Wall clock time and date at job start Tue Mar 31 2020 12:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46677 * 2 1 4 4 H 1.08998 * 109.47712 * 305.45743 * 3 2 1 5 5 C 1.50703 * 109.47261 * 185.45374 * 3 2 1 6 6 H 1.07992 * 120.00564 * 245.32750 * 5 3 2 7 7 C 1.37882 * 119.99758 * 65.32187 * 5 3 2 8 8 N 1.31508 * 120.00104 * 186.10645 * 7 5 3 9 9 Si 1.86801 * 119.99883 * 6.10774 * 7 5 3 10 10 H 1.48504 * 109.47287 * 269.99618 * 9 7 5 11 11 H 1.48505 * 109.47108 * 30.00009 * 9 7 5 12 12 H 1.48501 * 109.47190 * 149.99421 * 9 7 5 13 13 N 1.46505 * 109.47208 * 65.46012 * 3 2 1 14 14 C 1.34777 * 119.99797 * 274.99775 * 13 3 2 15 15 O 1.21361 * 120.00028 * 359.97438 * 14 13 3 16 16 C 1.49351 * 119.99773 * 179.97438 * 14 13 3 17 17 O 1.21375 * 120.00142 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99773 * 180.02562 * 16 14 13 19 19 C 1.39725 * 120.00008 * 184.81937 * 18 16 14 20 20 C 1.38987 * 120.04388 * 331.99897 * 19 18 16 21 21 C 1.38110 * 120.03170 * 179.78926 * 20 19 18 22 22 C 1.38229 * 120.12829 * 0.47031 * 21 20 19 23 23 C 1.38781 * 120.09553 * 359.78813 * 22 21 20 24 24 O 1.35900 * 120.01485 * 179.97438 * 23 22 21 25 25 C 1.42901 * 117.00111 * 359.97438 * 24 23 22 26 26 C 1.38603 * 119.96438 * 359.97438 * 23 22 21 27 27 C 1.50698 * 120.06525 * 180.02562 * 26 23 22 28 28 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47340 * 299.99437 * 1 2 3 30 30 H 1.09001 * 109.47472 * 60.00063 * 1 2 3 31 31 H 1.09001 * 109.47340 * 240.00563 * 2 1 3 32 32 H 1.08990 * 109.47069 * 120.00277 * 2 1 3 33 33 H 0.96999 * 120.00272 * 354.97543 * 8 7 5 34 34 H 0.97004 * 120.00009 * 94.99005 * 13 3 2 35 35 H 0.97004 * 119.99817 * 4.81908 * 18 16 14 36 36 H 1.08000 * 119.98360 * 0.02562 * 20 19 18 37 37 H 1.07991 * 119.93538 * 180.22916 * 21 20 19 38 38 H 1.08003 * 119.94830 * 179.76084 * 22 21 20 39 39 H 1.09001 * 109.46911 * 299.99950 * 25 24 23 40 40 H 1.09005 * 109.47118 * 59.99729 * 25 24 23 41 41 H 1.09001 * 109.47144 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47348 * 269.98070 * 27 26 23 43 43 H 1.09006 * 109.46886 * 29.98082 * 27 26 23 44 44 H 1.08998 * 109.47513 * 149.97364 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5990 1.9838 -0.8370 5 6 3.5409 1.4448 -0.1350 6 1 4.1554 1.8089 0.6749 7 6 4.1296 0.9819 -1.2928 8 7 5.4379 0.8710 -1.3663 9 14 3.0687 0.5124 -2.7568 10 1 2.7034 -0.9240 -2.6631 11 1 1.8343 1.3380 -2.7587 12 1 3.8249 0.7499 -4.0126 13 7 1.6618 2.0941 1.2565 14 6 0.4454 2.6607 1.3823 15 8 -0.3365 2.6314 0.4546 16 6 0.0597 3.3245 2.6634 17 8 0.8415 3.3533 3.5914 18 7 -1.1569 3.8905 2.7894 19 6 -1.4813 4.5985 3.9495 20 6 -0.8746 4.2719 5.1566 21 6 -1.1922 4.9746 6.3023 22 6 -2.1208 5.9975 6.2538 23 6 -2.7338 6.3245 5.0525 24 8 -3.6469 7.3301 5.0069 25 6 -3.9278 8.0075 6.2333 26 6 -2.4143 5.6250 3.8993 27 6 -3.0782 5.9786 2.5935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9930 1.1826 -0.6344 34 1 2.2869 2.1177 1.9979 35 1 -1.8073 3.8065 2.0746 36 1 -0.1516 3.4706 5.1978 37 1 -0.7171 4.7220 7.2386 38 1 -2.3698 6.5426 7.1523 39 1 -4.3135 7.2945 6.9621 40 1 -3.0130 8.4597 6.6165 41 1 -4.6709 8.7852 6.0569 42 1 -3.9892 5.3913 2.4782 43 1 -3.3270 7.0399 2.5881 44 1 -2.3987 5.7607 1.7696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599968714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:08 Heat of formation + Delta-G solvation = -101.429039 kcal Electronic energy + Delta-G solvation = -26855.588825 eV Core-core repulsion = 22965.700328 eV Total energy + Delta-G solvation = -3889.888497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33873 -41.15339 -40.06890 -38.41194 -37.36014 -35.87799 -34.51172 -33.52305 -33.20325 -30.55287 -29.36136 -28.50141 -27.71180 -26.16374 -24.28217 -23.41562 -22.53677 -21.84036 -21.34663 -20.38987 -19.44299 -19.00854 -17.93399 -17.39208 -17.25408 -16.98979 -16.71754 -16.69483 -16.20292 -15.89969 -15.42485 -15.10571 -14.73179 -14.53457 -14.52147 -14.45390 -14.35491 -14.06213 -13.69297 -13.65190 -13.15591 -13.02645 -12.85394 -12.74424 -12.55225 -12.39842 -12.31826 -12.18179 -11.87493 -11.71049 -11.50843 -11.39545 -10.99294 -10.71587 -10.63702 -10.04964 -9.33817 -9.09709 -8.82042 -6.51165 -0.15335 0.38039 0.56010 1.18387 1.43299 1.53043 1.69392 2.05255 2.30712 2.41037 2.66776 2.72212 3.01208 3.35379 3.76096 3.91986 4.06754 4.21440 4.25958 4.34209 4.36170 4.43757 4.44323 4.47007 4.48462 4.70583 4.74871 4.77591 4.78741 5.02324 5.04697 5.11277 5.16414 5.21547 5.23760 5.29806 5.36016 5.46398 5.49183 5.55754 5.74594 5.91672 5.96900 6.37107 6.42031 6.46167 6.64109 6.94585 7.27935 8.57973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027333 B = 0.002706 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.167940 B =10345.378444 C =10677.478598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.244 3.756 4 H 0.042 0.958 5 C -0.610 4.610 6 H 0.037 0.963 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 1.080 2.920 10 H -0.254 1.254 11 H -0.256 1.256 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.500 3.500 15 O -0.537 6.537 16 C 0.515 3.485 17 O -0.514 6.514 18 N -0.629 5.629 19 C 0.161 3.839 20 C -0.182 4.182 21 C -0.068 4.068 22 C -0.214 4.214 23 C 0.137 3.863 24 O -0.326 6.326 25 C 0.017 3.983 26 C -0.154 4.154 27 C -0.105 4.105 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.257 0.743 34 H 0.408 0.592 35 H 0.430 0.570 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.480 10.732 15.163 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.141 3.859 4 H 0.060 0.940 5 C -0.649 4.649 6 H 0.055 0.945 7 C -0.209 4.209 8 N -0.568 5.568 9 Si 0.902 3.098 10 H -0.180 1.180 11 H -0.180 1.180 12 H -0.215 1.215 13 N -0.317 5.317 14 C 0.280 3.720 15 O -0.416 6.416 16 C 0.297 3.703 17 O -0.389 6.389 18 N -0.275 5.275 19 C 0.066 3.934 20 C -0.202 4.202 21 C -0.086 4.086 22 C -0.233 4.233 23 C 0.091 3.909 24 O -0.239 6.239 25 C -0.077 4.077 26 C -0.157 4.157 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.243 0.757 35 H 0.270 0.730 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.471 10.144 13.412 27.272 hybrid contribution 0.915 0.644 1.911 2.215 sum -20.555 10.788 15.323 27.815 Atomic orbital electron populations 1.21822 0.94826 1.01175 1.01726 1.22186 0.96040 0.97628 1.01727 1.19199 0.93960 0.90277 0.82490 0.94046 1.22333 0.91346 1.47637 1.03542 0.94507 1.26990 0.97716 0.93450 1.02782 1.70930 1.05281 1.44529 1.36050 0.83575 0.74553 0.78765 0.72862 1.17957 1.18037 1.21483 1.46024 1.14409 1.53283 1.17989 1.19888 0.83571 0.80604 0.87914 1.90728 1.50846 1.59401 1.40595 1.20333 0.82269 0.79421 0.88259 1.90697 1.51301 1.56846 1.40097 1.43013 1.14776 1.50285 1.19429 1.17462 0.97342 0.92786 0.85782 1.21527 1.03589 1.03635 0.91442 1.21107 0.95467 0.93756 0.98268 1.21539 1.01574 1.02451 0.97759 1.18551 0.90356 0.88892 0.93116 1.86034 1.56024 1.45304 1.36587 1.23379 1.02456 0.97141 0.84712 1.19022 1.02835 0.97334 0.96525 1.20582 1.00273 1.03269 0.92069 0.91803 0.93490 0.93073 0.92239 0.92198 0.93405 0.75662 0.72973 0.84665 0.83055 0.82479 0.91396 0.91756 0.86292 0.89910 0.90328 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.52 71.98 0.61 -4.25 16 2 C -0.14 -5.65 5.20 30.59 0.16 -5.49 16 3 C 0.24 11.25 1.81 44.24 0.08 11.33 16 4 H 0.04 2.03 6.06 -2.39 -0.01 2.02 16 5 C -0.61 -33.17 9.09 25.60 0.23 -32.94 16 6 H 0.04 2.16 7.95 -2.91 -0.02 2.13 16 7 C -0.01 -0.54 5.43 84.66 0.46 -0.08 16 8 N -0.93 -56.61 13.69 21.45 0.29 -56.32 16 9 Si 1.08 49.06 25.36 68.60 1.74 50.80 16 10 H -0.25 -10.52 6.76 99.48 0.67 -9.84 16 11 H -0.26 -10.85 6.36 99.48 0.63 -10.22 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 N -0.67 -27.11 5.02 -447.52 -2.25 -29.36 16 14 C 0.50 18.33 6.47 87.24 0.56 18.90 16 15 O -0.54 -20.52 13.62 -3.28 -0.04 -20.56 16 16 C 0.51 16.66 7.77 87.24 0.68 17.34 16 17 O -0.51 -18.14 13.49 -3.32 -0.04 -18.19 16 18 N -0.63 -16.85 4.90 -304.88 -1.49 -18.34 16 19 C 0.16 4.16 6.40 38.20 0.24 4.41 16 20 C -0.18 -4.69 8.77 22.42 0.20 -4.50 16 21 C -0.07 -1.34 10.03 22.24 0.22 -1.11 16 22 C -0.21 -3.71 9.04 22.40 0.20 -3.51 16 23 C 0.14 2.77 6.66 22.49 0.15 2.92 16 24 O -0.33 -5.63 9.54 -92.43 -0.88 -6.51 16 25 C 0.02 0.15 9.81 113.37 1.11 1.26 16 26 C -0.15 -3.50 5.91 -19.64 -0.12 -3.62 16 27 C -0.11 -2.00 9.23 71.24 0.66 -1.34 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.63 5.64 -2.39 -0.01 1.62 16 30 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16 31 H 0.06 2.50 4.43 -2.39 -0.01 2.49 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.26 15.74 8.72 -92.71 -0.81 14.93 16 34 H 0.41 16.23 8.00 -92.70 -0.74 15.49 16 35 H 0.43 10.09 7.00 -92.70 -0.65 9.44 16 36 H 0.14 3.94 5.66 -2.91 -0.02 3.93 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.16 1.70 6.29 -2.91 -0.02 1.68 16 39 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 40 H 0.06 0.45 7.66 -2.38 -0.02 0.43 16 41 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.43 7.53 -2.38 -0.02 1.41 16 44 H 0.06 1.21 7.04 -2.39 -0.02 1.19 16 Total: -1.00 -66.67 354.12 2.31 -64.36 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.47 Total: 34.78 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.46 Total: -0.67 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.45 Total: -104.02 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.97 Total: -45.26 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.74 Total: 50.80 kcal Total: -66.67 2.31 -64.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.066 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds