 -13.62 5.32 -303.50 -1.61 -15.23 16 18 C 0.19 4.01 6.27 38.37 0.24 4.25 16 19 C -0.16 -3.78 8.62 22.35 0.19 -3.58 16 20 C -0.04 -0.76 9.60 22.51 0.22 -0.54 16 21 C -0.17 -3.59 5.88 -20.09 -0.12 -3.71 16 22 C 0.51 11.62 7.89 70.25 0.55 12.17 16 23 O -0.54 -14.15 16.13 19.82 0.32 -13.83 16 24 O -0.36 -6.94 9.81 -56.61 -0.56 -7.50 16 25 C 0.03 0.36 10.57 113.37 1.20 1.56 16 26 C -0.03 -0.57 9.58 22.51 0.22 -0.36 16 27 C -0.15 -2.52 9.94 22.35 0.22 -2.29 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 2.02 7.87 -2.39 -0.02 2.01 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 3.41 5.97 -2.39 -0.01 3.40 16 33 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 34 H 0.33 13.92 8.28 -89.69 -0.74 13.18 16 35 H 0.11 3.11 7.92 -2.39 -0.02 3.10 16 36 H 0.07 2.13 8.13 -2.39 -0.02 2.11 16 37 H 0.43 5.66 8.81 -92.71 -0.82 4.84 16 38 H 0.13 3.55 6.44 -2.91 -0.02 3.53 16 39 H 0.15 2.78 7.60 -2.91 -0.02 2.76 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.15 2.42 7.64 -2.91 -0.02 2.39 16 44 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -66.05 374.90 2.73 -63.32 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.53 Total: 27.86 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.52 Total: 0.25 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -4.01 Total: -94.13 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.28 Total: -40.78 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -66.05 2.73 -63.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576527018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.828 kcal (2) G-P(sol) polarization free energy of solvation -66.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds