Wall clock time and date at job start Tue Mar 31 2020 12:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46970 * 55.00965 * 3 2 1 5 5 C 1.50698 * 109.47244 * 175.01408 * 3 2 1 6 6 H 1.08002 * 120.00337 * 119.99870 * 5 3 2 7 7 C 1.37885 * 119.99592 * 300.00001 * 5 3 2 8 8 N 1.31514 * 119.99916 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99603 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47278 * 120.00441 * 9 7 5 12 12 H 1.48504 * 109.47122 * 239.99713 * 9 7 5 13 13 N 1.46902 * 109.47146 * 295.01172 * 3 2 1 14 14 C 1.46899 * 110.99995 * 152.22519 * 13 3 2 15 15 C 1.50698 * 109.47463 * 184.30794 * 14 13 3 16 16 O 1.21304 * 119.99570 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00536 * 179.97438 * 15 14 13 18 18 C 1.40095 * 120.00558 * 184.94602 * 17 15 14 19 19 C 1.38850 * 120.01758 * 33.00370 * 18 17 15 20 20 C 1.38129 * 120.03716 * 179.75319 * 19 18 17 21 21 C 1.38709 * 120.16309 * 0.25052 * 20 19 18 22 22 C 1.38994 * 119.93079 * 359.94374 * 21 20 19 23 23 C 1.38646 * 119.88668 * 0.11132 * 22 21 20 24 24 O 1.36119 * 120.78191 * 180.20440 * 22 21 20 25 25 C 1.43171 * 116.71306 * 342.71661 * 24 22 21 26 26 C 1.53475 * 108.23111 * 46.27505 * 25 24 22 27 27 O 1.36199 * 119.31985 * 179.80823 * 21 20 19 28 28 H 1.08995 * 109.46954 * 305.82106 * 1 2 3 29 29 H 1.08998 * 109.46910 * 65.82566 * 1 2 3 30 30 H 1.09001 * 109.47194 * 185.82125 * 1 2 3 31 31 H 1.09006 * 109.46791 * 240.00116 * 2 1 3 32 32 H 1.08995 * 109.47093 * 120.00407 * 2 1 3 33 33 H 0.97004 * 119.99726 * 179.97438 * 8 7 5 34 34 H 1.00903 * 111.00135 * 28.26973 * 13 3 2 35 35 H 1.08996 * 109.47005 * 64.30322 * 14 13 3 36 36 H 1.09002 * 109.47167 * 304.30716 * 14 13 3 37 37 H 0.97006 * 119.99693 * 4.94259 * 17 15 14 38 38 H 1.08002 * 119.97815 * 0.03717 * 19 18 17 39 39 H 1.08002 * 119.92009 * 180.26819 * 20 19 18 40 40 H 1.08004 * 119.99140 * 179.89155 * 23 22 21 41 41 H 1.08996 * 109.71397 * 286.59027 * 25 24 22 42 42 H 1.09005 * 109.71206 * 165.95713 * 25 24 22 43 43 H 1.08999 * 109.70806 * 180.54600 * 26 25 24 44 44 H 1.08999 * 109.74426 * 59.93482 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 0.8419 5 6 3.5420 1.4443 0.1235 6 1 4.1472 1.8889 -0.6527 7 6 4.1436 0.8782 1.2275 8 7 3.4066 0.3372 2.1730 9 14 6.0053 0.8798 1.3803 10 1 6.5988 1.5451 0.1928 11 1 6.4006 1.6153 2.6083 12 1 6.4965 -0.5192 1.4616 13 7 1.6512 2.0993 -1.2551 14 6 1.5084 3.5493 -1.0682 15 6 1.0078 4.1737 -2.3451 16 8 0.7917 3.4790 -3.3157 17 7 0.8002 5.5038 -2.4088 18 6 0.2375 6.0707 -3.5597 19 6 -0.6947 5.3570 -4.3010 20 6 -1.2535 5.9176 -5.4330 21 6 -0.8822 7.1919 -5.8357 22 6 0.0537 7.9072 -5.0979 23 6 0.6153 7.3437 -3.9624 24 8 0.4276 9.1606 -5.4749 25 6 0.1264 9.5445 -6.8209 26 6 -1.3244 9.1439 -7.1212 27 8 -1.4411 7.7265 -6.9568 28 1 -0.3633 0.6014 0.8332 29 1 -0.3633 0.4208 -0.9375 30 1 -0.3634 -1.0224 0.1042 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8299 -0.0613 2.9495 34 1 0.8033 1.6973 -1.6261 35 1 2.4758 3.9792 -0.8084 36 1 0.7971 3.7439 -0.2654 37 1 1.0404 6.0686 -1.6576 38 1 -0.9863 4.3648 -3.9898 39 1 -1.9816 5.3625 -6.0058 40 1 1.3439 7.8973 -3.3888 41 1 0.7991 9.0322 -7.5087 42 1 0.2400 10.6231 -6.9298 43 1 -1.5766 9.4172 -8.1458 44 1 -1.9971 9.6508 -6.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:05 Heat of formation + Delta-G solvation = -97.250847 kcal Electronic energy + Delta-G solvation = -26280.183818 eV Core-core repulsion = 22390.476500 eV Total energy + Delta-G solvation = -3889.707317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30437 -41.22658 -38.78370 -38.23281 -37.76661 -35.50504 -34.40018 -32.93307 -31.95111 -31.28310 -29.49377 -28.67918 -26.91635 -25.59830 -24.43167 -23.91231 -22.42157 -21.52623 -21.12459 -19.83211 -18.78796 -18.50793 -18.30359 -17.91019 -17.21921 -16.74661 -16.62522 -16.30920 -15.92759 -15.74509 -15.52957 -15.36513 -15.07845 -14.90197 -14.78782 -14.45713 -14.16850 -13.86543 -13.70608 -13.62409 -13.15555 -13.07386 -12.99545 -12.73492 -12.49126 -12.40987 -11.98847 -11.96819 -11.71732 -11.50363 -11.47712 -11.06326 -11.00846 -10.77536 -10.41136 -9.61469 -9.03073 -8.75935 -8.05064 -6.16467 0.11336 0.22930 1.42241 1.45713 1.54481 1.56849 1.75832 2.11152 2.39687 2.46751 2.67049 3.20508 3.29012 3.63685 3.68505 3.75683 3.97343 4.05696 4.12156 4.23060 4.35185 4.44790 4.49327 4.51692 4.57284 4.59527 4.62403 4.69717 4.73666 4.84052 5.04816 5.10242 5.19442 5.22837 5.29570 5.36627 5.56716 5.71241 5.76418 5.87728 5.88833 6.28579 6.37866 6.38395 6.53415 6.90815 6.96431 7.12239 7.52479 8.98250 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.002384 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.418571 B =11743.304459 C =12610.331015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.226 3.774 4 H -0.014 1.014 5 C -0.511 4.511 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.682 5.682 14 C 0.054 3.946 15 C 0.521 3.479 16 O -0.541 6.541 17 N -0.660 5.660 18 C 0.150 3.850 19 C -0.130 4.130 20 C -0.099 4.099 21 C 0.025 3.975 22 C 0.064 3.936 23 C -0.143 4.143 24 O -0.319 6.319 25 C 0.014 3.986 26 C 0.014 3.986 27 O -0.323 6.323 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.428 0.572 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.077 0.923 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 20.455 -14.411 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.118 3.882 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.316 5.316 14 C -0.078 4.078 15 C 0.310 3.690 16 O -0.417 6.417 17 N -0.308 5.308 18 C 0.055 3.945 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.020 4.020 22 C 0.018 3.982 23 C -0.164 4.164 24 O -0.234 6.234 25 C -0.061 4.061 26 C -0.061 4.061 27 O -0.238 6.238 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.267 0.733 38 H 0.149 0.851 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.096 0.904 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.217 19.924 -15.147 27.033 hybrid contribution 0.375 0.087 1.067 1.134 sum -9.842 20.011 -14.080 26.373 Atomic orbital electron populations 1.21757 0.96297 1.01268 1.00429 1.21631 0.94219 0.99125 1.01233 1.19011 0.94218 0.90670 0.84270 0.99675 1.21487 0.92661 1.36611 1.04242 0.93294 1.25636 1.02111 0.95286 0.95574 1.69991 1.36131 1.39667 1.09988 0.85565 0.81003 0.77576 0.77788 1.19747 1.20461 1.20957 1.60350 1.39045 1.01146 1.31033 1.21758 1.02426 0.91070 0.92575 1.21085 0.75998 0.81718 0.90235 1.90679 1.50652 1.62281 1.38095 1.43401 1.62106 1.07914 1.17353 1.17428 0.94535 0.92771 0.89785 1.20961 0.96860 1.00949 0.96250 1.20443 1.01297 0.93330 0.96704 1.18929 0.96912 0.95323 0.90868 1.18585 0.96202 0.86714 0.96736 1.20175 1.02953 0.95241 0.98063 1.86273 1.78176 1.26980 1.31943 1.23996 0.96354 1.04837 0.80900 1.23968 0.97021 0.78379 1.06683 1.86300 1.74606 1.24764 1.38132 0.93814 0.92963 0.92453 0.94952 0.90926 0.93012 0.84793 0.87864 0.91092 0.73291 0.85088 0.83360 0.82702 0.90438 0.82575 0.82878 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.99 0.69 -4.60 16 2 C -0.12 -5.84 5.34 30.60 0.16 -5.68 16 3 C 0.23 11.11 2.03 44.17 0.09 11.20 16 4 H -0.01 -0.75 7.69 -2.39 -0.02 -0.76 16 5 C -0.51 -28.02 8.77 25.60 0.22 -27.80 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.67 5.29 84.66 0.45 1.12 16 8 N -0.92 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.68 -29.28 6.01 -499.48 -3.00 -32.28 16 14 C 0.05 1.87 6.02 85.56 0.52 2.38 16 15 C 0.52 16.72 7.60 87.66 0.67 17.39 16 16 O -0.54 -21.14 13.76 -3.11 -0.04 -21.19 16 17 N -0.66 -16.11 5.35 -303.47 -1.62 -17.74 16 18 C 0.15 3.85 6.29 38.09 0.24 4.09 16 19 C -0.13 -3.56 8.65 22.39 0.19 -3.37 16 20 C -0.10 -2.43 9.95 22.36 0.22 -2.20 16 21 C 0.03 0.60 6.50 22.56 0.15 0.74 16 22 C 0.06 1.46 6.49 22.55 0.15 1.61 16 23 C -0.14 -3.27 9.87 22.49 0.22 -3.05 16 24 O -0.32 -6.21 10.42 -82.68 -0.86 -7.07 16 25 C 0.01 0.15 7.26 72.14 0.52 0.67 16 26 C 0.01 0.15 7.26 72.14 0.52 0.68 16 27 O -0.32 -6.52 10.42 -83.60 -0.87 -7.39 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.80 6.63 -2.39 -0.02 1.79 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 33 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.33 13.69 6.07 -89.69 -0.54 13.15 16 35 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 37 H 0.43 7.41 8.82 -92.70 -0.82 6.59 16 38 H 0.13 3.96 6.38 -2.91 -0.02 3.94 16 39 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.16 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.18 361.94 0.57 -69.61 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.32 Total: 28.51 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.02 Total: -6.81 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.38 Total: -101.37 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.77 Total: -35.65 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.18 0.57 -69.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.641 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds