Wall clock time and date at job start Tue Mar 31 2020 12:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47156 * 2 1 4 4 H 1.09008 * 109.46767 * 54.71062 * 3 2 1 5 5 N 1.46501 * 109.47284 * 294.71412 * 3 2 1 6 6 C 1.39669 * 120.00379 * 153.18550 * 5 3 2 7 7 C 1.38913 * 120.07302 * 6.11383 * 6 5 3 8 8 C 1.38101 * 119.92562 * 179.76712 * 7 6 5 9 9 C 1.38284 * 120.07244 * 0.50491 * 8 7 6 10 10 C 1.38280 * 120.15354 * 359.74640 * 9 8 7 11 11 C 1.38107 * 120.07298 * 359.97438 * 10 9 8 12 12 C 1.50693 * 109.47209 * 174.71032 * 3 2 1 13 13 O 1.20827 * 119.99748 * 120.00497 * 12 3 2 14 14 O 1.34224 * 120.00355 * 299.99777 * 12 3 2 15 15 C 1.45201 * 117.00285 * 179.97438 * 14 12 3 16 16 C 1.50706 * 109.47359 * 180.02562 * 15 14 12 17 17 O 1.21277 * 119.99517 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00106 * 180.02562 * 16 15 14 19 19 C 1.46499 * 119.99897 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47041 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00018 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00013 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47450 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47187 * 120.00380 * 24 22 20 27 27 H 1.48504 * 109.47196 * 240.00143 * 24 22 20 28 28 H 1.09007 * 109.47126 * 175.26604 * 1 2 3 29 29 H 1.08998 * 109.47017 * 295.25966 * 1 2 3 30 30 H 1.08997 * 109.47370 * 55.26163 * 1 2 3 31 31 H 1.09000 * 109.47095 * 240.00314 * 2 1 3 32 32 H 1.09002 * 109.47390 * 120.00179 * 2 1 3 33 33 H 0.97007 * 119.99515 * 333.18775 * 5 3 2 34 34 H 1.08006 * 120.03655 * 359.97438 * 7 6 5 35 35 H 1.08004 * 119.96372 * 180.25285 * 8 7 6 36 36 H 1.08010 * 119.92391 * 179.72402 * 9 8 7 37 37 H 1.07998 * 119.96548 * 179.97438 * 10 9 8 38 38 H 1.08002 * 120.03908 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47509 * 300.00254 * 15 14 12 40 40 H 1.09004 * 109.46920 * 60.00910 * 15 14 12 41 41 H 0.97001 * 120.00295 * 359.97438 * 18 16 15 42 42 H 1.08997 * 109.47035 * 299.99533 * 19 18 16 43 43 H 1.08993 * 109.47144 * 60.00378 * 19 18 16 44 44 H 0.96999 * 120.00434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6013 1.9830 0.8389 5 7 1.6583 2.0955 -1.2547 6 6 1.4902 3.4813 -1.2979 7 6 1.8064 4.2558 -0.1889 8 6 1.6435 5.6263 -0.2365 9 6 1.1563 6.2268 -1.3829 10 6 0.8356 5.4584 -2.4869 11 6 1.0015 4.0879 -2.4480 12 6 3.5412 1.4446 0.1310 13 8 4.2225 1.9406 -0.7349 14 8 4.1216 0.8955 1.2096 15 6 5.5719 0.9329 1.2686 16 6 6.0401 0.2744 2.5407 17 8 5.2311 -0.1820 3.3205 18 7 7.3577 0.1926 2.8118 19 6 7.8128 -0.4481 4.0481 20 6 9.3181 -0.4091 4.1095 21 1 9.8796 0.0476 3.3078 22 6 9.9784 -0.9557 5.1894 23 7 9.2947 -1.5113 6.1658 24 14 11.8442 -0.9067 5.2657 25 1 12.3718 -0.2313 4.0530 26 1 12.2707 -0.1569 6.4745 27 1 12.3735 -2.2927 5.3307 28 1 -0.3634 -1.0242 -0.0848 29 1 -0.3633 0.4385 0.9294 30 1 -0.3634 0.5856 -0.8445 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5224 1.5652 -2.0556 34 1 2.1825 3.7869 0.7085 35 1 1.8931 6.2295 0.6240 36 1 1.0257 7.2984 -1.4160 37 1 0.4549 5.9304 -3.3806 38 1 0.7504 3.4882 -3.3105 39 1 5.9844 0.4008 0.4114 40 1 5.9097 1.9692 1.2500 41 1 8.0048 0.5573 2.1879 42 1 7.4001 0.0830 4.9058 43 1 7.4756 -1.4844 4.0657 44 1 9.7592 -1.8955 6.9257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733505290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:12 Heat of formation + Delta-G solvation = -120.308138 kcal Electronic energy + Delta-G solvation = -25911.153096 eV Core-core repulsion = 22020.445940 eV Total energy + Delta-G solvation = -3890.707156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97040 -40.61250 -40.05192 -37.89875 -37.10602 -36.19911 -34.43324 -33.91717 -31.78712 -31.00380 -29.96637 -28.82744 -27.57987 -24.69337 -23.89321 -23.17149 -22.84178 -21.67227 -21.42068 -19.31432 -19.05375 -18.57318 -18.02431 -17.74255 -17.17450 -17.13018 -16.90105 -16.51633 -16.20780 -15.95039 -15.39635 -14.94625 -14.78693 -14.54428 -14.42482 -14.24146 -14.19270 -14.00418 -13.91839 -13.72306 -13.38236 -13.03931 -12.92713 -12.76772 -12.36998 -12.23976 -12.16010 -11.99198 -11.92329 -11.90139 -11.73370 -11.48405 -11.13309 -10.89950 -10.84351 -9.95015 -9.81675 -8.47294 -8.30977 -6.47412 0.54383 0.65636 1.00034 1.20313 1.43793 1.43993 1.52728 1.57734 2.24816 2.36473 2.56462 3.02202 3.04315 3.48215 3.63384 3.72865 3.82718 3.99648 4.00638 4.05838 4.11685 4.31102 4.39197 4.47249 4.62602 4.65939 4.74710 4.81743 5.04769 5.06860 5.13872 5.16330 5.20592 5.20873 5.36392 5.38158 5.40219 5.60929 5.61240 5.75921 5.80823 5.87315 6.27858 6.55203 6.61684 6.71560 6.76211 7.18646 7.33321 8.81271 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002204 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.623376 B =12699.896272 C =13517.502800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.174 3.826 4 H 0.126 0.874 5 N -0.714 5.714 6 C 0.205 3.795 7 C -0.215 4.215 8 C -0.085 4.085 9 C -0.185 4.185 10 C -0.079 4.079 11 C -0.195 4.195 12 C 0.438 3.562 13 O -0.518 6.518 14 O -0.344 6.344 15 C 0.059 3.941 16 C 0.501 3.499 17 O -0.580 6.580 18 N -0.699 5.699 19 C 0.266 3.734 20 C -0.556 4.556 21 H 0.085 0.915 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.985 3.015 25 H -0.254 1.254 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.412 0.588 42 H -0.007 1.007 43 H -0.006 1.006 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.482 10.742 -19.562 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.064 3.936 4 H 0.143 0.857 5 N -0.345 5.345 6 C 0.103 3.897 7 C -0.238 4.238 8 C -0.104 4.104 9 C -0.204 4.204 10 C -0.097 4.097 11 C -0.217 4.217 12 C 0.279 3.721 13 O -0.406 6.406 14 O -0.259 6.259 15 C -0.018 4.018 16 C 0.286 3.714 17 O -0.461 6.461 18 N -0.351 5.351 19 C 0.144 3.856 20 C -0.594 4.594 21 H 0.103 0.897 22 C -0.196 4.196 23 N -0.568 5.568 24 Si 0.808 3.192 25 H -0.177 1.177 26 H -0.205 1.205 27 H -0.204 1.204 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.251 0.749 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.248 0.752 42 H 0.011 0.989 43 H 0.012 0.988 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.752 10.410 -18.914 28.596 hybrid contribution 1.508 -0.247 0.141 1.535 sum -17.244 10.163 -18.773 27.442 Atomic orbital electron populations 1.21718 0.92498 1.03061 1.02803 1.21775 0.98650 0.91068 1.04574 1.20582 0.84094 0.98299 0.90596 0.85692 1.44285 1.75292 1.03804 1.11158 1.17952 0.93651 0.83581 0.94483 1.20784 1.09394 0.95023 0.98555 1.21146 0.96679 0.93807 0.98771 1.21223 1.04450 1.00825 0.93930 1.21232 0.96751 0.93008 0.98737 1.20841 1.07334 0.95883 0.97626 1.25598 0.94237 0.73789 0.78488 1.90660 1.65814 1.42773 1.41349 1.86584 1.22278 1.72813 1.44234 1.22702 0.78783 1.03805 0.96486 1.20633 0.83015 0.79977 0.87731 1.90681 1.54597 1.49691 1.51112 1.46060 1.06003 1.58738 1.24294 1.18636 0.94630 0.91120 0.81195 1.21632 0.90804 1.39803 1.07170 0.89701 1.26046 1.04883 0.94010 0.94616 1.70129 1.38321 1.38356 1.09947 0.85108 0.77369 0.78003 0.78720 1.17734 1.20485 1.20449 0.90995 0.92286 0.91521 0.89984 0.89600 0.74896 0.87518 0.85224 0.84670 0.83769 0.84383 0.86140 0.86458 0.75219 0.98913 0.98844 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.86 71.98 0.71 -0.89 16 2 C -0.12 -1.81 5.45 30.59 0.17 -1.64 16 3 C 0.17 3.18 2.16 44.24 0.10 3.28 16 4 H 0.13 2.20 6.66 -2.38 -0.02 2.19 16 5 N -0.71 -11.79 4.11 -322.50 -1.33 -13.11 16 6 C 0.20 3.95 6.62 38.22 0.25 4.20 16 7 C -0.22 -4.58 9.09 22.40 0.20 -4.38 16 8 C -0.09 -1.62 10.04 22.25 0.22 -1.40 16 9 C -0.18 -3.02 10.04 22.29 0.22 -2.79 16 10 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 11 C -0.19 -3.16 9.90 22.40 0.22 -2.94 16 12 C 0.44 11.20 6.99 71.23 0.50 11.70 16 13 O -0.52 -15.35 16.16 21.96 0.35 -14.99 16 14 O -0.34 -10.32 9.56 -45.00 -0.43 -10.75 16 15 C 0.06 1.74 5.94 71.24 0.42 2.16 16 16 C 0.50 20.03 7.91 87.66 0.69 20.72 16 17 O -0.58 -28.82 16.50 15.78 0.26 -28.56 16 18 N -0.70 -28.93 5.55 -466.80 -2.59 -31.52 16 19 C 0.27 14.35 5.43 85.63 0.46 14.81 16 20 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 21 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 22 C 0.00 0.23 5.46 84.66 0.46 0.70 16 23 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 24 Si 0.98 41.86 29.54 68.60 2.03 43.88 16 25 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.66 7.64 -2.39 -0.02 0.64 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 33 H 0.41 5.29 8.64 -92.70 -0.80 4.49 16 34 H 0.11 2.35 6.19 -2.91 -0.02 2.33 16 35 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 40 H 0.12 2.97 8.13 -2.38 -0.02 2.95 16 41 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 44 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.85 380.78 3.13 -71.72 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.55 Total: 25.27 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.10 Total: 13.07 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -3.63 Total: -99.63 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: 0.19 Total: -54.31 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -74.85 3.13 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733505290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.591 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds