Wall clock time and date at job start Tue Mar 31 2020 12:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39007 * 119.99879 * 89.99973 * 4 3 2 7 7 C 1.39236 * 119.92809 * 359.72255 * 6 4 3 8 8 C 1.37110 * 120.07311 * 179.76599 * 7 6 4 9 9 C 1.39865 * 119.92350 * 0.50627 * 8 7 6 10 10 C 1.47376 * 120.07300 * 179.72079 * 9 8 7 11 11 O 1.21516 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34765 * 120.00093 * 0.02562 * 10 9 8 13 13 C 1.45196 * 117.00301 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47570 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99642 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00322 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00317 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99754 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00247 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00173 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47051 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46824 * 119.99887 * 21 19 17 24 24 H 1.48494 * 109.47642 * 240.00026 * 21 19 17 25 25 C 1.39851 * 119.85104 * 359.74542 * 9 8 7 26 26 C 1.37105 * 119.92835 * 359.97438 * 25 9 8 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 31 31 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 35 35 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 36 36 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 37 37 H 1.07996 * 119.95967 * 359.97438 * 7 6 4 38 38 H 1.07997 * 120.03961 * 180.22938 * 8 7 6 39 39 H 1.09001 * 109.47335 * 300.00103 * 13 12 10 40 40 H 1.09005 * 109.47117 * 59.99968 * 13 12 10 41 41 H 0.97000 * 119.99982 * 359.97438 * 16 14 13 42 42 H 0.96999 * 120.00168 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.03417 * 179.97438 * 25 9 8 44 44 H 1.08003 * 119.96537 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1995 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4094 8 6 4.1833 1.4420 -3.5988 9 6 5.5820 1.4420 -3.6012 10 6 6.3183 1.4411 -4.8778 11 8 7.5335 1.4407 -4.8783 12 8 5.6441 1.4408 -6.0446 13 6 6.4344 1.4405 -7.2627 14 6 5.5159 1.4408 -8.4575 15 8 4.3136 1.4408 -8.2980 16 7 6.0306 1.4401 -9.7030 17 6 5.1950 1.4409 -10.7900 18 1 4.1244 1.4417 -10.6481 19 6 5.7256 1.4407 -12.0742 20 7 7.0283 1.4403 -12.2469 21 14 4.5872 1.4411 -13.5552 22 1 3.1755 1.4422 -13.0943 23 1 4.8410 2.6536 -14.3742 24 1 4.8400 0.2286 -14.3743 25 6 6.2801 1.4424 -2.3894 26 6 5.5920 1.4432 -1.2035 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.4198 0.4147 1.5823 35 1 5.1903 1.9563 1.1372 36 1 3.6492 1.9562 2.0277 37 1 2.4214 1.4321 -2.4068 38 1 3.6412 1.4413 -4.5329 39 1 7.0632 2.3305 -7.2880 40 1 7.0632 0.5505 -7.2876 41 1 6.9921 1.4398 -9.8305 42 1 7.3987 1.4397 -13.1434 43 1 7.3601 1.4420 -2.3877 44 1 6.1305 1.4431 -0.2673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:53 Heat of formation + Delta-G solvation = -92.513359 kcal Electronic energy + Delta-G solvation = -25577.108295 eV Core-core repulsion = 21687.606411 eV Total energy + Delta-G solvation = -3889.501884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.43021 -39.56629 -38.06840 -36.93103 -35.83103 -33.95002 -33.85023 -31.34270 -31.29232 -30.51685 -28.22755 -27.92678 -25.73087 -24.52419 -22.96083 -22.33078 -21.64174 -20.26727 -19.49846 -18.20309 -18.00513 -17.30613 -16.52052 -16.11543 -15.99214 -15.55440 -15.28322 -15.15748 -14.67591 -14.41633 -14.14851 -13.96185 -13.91362 -13.72457 -13.44282 -13.16468 -12.79903 -12.64001 -12.49023 -12.29180 -12.16335 -12.05536 -11.84902 -11.75473 -11.58627 -11.16627 -11.11941 -10.88631 -10.35948 -10.30895 -10.27632 -10.22300 -10.09353 -9.57232 -9.15574 -8.45912 -8.03630 -7.62429 -6.45791 -3.87576 0.88846 1.36201 2.68105 2.76436 2.90530 3.14795 3.26441 3.34281 3.78981 3.85456 4.16168 4.38326 4.48717 4.59026 4.74885 4.78391 4.80473 4.89312 4.97877 5.04968 5.13471 5.19932 5.20041 5.26214 5.30688 5.35827 5.40327 5.45994 5.61252 5.63565 5.69678 5.79463 5.84505 5.95497 6.02184 6.10350 6.20670 6.41547 6.58037 6.78136 6.87093 7.13392 7.51966 7.96036 8.10427 8.53818 9.11667 9.44668 9.94802 10.71645 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.002180 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.785022 B =12838.643657 C =14099.343364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.118 3.882 4 N -0.625 5.625 5 C 0.089 3.911 6 C 0.247 3.753 7 C -0.213 4.213 8 C -0.006 4.006 9 C -0.185 4.185 10 C 0.509 3.491 11 O -0.523 6.523 12 O -0.324 6.324 13 C 0.062 3.938 14 C 0.441 3.559 15 O -0.576 6.576 16 N -0.555 5.555 17 C -0.300 4.300 18 H 0.106 0.894 19 C 0.023 3.977 20 N -0.898 5.898 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.004 4.004 26 C -0.216 4.216 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.395 0.605 42 H 0.273 0.727 43 H 0.135 0.865 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -0.504 27.654 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.005 4.005 4 N -0.333 5.333 5 C -0.054 4.054 6 C 0.143 3.857 7 C -0.236 4.236 8 C -0.025 4.025 9 C -0.188 4.188 10 C 0.355 3.645 11 O -0.414 6.414 12 O -0.239 6.239 13 C -0.016 4.016 14 C 0.225 3.775 15 O -0.460 6.460 16 N -0.192 5.192 17 C -0.429 4.429 18 H 0.124 0.876 19 C -0.179 4.179 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.023 4.023 26 C -0.238 4.238 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.588 -0.492 27.735 28.511 hybrid contribution 0.366 -0.053 -0.889 0.963 sum -6.222 -0.546 26.846 27.563 Atomic orbital electron populations 1.21711 0.95050 1.02174 1.01977 1.21985 0.96166 0.97366 1.02883 1.21619 0.78873 0.96890 1.03089 1.46461 1.05094 1.78444 1.03307 1.21711 0.97411 1.01435 0.84838 1.18095 0.91311 0.90445 0.85838 1.20557 1.00075 1.12294 0.90626 1.21262 0.92861 0.89712 0.98676 1.18862 0.93571 1.16141 0.90210 1.21156 0.86021 0.72603 0.84717 1.90797 1.14852 1.47419 1.88365 1.86590 1.40124 1.83388 1.13774 1.22712 0.93498 1.03467 0.81924 1.19347 0.88819 0.85679 0.83615 1.90550 1.14922 1.55160 1.85369 1.41713 1.09854 1.64009 1.03632 1.19767 0.92052 1.47921 0.83203 0.87592 1.25311 0.96407 0.97039 0.99130 1.69624 1.10561 1.49937 1.23722 0.85747 0.80113 0.77759 0.80402 1.19113 1.20665 1.20660 1.20844 1.00292 0.91090 0.90073 1.20441 0.91848 1.13052 0.98482 0.92308 0.92351 0.92718 0.91257 0.91900 0.90144 0.90674 0.93136 0.90971 0.91411 0.85257 0.83872 0.89595 0.89588 0.77155 0.91732 0.84686 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.15 -0.88 6.26 -26.73 -0.17 -1.04 16 3 C 0.12 0.71 5.18 -4.04 -0.02 0.69 16 4 N -0.62 -4.68 2.99 -179.62 -0.54 -5.22 16 5 C 0.09 0.46 10.22 59.85 0.61 1.07 16 6 C 0.25 2.47 6.55 -83.86 -0.55 1.92 16 7 C -0.21 -2.33 9.16 -39.62 -0.36 -2.70 16 8 C -0.01 -0.08 9.58 -39.38 -0.38 -0.46 16 9 C -0.18 -2.72 5.88 -104.97 -0.62 -3.33 16 10 C 0.51 9.09 7.89 34.45 0.27 9.36 16 11 O -0.52 -10.06 16.13 -19.28 -0.31 -10.37 16 12 O -0.32 -6.47 8.99 -47.35 -0.43 -6.89 16 13 C 0.06 1.24 5.95 36.01 0.21 1.45 16 14 C 0.44 10.91 7.86 -10.99 -0.09 10.82 16 15 O -0.58 -16.24 16.08 -14.11 -0.23 -16.47 16 16 N -0.55 -14.33 5.29 -10.97 -0.06 -14.39 16 17 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 18 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 21 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.00 -0.05 9.56 -39.39 -0.38 -0.43 16 26 C -0.22 -2.19 9.16 -39.62 -0.36 -2.55 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.51 6.18 -51.93 -0.32 0.19 16 33 H 0.07 0.34 7.89 -51.93 -0.41 -0.07 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.35 6.17 -51.93 -0.32 0.03 16 36 H 0.07 0.25 7.89 -51.93 -0.41 -0.16 16 37 H 0.13 1.18 6.12 -52.49 -0.32 0.86 16 38 H 0.14 2.02 7.60 -52.49 -0.40 1.62 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.14 1.59 7.64 -52.48 -0.40 1.19 16 44 H 0.13 0.99 6.11 -52.48 -0.32 0.67 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -33.41 375.83 -8.01 -41.42 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.12 Total: 7.65 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.70 Total: 6.39 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.13 Total: -43.32 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.96 Total: -33.74 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.41 -8.01 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.097 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds