Wall clock time and date at job start Tue Mar 31 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 H 1.08998 * 109.46695 * 55.00171 * 3 2 1 5 5 C 1.50698 * 109.47000 * 174.99898 * 3 2 1 6 6 H 1.07998 * 120.00129 * 119.99846 * 5 3 2 7 7 C 1.37875 * 120.00341 * 300.00269 * 5 3 2 8 8 N 1.31515 * 119.99872 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00414 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46886 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47342 * 119.99843 * 9 7 5 12 12 H 1.48502 * 109.47526 * 240.00131 * 9 7 5 13 13 N 1.46499 * 109.47152 * 295.00025 * 3 2 1 14 14 C 1.34775 * 119.99934 * 84.99836 * 13 3 2 15 15 O 1.21595 * 119.99952 * 0.02562 * 14 13 3 16 16 N 1.34769 * 119.99995 * 179.97438 * 14 13 3 17 17 C 1.40140 * 120.00094 * 184.64221 * 16 14 13 18 18 C 1.38838 * 119.96896 * 144.93903 * 17 16 14 19 19 C 1.38284 * 120.14621 * 179.97438 * 18 17 16 20 20 C 1.38472 * 119.80479 * 0.02562 * 19 18 17 21 21 C 1.38749 * 120.17535 * 359.97438 * 20 19 18 22 22 C 1.38419 * 120.14679 * 359.75215 * 21 20 19 23 23 O 1.36481 * 119.60736 * 179.97438 * 21 20 19 24 24 C 1.42901 * 115.93394 * 68.30235 * 23 21 20 25 25 C 1.52061 * 110.77260 * 275.55766 * 24 23 21 26 26 C 1.52073 * 112.36842 * 64.80530 * 25 24 23 27 27 O 1.36566 * 120.23702 * 179.97438 * 20 19 18 28 28 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47076 * 299.99664 * 1 2 3 30 30 H 1.09004 * 109.47120 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.47076 * 240.00336 * 2 1 3 32 32 H 1.08995 * 109.47176 * 120.00561 * 2 1 3 33 33 H 0.97000 * 120.00288 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99533 * 265.00255 * 13 3 2 35 35 H 0.97004 * 120.00093 * 4.64262 * 16 14 13 36 36 H 1.08000 * 119.92493 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.09467 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.16801 * 180.28314 * 22 21 20 39 39 H 1.09003 * 109.21259 * 35.88658 * 24 23 21 40 40 H 1.08990 * 109.21713 * 155.22212 * 24 23 21 41 41 H 1.09000 * 108.90355 * 185.55022 * 25 24 23 42 42 H 1.09002 * 108.90333 * 304.16199 * 25 24 23 43 43 H 1.09000 * 109.21523 * 55.52888 * 26 25 24 44 44 H 1.08997 * 109.21488 * 174.85570 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8799 1.3811 10 1 6.5988 1.5441 0.1931 11 1 6.4000 1.6155 2.6091 12 1 6.4962 -0.5192 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4316 16 7 0.0788 3.2674 -2.5183 17 6 -1.1470 3.9409 -2.6064 18 6 -1.2519 5.0926 -3.3746 19 6 -2.4598 5.7598 -3.4646 20 6 -3.5654 5.2763 -2.7854 21 6 -3.4635 4.1255 -2.0169 22 6 -2.2572 3.4524 -1.9296 23 8 -4.5605 3.6595 -1.3520 24 6 -5.6151 3.1466 -2.1685 25 6 -6.5217 4.2697 -2.6470 26 6 -5.8014 5.2424 -3.5677 27 8 -4.7624 5.9284 -2.8676 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8293 -0.0613 2.9498 34 1 2.2719 2.1231 -1.9977 35 1 0.6708 3.2352 -3.2861 36 1 -0.3884 5.4678 -3.9038 37 1 -2.5405 6.6554 -4.0627 38 1 -2.1786 2.5542 -1.3352 39 1 -5.1855 2.6395 -3.0326 40 1 -6.2022 2.4334 -1.5901 41 1 -7.3673 3.8374 -3.1819 42 1 -6.8943 4.8161 -1.7805 43 1 -5.3681 4.6919 -4.4028 44 1 -6.5168 5.9699 -3.9512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613855708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:16 Heat of formation + Delta-G solvation = -96.403588 kcal Electronic energy + Delta-G solvation = -27255.749468 eV Core-core repulsion = 23366.078890 eV Total energy + Delta-G solvation = -3889.670577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03272 -41.19502 -38.84419 -38.43995 -37.00384 -35.47827 -34.31810 -33.54246 -32.64026 -31.31445 -29.61151 -28.58873 -27.36484 -25.15682 -24.28838 -23.17102 -22.55743 -22.14573 -21.36196 -19.87256 -19.53510 -18.76454 -18.12917 -17.62900 -17.22097 -16.81513 -16.47011 -16.34264 -16.22734 -15.81124 -15.22626 -15.10084 -14.94060 -14.89475 -14.62948 -14.45334 -13.96816 -13.82859 -13.56819 -13.18735 -13.13338 -12.96777 -12.84484 -12.70099 -12.25544 -12.16325 -12.05050 -11.82899 -11.60033 -11.36882 -11.20611 -11.11455 -11.02890 -10.72357 -10.52932 -9.79494 -9.67924 -8.90664 -8.15284 -6.32294 0.04835 0.23291 1.45294 1.46249 1.57744 1.75398 2.12472 2.40740 2.45092 2.53594 2.92414 3.14731 3.49112 3.73703 3.77718 3.94920 4.18138 4.22045 4.28641 4.35168 4.39254 4.42789 4.49749 4.57110 4.67730 4.75695 4.78127 4.83064 4.97326 5.06187 5.09306 5.19869 5.27675 5.32829 5.35691 5.45351 5.54513 5.62216 5.75862 5.79424 5.88025 6.16537 6.18383 6.28880 6.59687 6.76287 7.26575 7.36298 7.72555 8.90515 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.002794 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.800701 B =10018.452524 C =10689.610933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.296 3.704 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.712 5.712 14 C 0.690 3.310 15 O -0.613 6.613 16 N -0.675 5.675 17 C 0.171 3.829 18 C -0.128 4.128 19 C -0.089 4.089 20 C 0.034 3.966 21 C 0.069 3.931 22 C -0.144 4.144 23 O -0.349 6.349 24 C 0.048 3.952 25 C -0.181 4.181 26 C 0.051 3.949 27 O -0.336 6.336 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 8.064 -18.567 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.365 5.365 14 C 0.391 3.609 15 O -0.493 6.493 16 N -0.325 5.325 17 C 0.075 3.925 18 C -0.149 4.149 19 C -0.107 4.107 20 C -0.011 4.011 21 C 0.024 3.976 22 C -0.165 4.165 23 O -0.266 6.266 24 C -0.026 4.026 25 C -0.219 4.219 26 C -0.024 4.024 27 O -0.254 6.254 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.264 0.736 36 H 0.189 0.811 37 H 0.187 0.813 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.343 8.047 -17.244 24.444 hybrid contribution 1.249 -0.616 0.137 1.400 sum -14.093 7.431 -17.107 23.377 Atomic orbital electron populations 1.21645 0.97194 0.98854 1.00086 1.21802 0.93523 0.99285 1.01369 1.18274 0.93525 0.88775 0.80197 0.98494 1.21589 0.91227 1.38788 1.06717 0.90795 1.25770 1.03298 0.94435 0.95045 1.70062 1.37010 1.38408 1.09898 0.85310 0.79119 0.77771 0.78190 1.18288 1.21233 1.20508 1.45412 1.13862 1.58690 1.18531 1.16229 0.83063 0.78746 0.82863 1.90915 1.52761 1.65250 1.40392 1.42483 1.19699 1.56309 1.13976 1.17546 0.83894 0.92646 0.98396 1.21113 0.99524 0.92244 1.02015 1.21131 0.90500 1.01030 0.98073 1.19246 0.88366 0.93685 0.99802 1.19103 0.87869 0.94242 0.96367 1.21169 0.91533 1.01411 1.02426 1.86341 1.26027 1.80000 1.34274 1.22931 0.87745 0.96226 0.95703 1.22463 1.00241 0.97521 1.01657 1.22926 0.89167 0.96981 0.93283 1.86336 1.18805 1.44121 1.76094 0.93807 0.95828 0.93960 0.93841 0.90975 0.92632 0.76166 0.73646 0.81133 0.81285 0.86322 0.92022 0.86727 0.85853 0.91023 0.91589 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.30 15.06 2.24 44.25 0.10 15.16 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.54 -28.36 8.73 25.60 0.22 -28.14 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.71 -28.64 5.03 -461.41 -2.32 -30.96 16 14 C 0.69 27.43 6.97 179.06 1.25 28.68 16 15 O -0.61 -30.06 10.93 -4.02 -0.04 -30.10 16 16 N -0.67 -19.30 5.35 -317.03 -1.70 -20.99 16 17 C 0.17 4.95 6.30 38.11 0.24 5.19 16 18 C -0.13 -2.67 9.96 22.42 0.22 -2.44 16 19 C -0.09 -1.82 10.00 22.34 0.22 -1.60 16 20 C 0.03 0.89 5.73 22.45 0.13 1.02 16 21 C 0.07 2.19 5.73 22.44 0.13 2.32 16 22 C -0.14 -5.02 8.64 22.47 0.19 -4.82 16 23 O -0.35 -11.20 10.16 -84.31 -0.86 -12.06 16 24 C 0.05 0.99 6.51 71.67 0.47 1.46 16 25 C -0.18 -2.71 5.93 29.98 0.18 -2.54 16 26 C 0.05 0.78 6.51 71.68 0.47 1.24 16 27 O -0.34 -8.15 10.16 -85.32 -0.87 -9.02 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.02 1.17 7.84 -2.39 -0.02 1.15 16 30 H 0.04 1.88 5.65 -2.38 -0.01 1.87 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.40 13.22 8.56 -92.71 -0.79 12.42 16 35 H 0.42 8.31 8.84 -92.71 -0.82 7.49 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.12 4.98 6.25 -2.91 -0.02 4.97 16 39 H 0.06 1.18 7.93 -2.39 -0.02 1.16 16 40 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 0.88 7.93 -2.39 -0.02 0.86 16 44 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.51 353.81 0.97 -73.54 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.57 Total: 31.87 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.05 Total: 6.06 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.77 Total: -104.05 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.77 Total: -51.18 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -74.51 0.97 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613855708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.861 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds