Wall clock time and date at job start Tue Mar 31 2020 12:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46677 * 2 1 4 4 H 1.08998 * 109.47712 * 305.45743 * 3 2 1 5 5 C 1.50703 * 109.47261 * 185.45374 * 3 2 1 6 6 H 1.07992 * 120.00564 * 245.32750 * 5 3 2 7 7 C 1.37882 * 119.99758 * 65.32187 * 5 3 2 8 8 N 1.31508 * 120.00104 * 186.10645 * 7 5 3 9 9 Si 1.86801 * 119.99883 * 6.10774 * 7 5 3 10 10 H 1.48504 * 109.47287 * 269.99618 * 9 7 5 11 11 H 1.48505 * 109.47108 * 30.00009 * 9 7 5 12 12 H 1.48501 * 109.47190 * 149.99421 * 9 7 5 13 13 N 1.46505 * 109.47208 * 65.46012 * 3 2 1 14 14 C 1.34777 * 119.99797 * 274.99775 * 13 3 2 15 15 O 1.21361 * 120.00028 * 359.97438 * 14 13 3 16 16 C 1.49351 * 119.99773 * 179.97438 * 14 13 3 17 17 O 1.21375 * 120.00142 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99773 * 180.02562 * 16 14 13 19 19 C 1.39725 * 120.00008 * 184.81937 * 18 16 14 20 20 C 1.38987 * 120.04388 * 331.99897 * 19 18 16 21 21 C 1.38110 * 120.03170 * 179.78926 * 20 19 18 22 22 C 1.38229 * 120.12829 * 0.47031 * 21 20 19 23 23 C 1.38781 * 120.09553 * 359.78813 * 22 21 20 24 24 O 1.35900 * 120.01485 * 179.97438 * 23 22 21 25 25 C 1.42901 * 117.00111 * 359.97438 * 24 23 22 26 26 C 1.38603 * 119.96438 * 359.97438 * 23 22 21 27 27 C 1.50698 * 120.06525 * 180.02562 * 26 23 22 28 28 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47340 * 299.99437 * 1 2 3 30 30 H 1.09001 * 109.47472 * 60.00063 * 1 2 3 31 31 H 1.09001 * 109.47340 * 240.00563 * 2 1 3 32 32 H 1.08990 * 109.47069 * 120.00277 * 2 1 3 33 33 H 0.96999 * 120.00272 * 354.97543 * 8 7 5 34 34 H 0.97004 * 120.00009 * 94.99005 * 13 3 2 35 35 H 0.97004 * 119.99817 * 4.81908 * 18 16 14 36 36 H 1.08000 * 119.98360 * 0.02562 * 20 19 18 37 37 H 1.07991 * 119.93538 * 180.22916 * 21 20 19 38 38 H 1.08003 * 119.94830 * 179.76084 * 22 21 20 39 39 H 1.09001 * 109.46911 * 299.99950 * 25 24 23 40 40 H 1.09005 * 109.47118 * 59.99729 * 25 24 23 41 41 H 1.09001 * 109.47144 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47348 * 269.98070 * 27 26 23 43 43 H 1.09006 * 109.46886 * 29.98082 * 27 26 23 44 44 H 1.08998 * 109.47513 * 149.97364 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5990 1.9838 -0.8370 5 6 3.5409 1.4448 -0.1350 6 1 4.1554 1.8089 0.6749 7 6 4.1296 0.9819 -1.2928 8 7 5.4379 0.8710 -1.3663 9 14 3.0687 0.5124 -2.7568 10 1 2.7034 -0.9240 -2.6631 11 1 1.8343 1.3380 -2.7587 12 1 3.8249 0.7499 -4.0126 13 7 1.6618 2.0941 1.2565 14 6 0.4454 2.6607 1.3823 15 8 -0.3365 2.6314 0.4546 16 6 0.0597 3.3245 2.6634 17 8 0.8415 3.3533 3.5914 18 7 -1.1569 3.8905 2.7894 19 6 -1.4813 4.5985 3.9495 20 6 -0.8746 4.2719 5.1566 21 6 -1.1922 4.9746 6.3023 22 6 -2.1208 5.9975 6.2538 23 6 -2.7338 6.3245 5.0525 24 8 -3.6469 7.3301 5.0069 25 6 -3.9278 8.0075 6.2333 26 6 -2.4143 5.6250 3.8993 27 6 -3.0782 5.9786 2.5935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9930 1.1826 -0.6344 34 1 2.2869 2.1177 1.9979 35 1 -1.8073 3.8065 2.0746 36 1 -0.1516 3.4706 5.1978 37 1 -0.7171 4.7220 7.2386 38 1 -2.3698 6.5426 7.1523 39 1 -4.3135 7.2945 6.9621 40 1 -3.0130 8.4597 6.6165 41 1 -4.6709 8.7852 6.0569 42 1 -3.9892 5.3913 2.4782 43 1 -3.3270 7.0399 2.5881 44 1 -2.3987 5.7607 1.7696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599968714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:12 Heat of formation + Delta-G solvation = -80.012461 kcal Electronic energy + Delta-G solvation = -26854.660133 eV Core-core repulsion = 22965.700328 eV Total energy + Delta-G solvation = -3888.959805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.17280 -40.11243 -38.77127 -37.42364 -35.70328 -34.75189 -32.71095 -32.43895 -31.56956 -29.60053 -27.93009 -27.57584 -26.85423 -24.82028 -22.60940 -22.24444 -21.54594 -20.47918 -19.75082 -18.90078 -18.35694 -17.36952 -16.63053 -16.36999 -16.12952 -15.90226 -15.70589 -15.63286 -14.96704 -14.47708 -14.12397 -13.74497 -13.64727 -13.52483 -13.40383 -12.83422 -12.74848 -12.55240 -12.41580 -12.39557 -12.30935 -11.92150 -11.89409 -11.57301 -11.17161 -11.13765 -11.00367 -10.80108 -10.56027 -10.43742 -9.89893 -9.77868 -9.24000 -8.97509 -8.61745 -8.44220 -8.34176 -8.19293 -6.62323 -4.30993 0.91290 1.27033 1.76365 2.42704 3.07686 3.30770 3.40181 3.41053 3.53121 3.64927 3.94296 4.35180 4.53934 4.67878 4.76865 4.82075 4.83190 4.96220 5.09849 5.12952 5.19317 5.25444 5.36692 5.50315 5.55599 5.89740 5.95561 5.98593 6.01576 6.05556 6.08882 6.17295 6.34899 6.53277 6.61988 6.66709 6.71630 6.83811 6.96463 7.11132 7.16074 7.19905 7.46249 7.71752 8.13043 8.22426 8.44598 8.72647 9.40082 10.78751 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.002706 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.167940 B =10345.378444 C =10677.478598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.055 0.945 5 C -0.613 4.613 6 H 0.065 0.935 7 C 0.037 3.963 8 N -0.901 5.901 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.660 5.660 14 C 0.496 3.504 15 O -0.529 6.529 16 C 0.508 3.492 17 O -0.499 6.499 18 N -0.645 5.645 19 C 0.184 3.816 20 C -0.162 4.162 21 C -0.067 4.067 22 C -0.223 4.223 23 C 0.142 3.858 24 O -0.314 6.314 25 C 0.028 3.972 26 C -0.145 4.145 27 C -0.107 4.107 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.270 0.730 34 H 0.406 0.594 35 H 0.424 0.576 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.567 10.036 14.145 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.136 3.864 4 H 0.072 0.928 5 C -0.651 4.651 6 H 0.083 0.917 7 C -0.169 4.169 8 N -0.534 5.534 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.291 3.709 17 O -0.372 6.372 18 N -0.291 5.291 19 C 0.088 3.912 20 C -0.183 4.183 21 C -0.086 4.086 22 C -0.242 4.242 23 C 0.096 3.904 24 O -0.227 6.227 25 C -0.067 4.067 26 C -0.149 4.149 27 C -0.164 4.164 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.506 9.421 12.354 24.164 hybrid contribution 0.091 0.694 2.056 2.172 sum -18.416 10.116 14.411 25.478 Atomic orbital electron populations 1.21917 0.97097 0.99419 1.01974 1.22277 0.94060 0.99496 1.01885 1.19485 0.96517 0.88765 0.81592 0.92772 1.22149 0.89273 1.49065 1.04628 0.91675 1.25716 0.97523 0.93603 1.00066 1.70817 1.04212 1.42156 1.36194 0.83957 0.75316 0.77207 0.75856 1.20587 1.19807 1.21263 1.46197 1.13396 1.52452 1.18787 1.19622 0.84452 0.81347 0.87142 1.90742 1.50767 1.59338 1.39938 1.20908 0.81461 0.79014 0.89487 1.90687 1.50571 1.55889 1.40048 1.43197 1.15806 1.51133 1.18925 1.17337 0.95997 0.91712 0.86126 1.21527 1.03201 1.03172 0.90351 1.20831 0.95481 0.94093 0.98155 1.21197 1.02875 1.03176 0.96976 1.18392 0.90171 0.88718 0.93079 1.86041 1.56640 1.45705 1.34341 1.23051 1.01341 0.96576 0.85725 1.18821 1.03151 0.97615 0.95281 1.20567 0.99980 1.02873 0.92996 0.94538 0.93470 0.92640 0.91752 0.92330 0.91960 0.75870 0.73752 0.82956 0.85361 0.85501 0.92645 0.92640 0.88298 0.91182 0.90652 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.52 37.16 0.32 -2.43 16 2 C -0.14 -2.94 5.20 -26.73 -0.14 -3.08 16 3 C 0.24 5.51 1.81 -69.08 -0.13 5.39 16 4 H 0.05 1.34 6.06 -51.93 -0.31 1.03 16 5 C -0.61 -16.28 9.09 -34.44 -0.31 -16.60 16 6 H 0.07 1.83 7.95 -52.49 -0.42 1.41 16 7 C 0.04 1.03 5.43 -17.82 -0.10 0.93 16 8 N -0.90 -26.61 13.69 55.43 0.76 -25.85 16 9 Si 1.05 24.62 25.36 -169.99 -4.31 20.30 16 10 H -0.28 -6.19 6.76 56.52 0.38 -5.80 16 11 H -0.27 -6.10 6.36 56.52 0.36 -5.74 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.66 -13.30 5.02 -55.39 -0.28 -13.58 16 14 C 0.50 9.16 6.47 -11.63 -0.08 9.08 16 15 O -0.53 -10.36 13.62 5.49 0.07 -10.29 16 16 C 0.51 8.25 7.77 -11.63 -0.09 8.16 16 17 O -0.50 -8.69 13.49 5.48 0.07 -8.62 16 18 N -0.64 -8.80 4.90 -10.31 -0.05 -8.85 16 19 C 0.18 2.44 6.40 -83.77 -0.54 1.91 16 20 C -0.16 -2.14 8.77 -39.35 -0.35 -2.49 16 21 C -0.07 -0.72 10.03 -39.63 -0.40 -1.12 16 22 C -0.22 -2.24 9.04 -39.38 -0.36 -2.60 16 23 C 0.14 1.59 6.66 -39.25 -0.26 1.33 16 24 O -0.31 -3.11 9.54 -19.43 -0.19 -3.30 16 25 C 0.03 0.17 9.81 101.05 0.99 1.16 16 26 C -0.15 -1.75 5.91 -104.28 -0.62 -2.37 16 27 C -0.11 -1.09 9.23 36.00 0.33 -0.76 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.87 5.64 -51.93 -0.29 0.57 16 30 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.06 1.41 4.43 -51.93 -0.23 1.18 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.27 7.93 8.72 -40.82 -0.36 7.57 16 34 H 0.41 7.88 8.00 -40.82 -0.33 7.55 16 35 H 0.42 5.14 7.00 -40.82 -0.29 4.85 16 36 H 0.15 2.19 5.66 -52.49 -0.30 1.90 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.13 0.94 6.29 -52.48 -0.33 0.61 16 39 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 40 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 44 H 0.07 0.68 7.04 -51.93 -0.37 0.31 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.57 354.12 -6.07 -36.65 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.78 Total: 11.67 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.71 Total: -3.48 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.43 Total: -48.27 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.04 Total: -22.21 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.31 Total: 20.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.57 -6.07 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.364 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds