Wall clock time and date at job start Tue Mar 31 2020 12:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46859 * 2 1 4 4 H 1.09002 * 109.47328 * 54.99965 * 3 2 1 5 5 C 1.50702 * 109.47089 * 175.00079 * 3 2 1 6 6 H 1.07997 * 120.00183 * 120.00107 * 5 3 2 7 7 C 1.37879 * 119.99551 * 299.99901 * 5 3 2 8 8 N 1.31505 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99482 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47356 * 60.00013 * 9 7 5 11 11 H 1.48495 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47493 * 300.00111 * 9 7 5 13 13 N 1.46499 * 109.47336 * 295.00007 * 3 2 1 14 14 C 1.34778 * 119.99795 * 84.99624 * 13 3 2 15 15 O 1.21363 * 120.00196 * 0.02562 * 14 13 3 16 16 C 1.49356 * 119.99882 * 179.97438 * 14 13 3 17 17 O 1.21376 * 120.00194 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99882 * 180.02562 * 16 14 13 19 19 C 1.39721 * 119.99446 * 174.48248 * 18 16 14 20 20 C 1.38983 * 120.05380 * 335.13732 * 19 18 16 21 21 C 1.38110 * 120.03641 * 179.78764 * 20 19 18 22 22 C 1.38224 * 120.13053 * 0.47263 * 21 20 19 23 23 C 1.38779 * 120.09247 * 359.78441 * 22 21 20 24 24 O 1.35903 * 120.01442 * 179.97438 * 23 22 21 25 25 C 1.42894 * 117.00051 * 359.97438 * 24 23 22 26 26 C 1.38613 * 119.96643 * 359.97438 * 23 22 21 27 27 C 1.50703 * 120.06219 * 180.02562 * 26 23 22 28 28 H 1.09007 * 109.46615 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47007 * 299.99473 * 1 2 3 30 30 H 1.08999 * 109.47136 * 60.00257 * 1 2 3 31 31 H 1.08995 * 109.47007 * 240.00526 * 2 1 3 32 32 H 1.08999 * 109.47136 * 119.99743 * 2 1 3 33 33 H 0.97001 * 119.99980 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00100 * 264.99973 * 13 3 2 35 35 H 0.96998 * 120.00238 * 354.48929 * 18 16 14 36 36 H 1.08003 * 119.98347 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.93553 * 180.23173 * 21 20 19 38 38 H 1.07997 * 119.95253 * 179.76316 * 22 21 20 39 39 H 1.09002 * 109.46858 * 299.99170 * 25 24 23 40 40 H 1.08996 * 109.47661 * 59.99358 * 25 24 23 41 41 H 1.09000 * 109.47086 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.46759 * 269.98089 * 27 26 23 43 43 H 1.08996 * 109.47428 * 29.97702 * 27 26 23 44 44 H 1.08992 * 109.46962 * 149.98068 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8802 1.3811 10 1 6.5005 2.2801 1.3807 11 1 6.3979 0.2159 2.6497 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3669 15 8 -0.3399 2.6325 -0.4334 16 6 0.0401 3.3326 -2.6429 17 8 0.8153 3.3649 -3.5763 18 7 -1.1771 3.8999 -2.7578 19 6 -1.5045 4.6241 -3.9070 20 6 -0.5007 5.2031 -4.6743 21 6 -0.8244 5.9153 -5.8125 22 6 -2.1471 6.0623 -6.1862 23 6 -3.1540 5.4909 -5.4211 24 8 -4.4539 5.6370 -5.7897 25 6 -4.7111 6.3916 -6.9755 26 6 -2.8332 4.7712 -4.2807 27 6 -3.9250 4.1493 -3.4485 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9494 34 1 2.2719 2.1233 -1.9977 35 1 -1.8257 3.8054 -2.0428 36 1 0.5333 5.0930 -4.3825 37 1 -0.0429 6.3614 -6.4097 38 1 -2.3972 6.6230 -7.0747 39 1 -4.3261 7.4040 -6.8526 40 1 -4.2180 5.9159 -7.8232 41 1 -5.7854 6.4305 -7.1556 42 1 -4.2506 4.8587 -2.6876 43 1 -4.7681 3.8914 -4.0893 44 1 -3.5458 3.2482 -2.9667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599968715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:17 Heat of formation + Delta-G solvation = -99.866692 kcal Electronic energy + Delta-G solvation = -26762.003752 eV Core-core repulsion = 22872.183004 eV Total energy + Delta-G solvation = -3889.820749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28935 -41.09893 -39.97949 -38.38355 -37.20011 -35.84154 -34.34515 -33.48087 -32.82949 -30.51351 -29.16874 -28.48721 -27.69250 -26.22591 -24.81987 -23.32142 -22.47453 -21.72349 -21.21530 -20.12589 -19.25669 -18.27323 -17.74983 -17.42346 -17.05248 -16.94645 -16.68644 -16.64592 -16.39862 -15.99392 -15.52722 -15.02284 -14.71413 -14.61371 -14.44472 -14.34576 -13.89162 -13.63661 -13.49047 -13.20141 -13.15809 -13.00356 -12.95946 -12.79484 -12.67037 -12.40228 -12.27773 -12.12760 -12.10754 -11.85241 -11.60195 -11.39365 -11.11829 -10.62088 -10.52513 -9.85850 -9.30661 -9.05985 -8.18418 -6.35506 -0.12829 0.39626 0.63923 1.23880 1.46629 1.47151 1.55322 2.12158 2.32491 2.42209 2.72822 2.77486 3.11411 3.46462 3.77951 3.93513 4.08040 4.22742 4.38301 4.45476 4.47009 4.48521 4.50030 4.54815 4.70745 4.71401 4.76009 4.80188 5.01447 5.04924 5.17703 5.22492 5.24799 5.31447 5.34997 5.38624 5.47761 5.55908 5.66633 5.75810 5.80331 5.99856 6.11056 6.41581 6.50219 6.66242 6.75888 7.08596 7.36217 8.86539 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002627 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.552615 B =10655.693597 C =11426.449751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.516 3.484 17 O -0.511 6.511 18 N -0.632 5.632 19 C 0.164 3.836 20 C -0.183 4.183 21 C -0.064 4.064 22 C -0.216 4.216 23 C 0.139 3.861 24 O -0.326 6.326 25 C 0.017 3.983 26 C -0.157 4.157 27 C -0.105 4.105 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.267 0.733 34 H 0.409 0.591 35 H 0.429 0.571 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 11.157 -17.456 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.593 4.593 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.424 6.424 16 C 0.298 3.702 17 O -0.386 6.386 18 N -0.278 5.278 19 C 0.070 3.930 20 C -0.203 4.203 21 C -0.083 4.083 22 C -0.235 4.235 23 C 0.093 3.907 24 O -0.240 6.240 25 C -0.077 4.077 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.244 0.756 35 H 0.269 0.731 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.389 10.940 -17.101 24.883 hybrid contribution 1.116 -0.084 0.338 1.169 sum -13.272 10.856 -16.763 23.980 Atomic orbital electron populations 1.21713 0.96554 0.99718 1.00417 1.21826 0.94164 0.98541 1.01727 1.18652 0.94114 0.89578 0.80253 0.96658 1.21487 0.91195 1.39632 1.06938 0.91343 1.25678 1.03173 0.94175 0.94890 1.69998 1.37078 1.37860 1.09767 0.85453 0.79216 0.78440 0.77576 1.19761 1.20890 1.19216 1.46231 1.14286 1.52922 1.18418 1.19936 0.83810 0.80874 0.87790 1.90736 1.51546 1.59705 1.40394 1.20359 0.82511 0.79166 0.88145 1.90700 1.51417 1.57036 1.39479 1.43089 1.15328 1.49567 1.19773 1.17472 0.93102 0.94161 0.88294 1.21377 0.99681 1.01191 0.98067 1.21082 0.96695 0.95643 0.94859 1.21523 0.92512 1.06266 1.03199 1.18541 0.84038 0.95064 0.93051 1.86033 1.21819 1.70878 1.45239 1.23379 1.04323 0.95374 0.84622 1.18991 0.93081 1.05694 0.98234 1.20575 0.96292 1.00099 0.99203 0.93202 0.94489 0.94153 0.94168 0.90235 0.92355 0.75572 0.73140 0.85126 0.82961 0.82411 0.91462 0.91650 0.86290 0.90178 0.90149 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.74 16 3 C 0.28 13.82 2.24 44.25 0.10 13.92 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.88 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.67 -28.38 5.01 -447.52 -2.24 -30.62 16 14 C 0.50 19.58 6.45 87.24 0.56 20.14 16 15 O -0.54 -23.30 13.62 -3.29 -0.04 -23.34 16 16 C 0.52 17.55 7.69 87.24 0.67 18.22 16 17 O -0.51 -18.41 13.63 -3.33 -0.05 -18.45 16 18 N -0.63 -18.10 4.96 -304.88 -1.51 -19.61 16 19 C 0.16 4.45 6.41 38.20 0.24 4.70 16 20 C -0.18 -4.89 8.71 22.42 0.20 -4.69 16 21 C -0.06 -1.30 10.03 22.24 0.22 -1.08 16 22 C -0.22 -3.83 9.04 22.40 0.20 -3.63 16 23 C 0.14 2.89 6.66 22.49 0.15 3.04 16 24 O -0.33 -5.76 9.54 -92.46 -0.88 -6.65 16 25 C 0.02 0.15 9.81 113.37 1.11 1.26 16 26 C -0.16 -3.70 5.91 -19.64 -0.12 -3.81 16 27 C -0.11 -2.08 9.22 71.24 0.66 -1.42 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 30 H 0.04 1.64 5.65 -2.39 -0.01 1.63 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 33 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.41 16.15 8.01 -92.71 -0.74 15.41 16 35 H 0.43 11.13 6.87 -92.71 -0.64 10.49 16 36 H 0.13 3.94 5.78 -2.91 -0.02 3.92 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.16 1.75 6.29 -2.91 -0.02 1.73 16 39 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 40 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 41 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.49 7.53 -2.39 -0.02 1.47 16 44 H 0.06 1.25 6.98 -2.39 -0.02 1.23 16 Total: -1.00 -63.43 359.56 2.67 -60.77 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.32 Total: 35.47 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.45 Total: 8.88 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.52 Total: -100.40 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.97 Total: -48.44 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.43 2.67 -60.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599968715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.100 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds