Wall clock time and date at job start Tue Mar 31 2020 12:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46834 * 2 1 4 4 H 1.09000 * 109.47774 * 305.00167 * 3 2 1 5 5 N 1.46507 * 109.47244 * 65.00040 * 3 2 1 6 6 C 1.39673 * 119.99644 * 274.99881 * 5 3 2 7 7 C 1.38918 * 120.07035 * 179.97438 * 6 5 3 8 8 C 1.38103 * 119.92232 * 180.27899 * 7 6 5 9 9 C 1.38289 * 120.07411 * 359.50929 * 8 7 6 10 10 C 1.38281 * 120.14983 * 0.47107 * 9 8 7 11 11 C 1.38102 * 120.07722 * 359.78374 * 10 9 8 12 12 C 1.50698 * 109.47226 * 184.99953 * 3 2 1 13 13 O 1.20833 * 120.00082 * 240.00080 * 12 3 2 14 14 O 1.34231 * 120.00167 * 60.00019 * 12 3 2 15 15 C 1.45198 * 117.00164 * 180.02562 * 14 12 3 16 16 C 1.50695 * 109.47157 * 180.02562 * 15 14 12 17 17 O 1.21282 * 119.99906 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00384 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00336 * 179.97438 * 18 16 15 20 20 C 1.50692 * 109.47135 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99918 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00113 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47147 * 89.99316 * 24 22 20 26 26 H 1.48497 * 109.47106 * 209.99630 * 24 22 20 27 27 H 1.48505 * 109.46964 * 329.99893 * 24 22 20 28 28 H 1.08995 * 109.47119 * 300.00102 * 1 2 3 29 29 H 1.09003 * 109.47095 * 59.99989 * 1 2 3 30 30 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47323 * 240.00412 * 2 1 3 32 32 H 1.08997 * 109.47401 * 119.99685 * 2 1 3 33 33 H 0.97003 * 119.99776 * 95.00082 * 5 3 2 34 34 H 1.08002 * 120.03585 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.96426 * 179.72368 * 8 7 6 36 36 H 1.07993 * 119.92212 * 180.21091 * 9 8 7 37 37 H 1.07998 * 119.96120 * 179.76664 * 10 9 8 38 38 H 1.08001 * 120.04035 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.47484 * 300.00012 * 15 14 12 40 40 H 1.08995 * 109.47109 * 59.99774 * 15 14 12 41 41 H 0.96992 * 119.99511 * 359.97438 * 18 16 15 42 42 H 1.09000 * 109.46972 * 300.00199 * 19 18 16 43 43 H 1.09004 * 109.46908 * 59.99332 * 19 18 16 44 44 H 0.97002 * 120.00060 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.3908 2.6850 1.3711 7 6 0.0215 3.3060 2.5576 8 6 -1.2288 3.8808 2.6741 9 6 -2.1089 3.8476 1.6080 10 6 -1.7443 3.2306 0.4254 11 6 -0.4975 2.6492 0.3038 12 6 3.5419 1.4444 -0.1238 13 8 4.2190 1.9419 0.7445 14 8 4.1274 0.8935 -1.1987 15 6 5.5780 0.9309 -1.2509 16 6 6.0521 0.2713 -2.5202 17 8 5.2468 -0.1857 -3.3035 18 7 7.3711 0.1884 -2.7846 19 6 7.8321 -0.4533 -4.0182 20 6 9.3375 -0.4144 -4.0725 21 1 9.8952 0.0430 -3.2686 22 6 10.0030 -0.9618 -5.1489 23 7 9.3239 -1.5183 -6.1280 24 14 11.8691 -0.9129 -5.2165 25 1 12.4199 -2.1325 -4.5726 26 1 12.3118 -0.8580 -6.6329 27 1 12.3591 0.2905 -4.4975 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2719 2.1232 1.9978 34 1 0.7096 3.3349 3.3896 35 1 -1.5183 4.3599 3.5977 36 1 -3.0847 4.3008 1.7006 37 1 -2.4355 3.2031 -0.4040 38 1 -0.2136 2.1671 -0.6200 39 1 5.9157 1.9671 -1.2324 40 1 5.9863 0.4003 -0.3909 41 1 8.0152 0.5536 -2.1580 42 1 7.4941 -1.4894 -4.0370 43 1 7.4239 0.0776 -4.8783 44 1 9.7921 -1.9038 -6.8851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733505288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:06 Heat of formation + Delta-G solvation = -111.694823 kcal Electronic energy + Delta-G solvation = -25769.229240 eV Core-core repulsion = 21878.895585 eV Total energy + Delta-G solvation = -3890.333655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.08034 -40.69092 -40.19859 -37.94270 -37.12711 -36.19821 -34.42970 -33.73968 -31.66344 -31.07898 -30.43252 -28.73081 -27.32957 -24.68062 -24.03033 -23.26253 -22.79961 -21.67532 -21.22482 -19.50600 -19.22266 -18.26088 -18.01889 -17.87509 -17.36879 -17.00593 -16.71296 -16.52020 -16.20072 -15.87747 -15.64804 -15.02226 -14.80762 -14.54813 -14.52561 -14.26014 -14.10253 -13.96667 -13.78414 -13.70905 -13.38140 -13.07562 -12.94950 -12.72728 -12.51376 -12.24078 -12.20840 -12.05239 -11.97867 -11.72548 -11.50949 -11.46127 -11.09319 -10.93103 -10.82610 -9.94391 -9.71162 -8.36974 -8.30425 -6.46984 0.60599 0.72808 0.86999 1.03437 1.44103 1.45584 1.53246 1.56996 2.24040 2.38299 2.55085 3.04910 3.05764 3.38351 3.67690 3.75983 3.79612 3.99636 4.01423 4.09827 4.19177 4.31638 4.42677 4.45880 4.67083 4.69374 4.76817 4.88320 5.02117 5.07419 5.12073 5.12756 5.21214 5.22180 5.38589 5.40506 5.43979 5.61440 5.66855 5.81303 5.82366 5.94145 6.30222 6.42300 6.61867 6.69976 6.76105 7.19308 7.34091 8.81521 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.001917 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.829984 B =14604.215671 C =14965.969131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.172 3.828 4 H 0.128 0.872 5 N -0.732 5.732 6 C 0.206 3.794 7 C -0.204 4.204 8 C -0.082 4.082 9 C -0.185 4.185 10 C -0.083 4.083 11 C -0.207 4.207 12 C 0.463 3.537 13 O -0.519 6.519 14 O -0.339 6.339 15 C 0.060 3.940 16 C 0.500 3.500 17 O -0.581 6.581 18 N -0.699 5.699 19 C 0.266 3.734 20 C -0.558 4.558 21 H 0.086 0.914 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.984 3.016 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.256 1.256 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.412 0.588 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.968 9.537 18.682 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.064 3.936 4 H 0.146 0.854 5 N -0.365 5.365 6 C 0.104 3.896 7 C -0.227 4.227 8 C -0.100 4.100 9 C -0.205 4.205 10 C -0.102 4.102 11 C -0.229 4.229 12 C 0.306 3.694 13 O -0.407 6.407 14 O -0.253 6.253 15 C -0.017 4.017 16 C 0.285 3.715 17 O -0.462 6.462 18 N -0.350 5.350 19 C 0.144 3.856 20 C -0.596 4.596 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.567 5.567 24 Si 0.808 3.192 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.180 1.180 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.231 9.183 18.010 28.600 hybrid contribution 1.673 -0.091 0.068 1.677 sum -18.558 9.092 18.078 27.457 Atomic orbital electron populations 1.22103 0.93146 1.02666 1.02756 1.21996 0.98479 0.92892 1.03707 1.20398 0.85052 0.97321 0.90822 0.85434 1.44363 1.15204 1.62486 1.14452 1.17879 0.84820 0.92227 0.94637 1.20783 0.99063 1.05601 0.97220 1.21145 0.92624 0.97025 0.99250 1.21217 1.01074 1.04121 0.94067 1.21177 0.95568 0.95296 0.98134 1.21164 0.95472 1.07203 0.99042 1.24191 0.92764 0.73730 0.78719 1.90658 1.65915 1.43168 1.40993 1.86542 1.22744 1.72368 1.43657 1.22782 0.77924 1.04289 0.96706 1.20644 0.83020 0.80029 0.87761 1.90693 1.54913 1.49695 1.50854 1.46044 1.05958 1.58664 1.24357 1.18630 0.94531 0.91117 0.81313 1.21612 0.90826 1.39878 1.07258 0.89624 1.26039 1.04862 0.94015 0.94580 1.70125 1.38382 1.38241 1.09986 0.85160 0.77384 0.79235 0.77456 1.19654 1.21030 1.17986 0.91767 0.91181 0.91840 0.89934 0.91096 0.75544 0.85635 0.84490 0.84896 0.84513 0.84747 0.85806 0.85644 0.75148 0.98872 0.98899 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.22 71.98 0.59 -1.54 16 2 C -0.13 -2.23 5.57 30.60 0.17 -2.06 16 3 C 0.17 3.15 2.73 44.24 0.12 3.27 16 4 H 0.13 2.12 6.48 -2.39 -0.02 2.10 16 5 N -0.73 -12.79 5.06 -322.49 -1.63 -14.43 16 6 C 0.21 3.52 5.49 38.22 0.21 3.73 16 7 C -0.20 -3.26 9.90 22.40 0.22 -3.04 16 8 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 9 C -0.18 -2.50 10.04 22.29 0.22 -2.27 16 10 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 11 C -0.21 -3.24 6.72 22.40 0.15 -3.09 16 12 C 0.46 11.02 7.32 71.24 0.52 11.54 16 13 O -0.52 -13.67 15.59 21.94 0.34 -13.33 16 14 O -0.34 -9.56 9.56 -45.08 -0.43 -9.99 16 15 C 0.06 1.62 5.94 71.23 0.42 2.05 16 16 C 0.50 19.32 7.91 87.65 0.69 20.01 16 17 O -0.58 -28.29 16.50 15.76 0.26 -28.03 16 18 N -0.70 -28.09 5.55 -466.80 -2.59 -30.68 16 19 C 0.27 14.15 5.43 85.63 0.46 14.62 16 20 C -0.56 -29.48 9.28 25.60 0.24 -29.25 16 21 H 0.09 4.06 7.60 -2.91 -0.02 4.03 16 22 C 0.00 0.27 5.46 84.66 0.46 0.73 16 23 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16 24 Si 0.98 41.47 29.54 68.60 2.03 43.50 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 28 H 0.06 0.99 5.39 -2.39 -0.01 0.97 16 29 H 0.07 0.88 6.35 -2.39 -0.02 0.87 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.56 7.99 -2.39 -0.02 1.54 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.41 7.27 7.81 -92.71 -0.72 6.55 16 34 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.13 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.13 1.88 4.01 -2.91 -0.01 1.87 16 39 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 40 H 0.13 2.78 8.13 -2.39 -0.02 2.76 16 41 H 0.41 13.28 8.32 -92.71 -0.77 12.51 16 42 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -71.57 369.81 2.75 -68.83 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.45 Total: 25.93 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.94 Total: 12.85 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.94 Total: -99.77 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: 0.17 Total: -51.35 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -71.57 2.75 -68.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733505288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.869 kcal (2) G-P(sol) polarization free energy of solvation -71.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds