Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47424 * 2 1 4 4 N 1.46509 * 109.46623 * 119.99915 * 2 1 3 5 5 C 1.46497 * 119.99962 * 121.38495 * 4 2 1 6 6 C 1.50696 * 109.47196 * 269.99975 * 5 4 2 7 7 H 1.08000 * 119.99865 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99982 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00083 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00015 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47117 * 90.00030 * 10 8 6 12 12 H 1.48495 * 109.47214 * 209.99911 * 10 8 6 13 13 H 1.48496 * 109.46896 * 330.00390 * 10 8 6 14 14 C 1.34776 * 119.99842 * 301.38172 * 4 2 1 15 15 O 1.21581 * 119.99715 * 212.66405 * 14 4 2 16 16 C 1.47599 * 120.00005 * 32.66569 * 14 4 2 17 17 C 1.39735 * 120.08729 * 137.35589 * 16 14 4 18 18 C 1.37705 * 119.90753 * 180.29580 * 17 16 14 19 19 C 1.38994 * 120.08995 * 359.45080 * 18 17 16 20 20 O 1.35714 * 119.91238 * 180.25303 * 19 18 17 21 21 C 1.42906 * 116.99809 * 0.29948 * 20 19 18 22 22 C 1.50702 * 109.46831 * 179.97438 * 21 20 19 23 23 N 1.34775 * 119.99621 * 179.97438 * 22 21 20 24 24 O 1.21276 * 120.00119 * 0.02562 * 22 21 20 25 25 C 1.38993 * 120.17537 * 0.54989 * 19 18 17 26 26 C 1.37706 * 120.09124 * 359.72651 * 25 19 18 27 27 H 1.09003 * 109.47730 * 253.42854 * 1 2 3 28 28 H 1.09004 * 109.46878 * 13.42310 * 1 2 3 29 29 H 1.09000 * 109.47725 * 133.42353 * 1 2 3 30 30 H 1.09000 * 109.47114 * 239.99181 * 2 1 3 31 31 H 1.08999 * 109.46941 * 223.93529 * 3 2 1 32 32 H 1.09006 * 109.46978 * 343.93220 * 3 2 1 33 33 H 1.09002 * 109.47709 * 103.92965 * 3 2 1 34 34 H 1.09002 * 109.47174 * 30.00122 * 5 4 2 35 35 H 1.08994 * 109.47029 * 149.99480 * 5 4 2 36 36 H 0.96994 * 119.99845 * 179.97438 * 9 8 6 37 37 H 1.07996 * 120.04680 * 0.02562 * 17 16 14 38 38 H 1.08005 * 119.95243 * 179.70129 * 18 17 16 39 39 H 1.09002 * 109.46746 * 299.99372 * 21 20 19 40 40 H 1.08999 * 109.47078 * 59.99656 * 21 20 19 41 41 H 0.96998 * 120.00228 * 0.02562 * 23 22 21 42 42 H 0.97006 * 119.99717 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.95177 * 179.70580 * 25 19 18 44 44 H 1.07997 * 120.04480 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1963 5 6 2.8853 -1.8638 1.0622 6 6 2.0390 -3.1090 0.9963 7 1 0.9629 -3.0340 1.0495 8 6 2.6386 -4.3441 0.8692 9 7 1.9001 -5.4308 0.8122 10 14 4.4999 -4.4739 0.7779 11 1 5.0535 -4.6224 2.1479 12 1 4.8742 -5.6567 -0.0381 13 1 5.0515 -3.2456 0.1516 14 6 1.6697 -0.2466 2.4201 15 8 2.4434 -0.3603 3.3511 16 6 0.3488 0.3777 2.6302 17 6 -0.4030 0.0614 3.7648 18 6 -1.6375 0.6413 3.9540 19 6 -2.1310 1.5489 3.0241 20 8 -3.3459 2.1223 3.2168 21 6 -4.0580 1.7516 4.3991 22 6 -5.3748 2.4832 4.4425 23 7 -6.2201 2.2885 5.4739 24 8 -5.6742 3.2464 3.5488 25 6 -1.3862 1.8662 1.8943 26 6 -0.1533 1.2863 1.6948 27 1 -0.3635 -0.2931 0.9850 28 1 -0.3633 0.9996 -0.2386 29 1 -0.3634 -0.7064 -0.7464 30 1 1.8933 -0.5140 -0.8899 31 1 2.8589 1.5382 -0.7130 32 1 1.2301 2.1142 -0.2844 33 1 2.3944 1.7026 0.9974 34 1 3.4756 -1.7770 0.1499 35 1 3.5523 -1.9229 1.9222 36 1 2.3219 -6.2996 0.7224 37 1 -0.0183 -0.6403 4.4901 38 1 -2.2214 0.3937 4.8283 39 1 -4.2392 0.6768 4.3921 40 1 -3.4673 2.0148 5.2765 41 1 -5.9808 1.6778 6.1885 42 1 -7.0676 2.7597 5.5020 43 1 -1.7752 2.5683 1.1717 44 1 0.4246 1.5330 0.8165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = -25.352004 kcal Electronic energy + Delta-G solvation = -27228.579132 eV Core-core repulsion = 23341.989583 eV Total energy + Delta-G solvation = -3886.589549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38490 -41.10944 -39.94094 -38.47695 -37.58033 -35.22314 -34.78582 -33.63003 -32.05466 -31.29090 -29.86220 -29.02224 -27.97517 -25.28859 -24.31390 -23.40036 -22.99364 -21.78437 -19.92164 -19.51168 -19.09556 -18.61373 -17.91413 -17.52645 -17.39201 -17.29812 -16.75164 -16.43553 -16.18492 -15.92501 -15.50214 -15.14613 -14.98208 -14.80932 -14.63947 -14.39100 -14.11202 -14.10323 -13.75218 -13.52907 -13.28740 -13.08695 -12.97542 -12.65384 -12.40667 -12.25764 -12.12068 -11.95829 -11.74238 -11.63206 -11.23350 -11.12009 -10.88484 -10.83713 -10.74813 -9.68323 -9.37274 -9.01796 -8.34752 -6.40252 0.02960 0.40359 1.33085 1.35964 1.45086 1.47497 1.62212 1.66638 2.25722 2.30322 2.75449 2.83192 2.99367 3.63128 3.69756 3.82313 3.85571 3.91202 4.07019 4.10824 4.11742 4.21292 4.28235 4.42601 4.57333 4.64835 4.67736 4.80892 4.86233 4.90322 4.99052 5.02578 5.11910 5.19000 5.26175 5.38172 5.40931 5.49935 5.57150 5.72646 5.82660 6.24131 6.26469 6.41535 6.62329 6.67699 7.12773 7.24757 7.28700 8.81523 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.003027 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.978397 B = 9248.898838 C = 9802.283557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.126 3.874 3 C -0.174 4.174 4 N -0.613 5.613 5 C 0.227 3.773 6 C -0.539 4.539 7 H 0.035 0.965 8 C 0.017 3.983 9 N -0.941 5.941 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.275 1.275 13 H -0.241 1.241 14 C 0.572 3.428 15 O -0.583 6.583 16 C -0.213 4.213 17 C -0.036 4.036 18 C -0.227 4.227 19 C 0.157 3.843 20 O -0.306 6.306 21 C 0.027 3.973 22 C 0.519 3.481 23 N -0.826 5.826 24 O -0.581 6.581 25 C -0.191 4.191 26 C -0.036 4.036 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.269 0.731 37 H 0.117 0.883 38 H 0.164 0.836 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.423 0.577 42 H 0.415 0.585 43 H 0.158 0.842 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 17.253 5.730 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.023 3.977 3 C -0.231 4.231 4 N -0.345 5.345 5 C 0.105 3.895 6 C -0.578 4.578 7 H 0.053 0.947 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.765 3.235 11 H -0.201 1.201 12 H -0.200 1.200 13 H -0.164 1.164 14 C 0.364 3.636 15 O -0.464 6.464 16 C -0.216 4.216 17 C -0.056 4.056 18 C -0.246 4.246 19 C 0.111 3.889 20 O -0.219 6.219 21 C -0.051 4.051 22 C 0.304 3.696 23 N -0.392 5.392 24 O -0.460 6.460 25 C -0.209 4.209 26 C -0.052 4.052 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.182 0.818 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.255 0.745 42 H 0.247 0.753 43 H 0.176 0.824 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.968 17.570 5.414 21.937 hybrid contribution 0.451 -1.396 0.711 1.630 sum -11.517 16.174 6.125 20.779 Atomic orbital electron populations 1.23715 0.94993 1.03682 1.03202 1.21404 0.94796 0.93893 0.87655 1.22680 1.03512 0.94002 1.02945 1.47764 1.51312 1.30032 1.05357 1.19381 0.90137 0.82814 0.97181 1.21603 0.93995 0.91319 1.50838 0.94671 1.25766 1.03552 0.94991 0.93898 1.70033 1.37887 0.98838 1.51334 0.85790 0.79544 0.79262 0.78871 1.20130 1.19974 1.16412 1.18585 0.86292 0.76501 0.82248 1.90642 1.53347 1.58107 1.44300 1.19939 0.96350 1.05424 0.99913 1.20976 0.93624 0.96541 0.94421 1.21225 0.97993 1.02513 1.02826 1.19309 0.84099 0.91121 0.94378 1.86077 1.28295 1.64652 1.42848 1.22844 0.91446 1.01802 0.89028 1.20337 0.86004 0.81321 0.81983 1.43480 1.22047 1.49208 1.24510 1.90791 1.77198 1.38795 1.39188 1.20502 0.95133 1.06169 0.99098 1.22892 0.95730 0.89971 0.96648 0.90468 0.87008 0.92860 0.88651 0.89723 0.87298 0.93166 0.93390 0.96367 0.92210 0.86487 0.81817 0.86029 0.85612 0.74529 0.75250 0.82445 0.78855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.61 7.72 71.98 0.56 -5.05 16 2 C 0.13 3.89 3.27 44.99 0.15 4.03 16 3 C -0.17 -3.88 8.36 71.98 0.60 -3.28 16 4 N -0.61 -25.82 2.38 -805.82 -1.92 -27.74 16 5 C 0.23 11.20 4.39 85.63 0.38 11.58 16 6 C -0.54 -31.31 9.94 25.60 0.25 -31.06 16 7 H 0.03 2.27 8.06 -2.91 -0.02 2.25 16 8 C 0.02 0.96 5.47 84.66 0.46 1.43 16 9 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 10 Si 0.94 44.16 27.47 68.60 1.88 46.04 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 14 C 0.57 24.92 5.84 86.71 0.51 25.42 16 15 O -0.58 -29.70 16.80 -3.97 -0.07 -29.77 16 16 C -0.21 -7.41 4.27 -20.08 -0.09 -7.50 16 17 C -0.04 -1.17 9.65 22.51 0.22 -0.95 16 18 C -0.23 -5.37 9.01 22.32 0.20 -5.16 16 19 C 0.16 3.75 6.70 22.63 0.15 3.90 16 20 O -0.31 -6.94 9.66 -71.31 -0.69 -7.62 16 21 C 0.03 0.35 5.21 71.24 0.37 0.72 16 22 C 0.52 8.33 8.18 87.66 0.72 9.05 16 23 N -0.83 -4.80 8.87 -173.54 -1.54 -6.34 16 24 O -0.58 -16.15 17.34 16.02 0.28 -15.88 16 25 C -0.19 -4.50 9.71 22.32 0.22 -4.28 16 26 C -0.04 -0.95 4.87 22.51 0.11 -0.84 16 27 H 0.08 2.60 4.00 -11.24 -0.04 2.55 16 28 H 0.11 2.17 5.24 -2.38 -0.01 2.15 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 2.95 7.81 -2.39 -0.02 2.93 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.60 6.17 -2.38 -0.01 1.59 16 33 H 0.05 1.32 6.82 -2.39 -0.02 1.30 16 34 H 0.05 2.18 6.99 -2.39 -0.02 2.17 16 35 H 0.02 0.97 6.79 -2.39 -0.02 0.95 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.16 2.51 6.28 -2.91 -0.02 2.49 16 39 H 0.12 1.03 7.64 -2.39 -0.02 1.01 16 40 H 0.13 0.93 7.66 -2.39 -0.02 0.91 16 41 H 0.42 -0.65 8.83 -92.71 -0.82 -1.46 16 42 H 0.41 1.90 8.93 -92.70 -0.83 1.07 16 43 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.20 4.36 1.06 -4.16 0.00 4.35 16 Total: -1.00 -88.39 352.81 2.39 -86.00 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -0.66 Total: 15.55 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.80 Total: -1.98 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -3.16 Total: -92.33 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.48 Total: -53.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -88.39 2.39 -86.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.643 kcal (2) G-P(sol) polarization free energy of solvation -88.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds