Wall clock time and date at job start Tue Mar 31 2020 12:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 H 1.08998 * 109.46695 * 55.00171 * 3 2 1 5 5 C 1.50698 * 109.47000 * 174.99898 * 3 2 1 6 6 H 1.07998 * 120.00129 * 119.99846 * 5 3 2 7 7 C 1.37875 * 120.00341 * 300.00269 * 5 3 2 8 8 N 1.31515 * 119.99872 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00414 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46886 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47342 * 119.99843 * 9 7 5 12 12 H 1.48502 * 109.47526 * 240.00131 * 9 7 5 13 13 N 1.46499 * 109.47152 * 295.00025 * 3 2 1 14 14 C 1.34775 * 119.99934 * 84.99836 * 13 3 2 15 15 O 1.21595 * 119.99952 * 0.02562 * 14 13 3 16 16 N 1.34769 * 119.99995 * 179.97438 * 14 13 3 17 17 C 1.40140 * 120.00094 * 184.64221 * 16 14 13 18 18 C 1.38838 * 119.96896 * 144.93903 * 17 16 14 19 19 C 1.38284 * 120.14621 * 179.97438 * 18 17 16 20 20 C 1.38472 * 119.80479 * 0.02562 * 19 18 17 21 21 C 1.38749 * 120.17535 * 359.97438 * 20 19 18 22 22 C 1.38419 * 120.14679 * 359.75215 * 21 20 19 23 23 O 1.36481 * 119.60736 * 179.97438 * 21 20 19 24 24 C 1.42901 * 115.93394 * 68.30235 * 23 21 20 25 25 C 1.52061 * 110.77260 * 275.55766 * 24 23 21 26 26 C 1.52073 * 112.36842 * 64.80530 * 25 24 23 27 27 O 1.36566 * 120.23702 * 179.97438 * 20 19 18 28 28 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47076 * 299.99664 * 1 2 3 30 30 H 1.09004 * 109.47120 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47076 * 240.00336 * 2 1 3 32 32 H 1.08995 * 109.47176 * 120.00561 * 2 1 3 33 33 H 0.97000 * 120.00288 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99533 * 265.00255 * 13 3 2 35 35 H 0.97004 * 120.00093 * 4.64262 * 16 14 13 36 36 H 1.08000 * 119.92493 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.09467 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.16801 * 180.28314 * 22 21 20 39 39 H 1.09003 * 109.21259 * 35.88658 * 24 23 21 40 40 H 1.08990 * 109.21713 * 155.22212 * 24 23 21 41 41 H 1.09000 * 108.90355 * 185.55022 * 25 24 23 42 42 H 1.09002 * 108.90333 * 304.16199 * 25 24 23 43 43 H 1.09000 * 109.21523 * 55.52888 * 26 25 24 44 44 H 1.08997 * 109.21488 * 174.85570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8799 1.3811 10 1 6.5988 1.5441 0.1931 11 1 6.4000 1.6155 2.6091 12 1 6.4962 -0.5192 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0788 3.2674 -2.5183 17 6 -1.1470 3.9409 -2.6064 18 6 -1.2519 5.0926 -3.3746 19 6 -2.4598 5.7598 -3.4646 20 6 -3.5654 5.2763 -2.7854 21 6 -3.4635 4.1255 -2.0169 22 6 -2.2572 3.4524 -1.9296 23 8 -4.5605 3.6595 -1.3520 24 6 -5.6151 3.1466 -2.1685 25 6 -6.5217 4.2697 -2.6470 26 6 -5.8014 5.2424 -3.5677 27 8 -4.7624 5.9284 -2.8676 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8293 -0.0613 2.9498 34 1 2.2719 2.1231 -1.9977 35 1 0.6708 3.2352 -3.2861 36 1 -0.3884 5.4678 -3.9038 37 1 -2.5405 6.6554 -4.0627 38 1 -2.1786 2.5542 -1.3352 39 1 -5.1855 2.6395 -3.0326 40 1 -6.2022 2.4334 -1.5901 41 1 -7.3673 3.8374 -3.1819 42 1 -6.8943 4.8161 -1.7805 43 1 -5.3681 4.6919 -4.4028 44 1 -6.5168 5.9699 -3.9512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613855708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:18 Heat of formation + Delta-G solvation = -74.362074 kcal Electronic energy + Delta-G solvation = -27254.793676 eV Core-core repulsion = 23366.078890 eV Total energy + Delta-G solvation = -3888.714786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95394 -39.82548 -37.63702 -37.45912 -35.31218 -34.13074 -32.76042 -32.30431 -30.92178 -30.19531 -28.33621 -26.91393 -26.42868 -23.49912 -22.94073 -21.96975 -21.75032 -20.68587 -19.54953 -18.53053 -18.33130 -17.62745 -16.91033 -16.11461 -15.85084 -15.46057 -15.28458 -15.15641 -14.83801 -14.28975 -14.16956 -14.00673 -13.72905 -13.63747 -13.46530 -12.97209 -12.66983 -12.44253 -12.03715 -11.97220 -11.56768 -11.40658 -11.27628 -11.00609 -10.97020 -10.86893 -10.54217 -10.34106 -10.22653 -10.12109 -9.80195 -9.62024 -9.34221 -9.05748 -8.67278 -8.52508 -8.03020 -7.68945 -6.14187 -4.23561 1.09424 1.29315 3.08308 3.22615 3.27100 3.31049 3.33369 3.40844 3.74237 4.03967 4.30924 4.43106 4.52461 4.88090 4.88959 4.93019 5.05242 5.10256 5.14191 5.17776 5.23794 5.33938 5.50677 5.56288 5.75041 5.88063 5.90371 6.27449 6.33713 6.39220 6.43655 6.48732 6.64882 6.95530 6.98490 7.09744 7.09957 7.32448 7.36064 7.43209 7.59123 7.62915 7.84608 7.95601 8.16856 8.70954 8.81785 9.21641 9.44667 10.91249 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.002794 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.800701 B =10018.452524 C =10689.610933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.691 3.309 15 O -0.572 6.572 16 N -0.696 5.696 17 C 0.192 3.808 18 C -0.149 4.149 19 C -0.097 4.097 20 C 0.034 3.966 21 C 0.085 3.915 22 C -0.118 4.118 23 O -0.316 6.316 24 C 0.060 3.940 25 C -0.187 4.187 26 C 0.060 3.940 27 O -0.319 6.319 28 H 0.021 0.979 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 6.621 -15.393 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.449 6.449 16 N -0.344 5.344 17 C 0.095 3.905 18 C -0.170 4.170 19 C -0.116 4.116 20 C -0.010 4.010 21 C 0.041 3.959 22 C -0.139 4.139 23 O -0.232 6.232 24 C -0.015 4.015 25 C -0.225 4.225 26 C -0.016 4.016 27 O -0.236 6.236 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.239 0.761 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.174 0.826 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.528 6.580 -13.982 21.907 hybrid contribution 1.497 -0.215 -0.819 1.720 sum -14.031 6.365 -14.801 21.365 Atomic orbital electron populations 1.21826 0.98305 0.97946 1.01256 1.21959 0.92680 0.99840 1.02260 1.18746 0.94071 0.88888 0.79916 0.93135 1.21245 0.90611 1.39048 1.06344 0.92044 1.24879 0.98633 0.94802 0.95367 1.69903 1.35053 1.37540 1.09323 0.86392 0.84800 0.77755 0.78124 1.19783 1.20866 1.20881 1.45839 1.13080 1.58521 1.19351 1.16138 0.83784 0.78846 0.82097 1.90919 1.51707 1.63919 1.38350 1.42900 1.19303 1.57337 1.14901 1.17351 0.84765 0.91242 0.97158 1.20779 0.98237 0.94174 1.03781 1.20729 0.91568 1.00474 0.98809 1.19051 0.87106 0.94577 1.00302 1.18948 0.88131 0.93224 0.95619 1.21347 0.89738 1.01643 1.01180 1.86412 1.25041 1.79527 1.32200 1.22596 0.88342 0.94967 0.95600 1.22479 0.99865 0.98360 1.01752 1.22584 0.89637 0.96033 0.93307 1.86377 1.18410 1.43479 1.75295 0.95945 0.93036 0.94405 0.95084 0.88220 0.92565 0.78204 0.76122 0.84934 0.84730 0.82586 0.92532 0.87985 0.89458 0.89890 0.92645 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 7.03 2.24 -69.08 -0.15 6.88 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.72 -14.30 5.03 -59.81 -0.30 -14.60 16 14 C 0.69 13.44 6.97 -86.93 -0.61 12.84 16 15 O -0.57 -13.24 10.93 5.28 0.06 -13.18 16 16 N -0.70 -10.23 5.35 -14.18 -0.08 -10.30 16 17 C 0.19 2.83 6.30 -83.59 -0.53 2.31 16 18 C -0.15 -1.77 9.96 -39.34 -0.39 -2.16 16 19 C -0.10 -1.14 10.00 -39.48 -0.39 -1.54 16 20 C 0.03 0.48 5.73 -39.31 -0.23 0.25 16 21 C 0.09 1.33 5.73 -39.33 -0.23 1.10 16 22 C -0.12 -1.96 8.64 -39.27 -0.34 -2.30 16 23 O -0.32 -4.84 10.16 -36.75 -0.37 -5.21 16 24 C 0.06 0.62 6.51 36.68 0.24 0.86 16 25 C -0.19 -1.56 5.93 -27.68 -0.16 -1.72 16 26 C 0.06 0.53 6.51 36.69 0.24 0.77 16 27 O -0.32 -4.15 10.16 -37.03 -0.38 -4.53 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 30 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.39 6.53 8.56 -40.82 -0.35 6.19 16 35 H 0.40 4.40 8.84 -40.82 -0.36 4.04 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 2.99 6.25 -52.49 -0.33 2.66 16 39 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.04 353.81 -9.09 -41.14 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.19 Total: 10.88 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.77 Total: -1.07 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.25 Total: -48.71 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.69 Total: -22.92 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.04 -9.09 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.226 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds