Wall clock time and date at job start Tue Mar 31 2020 12:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46859 * 2 1 4 4 H 1.09002 * 109.47328 * 54.99965 * 3 2 1 5 5 C 1.50702 * 109.47089 * 175.00079 * 3 2 1 6 6 H 1.07997 * 120.00183 * 120.00107 * 5 3 2 7 7 C 1.37879 * 119.99551 * 299.99901 * 5 3 2 8 8 N 1.31505 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99482 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47356 * 60.00013 * 9 7 5 11 11 H 1.48495 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47493 * 300.00111 * 9 7 5 13 13 N 1.46499 * 109.47336 * 295.00007 * 3 2 1 14 14 C 1.34778 * 119.99795 * 84.99624 * 13 3 2 15 15 O 1.21363 * 120.00196 * 0.02562 * 14 13 3 16 16 C 1.49356 * 119.99882 * 179.97438 * 14 13 3 17 17 O 1.21376 * 120.00194 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99882 * 180.02562 * 16 14 13 19 19 C 1.39721 * 119.99446 * 174.48248 * 18 16 14 20 20 C 1.38983 * 120.05380 * 335.13732 * 19 18 16 21 21 C 1.38110 * 120.03641 * 179.78764 * 20 19 18 22 22 C 1.38224 * 120.13053 * 0.47263 * 21 20 19 23 23 C 1.38779 * 120.09247 * 359.78441 * 22 21 20 24 24 O 1.35903 * 120.01442 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00051 * 359.97438 * 24 23 22 26 26 C 1.38613 * 119.96643 * 359.97438 * 23 22 21 27 27 C 1.50703 * 120.06219 * 180.02562 * 26 23 22 28 28 H 1.09007 * 109.46615 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47007 * 299.99473 * 1 2 3 30 30 H 1.08999 * 109.47136 * 60.00257 * 1 2 3 31 31 H 1.08995 * 109.47007 * 240.00526 * 2 1 3 32 32 H 1.08999 * 109.47136 * 119.99743 * 2 1 3 33 33 H 0.97001 * 119.99980 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00100 * 264.99973 * 13 3 2 35 35 H 0.96998 * 120.00238 * 354.48929 * 18 16 14 36 36 H 1.08003 * 119.98347 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.93553 * 180.23173 * 21 20 19 38 38 H 1.07997 * 119.95253 * 179.76316 * 22 21 20 39 39 H 1.09002 * 109.46858 * 299.99170 * 25 24 23 40 40 H 1.08996 * 109.47661 * 59.99358 * 25 24 23 41 41 H 1.09000 * 109.47086 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.46759 * 269.98089 * 27 26 23 43 43 H 1.08996 * 109.47428 * 29.97702 * 27 26 23 44 44 H 1.08992 * 109.46962 * 149.98068 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8802 1.3811 10 1 6.5005 2.2801 1.3807 11 1 6.3979 0.2159 2.6497 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3669 15 8 -0.3399 2.6325 -0.4334 16 6 0.0401 3.3326 -2.6429 17 8 0.8153 3.3649 -3.5763 18 7 -1.1771 3.8999 -2.7578 19 6 -1.5045 4.6241 -3.9070 20 6 -0.5007 5.2031 -4.6743 21 6 -0.8244 5.9153 -5.8125 22 6 -2.1471 6.0623 -6.1862 23 6 -3.1540 5.4909 -5.4211 24 8 -4.4539 5.6370 -5.7897 25 6 -4.7111 6.3916 -6.9755 26 6 -2.8332 4.7712 -4.2807 27 6 -3.9250 4.1493 -3.4485 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9494 34 1 2.2719 2.1233 -1.9977 35 1 -1.8257 3.8054 -2.0428 36 1 0.5333 5.0930 -4.3825 37 1 -0.0429 6.3614 -6.4097 38 1 -2.3972 6.6230 -7.0747 39 1 -4.3261 7.4040 -6.8526 40 1 -4.2180 5.9159 -7.8232 41 1 -5.7854 6.4305 -7.1556 42 1 -4.2506 4.8587 -2.6876 43 1 -4.7681 3.8914 -4.0893 44 1 -3.5458 3.2482 -2.9667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599968715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:18 Heat of formation + Delta-G solvation = -81.062076 kcal Electronic energy + Delta-G solvation = -26761.188323 eV Core-core repulsion = 22872.183004 eV Total energy + Delta-G solvation = -3889.005320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.09214 -40.02220 -38.60984 -37.34801 -35.48553 -34.65222 -32.67239 -32.36598 -31.02267 -29.52750 -27.89696 -27.33124 -26.79361 -24.77864 -23.09444 -22.20507 -21.44390 -20.27685 -19.52361 -18.73969 -18.24173 -16.72137 -16.37688 -16.17740 -16.08765 -15.87525 -15.47564 -15.24286 -15.09837 -14.35023 -14.25128 -13.75308 -13.64474 -13.50290 -13.33880 -12.76807 -12.72877 -12.39905 -12.29066 -12.13776 -11.84033 -11.63425 -11.52066 -11.33493 -11.14973 -11.09999 -10.96088 -10.86284 -10.43266 -10.35697 -10.28447 -9.72049 -9.17161 -9.07738 -8.58375 -8.39007 -8.12876 -8.05249 -6.18997 -4.28917 0.97117 1.31221 1.89936 2.52142 3.13121 3.24198 3.29235 3.31496 3.51086 3.76278 4.04814 4.31586 4.58231 4.71914 4.80543 4.84995 4.96075 5.04582 5.12882 5.13376 5.24382 5.29775 5.41156 5.54384 5.58802 6.03525 6.06717 6.09672 6.21537 6.29552 6.34394 6.39661 6.53136 6.70286 6.92369 6.99045 7.10994 7.14896 7.19435 7.24943 7.46978 7.60907 7.75206 7.85675 8.06060 8.40437 8.58786 8.83044 9.37890 10.86328 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002627 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.552615 B =10655.693597 C =11426.449751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.646 5.646 19 C 0.189 3.811 20 C -0.163 4.163 21 C -0.065 4.065 22 C -0.226 4.226 23 C 0.144 3.856 24 O -0.314 6.314 25 C 0.028 3.972 26 C -0.149 4.149 27 C -0.107 4.107 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.424 0.576 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 10.148 -15.263 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.290 3.710 17 O -0.373 6.373 18 N -0.292 5.292 19 C 0.093 3.907 20 C -0.183 4.183 21 C -0.083 4.083 22 C -0.245 4.245 23 C 0.098 3.902 24 O -0.228 6.228 25 C -0.067 4.067 26 C -0.152 4.152 27 C -0.163 4.163 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.263 0.737 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.641 9.903 -14.872 22.479 hybrid contribution 1.049 0.121 -0.247 1.085 sum -12.592 10.025 -15.118 22.082 Atomic orbital electron populations 1.21859 0.98299 0.98464 1.01016 1.21969 0.92656 0.99371 1.02812 1.19028 0.94799 0.89400 0.80052 0.92695 1.21163 0.90278 1.39586 1.06598 0.91806 1.24868 0.98838 0.94579 0.95228 1.69866 1.35381 1.37281 1.09348 0.86464 0.84499 0.78418 0.77497 1.20095 1.21092 1.20052 1.46467 1.13377 1.52381 1.19271 1.19554 0.84619 0.81573 0.86963 1.90750 1.51197 1.59314 1.39385 1.21057 0.81614 0.78798 0.89505 1.90696 1.50801 1.56248 1.39576 1.43271 1.16403 1.50317 1.19168 1.17334 0.92218 0.92974 0.88171 1.21369 1.00495 0.99726 0.96718 1.20799 0.95442 0.96441 0.95665 1.21169 0.93282 1.07300 1.02751 1.18389 0.83003 0.95496 0.93324 1.86037 1.22770 1.70346 1.43600 1.23043 1.02650 0.95172 0.85815 1.18789 0.93385 1.05508 0.97508 1.20556 0.96655 1.00054 0.99076 0.95434 0.92909 0.94651 0.94635 0.87803 0.92360 0.76364 0.73735 0.83358 0.85380 0.85539 0.92647 0.92663 0.88330 0.91152 0.90679 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.67 -13.84 5.01 -55.39 -0.28 -14.11 16 14 C 0.49 9.58 6.45 -11.63 -0.08 9.50 16 15 O -0.53 -11.05 13.62 5.49 0.07 -10.97 16 16 C 0.51 8.54 7.69 -11.63 -0.09 8.45 16 17 O -0.50 -8.92 13.63 5.47 0.07 -8.84 16 18 N -0.65 -9.23 4.96 -10.31 -0.05 -9.29 16 19 C 0.19 2.60 6.41 -83.77 -0.54 2.06 16 20 C -0.16 -2.22 8.71 -39.35 -0.34 -2.56 16 21 C -0.06 -0.72 10.03 -39.63 -0.40 -1.12 16 22 C -0.23 -2.33 9.04 -39.39 -0.36 -2.68 16 23 C 0.14 1.65 6.66 -39.24 -0.26 1.39 16 24 O -0.31 -3.18 9.54 -19.43 -0.19 -3.37 16 25 C 0.03 0.17 9.81 101.05 0.99 1.16 16 26 C -0.15 -1.84 5.91 -104.27 -0.62 -2.45 16 27 C -0.11 -1.11 9.22 36.01 0.33 -0.78 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.03 0.72 5.65 -51.93 -0.29 0.43 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.40 7.82 8.01 -40.82 -0.33 7.50 16 35 H 0.42 5.49 6.87 -40.82 -0.28 5.21 16 36 H 0.15 2.21 5.78 -52.48 -0.30 1.90 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 0.97 6.29 -52.49 -0.33 0.64 16 39 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 40 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 44 H 0.06 0.67 6.98 -51.93 -0.36 0.31 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.19 359.56 -6.92 -36.11 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.85 Total: 12.06 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.73 Total: 1.03 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.30 Total: -46.71 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.18 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.19 -6.92 -36.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.956 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds