Wall clock time and date at job start Tue Mar 31 2020 12:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 N 1.46498 * 109.47572 * 180.02562 * 3 2 1 5 5 C 1.46494 * 120.00068 * 270.00522 * 4 3 2 6 6 C 1.39051 * 120.00147 * 89.99748 * 4 3 2 7 7 C 1.39236 * 119.92329 * 359.73105 * 6 4 3 8 8 C 1.37600 * 120.07439 * 179.76349 * 7 6 4 9 9 C 1.39862 * 119.92125 * 0.52859 * 8 7 6 10 10 C 1.47411 * 120.07116 * 179.70130 * 9 8 7 11 11 O 1.21635 * 120.00147 * 137.61632 * 10 9 8 12 12 N 1.34776 * 120.00227 * 317.61754 * 10 9 8 13 13 C 1.36910 * 120.00019 * 2.06808 * 12 10 9 14 14 H 1.07994 * 120.00039 * 310.49694 * 13 12 10 15 15 C 1.39009 * 119.99914 * 130.49172 * 13 12 10 16 16 N 1.31389 * 120.00426 * 170.31914 * 15 13 12 17 17 Si 1.86800 * 120.00163 * 350.32168 * 15 13 12 18 18 H 1.48496 * 109.47435 * 95.20695 * 17 15 13 19 19 H 1.48505 * 109.47455 * 215.20715 * 17 15 13 20 20 H 1.48502 * 109.47155 * 335.20210 * 17 15 13 21 21 C 1.46499 * 120.00307 * 182.07249 * 12 10 9 22 22 C 1.50706 * 109.47027 * 84.64605 * 21 12 10 23 23 O 1.20819 * 119.99998 * 359.97438 * 22 21 12 24 24 O 1.34226 * 119.99694 * 180.02562 * 22 21 12 25 25 C 1.39853 * 119.85360 * 359.72464 * 9 8 7 26 26 C 1.37594 * 119.92506 * 0.02562 * 25 9 8 27 27 H 1.09005 * 109.47131 * 59.99468 * 1 2 3 28 28 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47401 * 300.00005 * 1 2 3 30 30 H 1.09000 * 109.47146 * 240.00473 * 2 1 3 31 31 H 1.08995 * 109.47515 * 120.00200 * 2 1 3 32 32 H 1.09003 * 109.47182 * 300.00720 * 3 2 1 33 33 H 1.09002 * 109.46946 * 59.99717 * 3 2 1 34 34 H 1.08999 * 109.47439 * 89.99502 * 5 4 3 35 35 H 1.08997 * 109.47331 * 209.99442 * 5 4 3 36 36 H 1.09007 * 109.47034 * 329.99564 * 5 4 3 37 37 H 1.08005 * 119.96221 * 359.97438 * 7 6 4 38 38 H 1.08000 * 120.03661 * 180.25285 * 8 7 6 39 39 H 0.96997 * 120.00616 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.47303 * 204.64609 * 21 12 10 41 41 H 1.08998 * 109.46653 * 324.64949 * 21 12 10 42 42 H 0.96707 * 116.99933 * 179.97438 * 24 22 21 43 43 H 1.07997 * 120.03913 * 179.97438 * 25 9 8 44 44 H 1.08003 * 119.96502 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.4424 1.2677 6 6 4.1998 1.4428 -1.2051 7 6 3.5015 1.4372 -2.4097 8 6 4.1859 1.4423 -3.6034 9 6 5.5845 1.4419 -3.6058 10 6 6.3210 1.4406 -4.8827 11 8 7.2991 2.1503 -5.0214 12 7 5.9106 0.6532 -5.8966 13 6 4.7853 -0.1138 -5.7555 14 1 4.6624 -0.7365 -4.8818 15 6 3.8010 -0.0908 -6.7368 16 7 2.8168 -0.9605 -6.7007 17 14 3.8775 1.1765 -8.1071 18 1 4.5424 0.5822 -9.2944 19 1 2.5003 1.5971 -8.4698 20 1 4.6506 2.3577 -7.6463 21 6 6.6687 0.6178 -7.1497 22 6 7.8016 -0.3681 -7.0238 23 8 7.9597 -0.9781 -5.9930 24 8 8.6354 -0.5677 -8.0566 25 6 6.2827 1.4421 -2.3940 26 6 5.5921 1.4422 -1.2039 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 4.4198 0.4147 1.5822 35 1 5.1904 1.9562 1.1371 36 1 3.6492 1.9561 2.0278 37 1 2.4215 1.4323 -2.4071 38 1 3.6436 1.4421 -4.5375 39 1 2.1297 -0.9442 -7.3852 40 1 6.0110 0.3134 -7.9638 41 1 7.0712 1.6089 -7.3589 42 1 9.3473 -1.2096 -7.9284 43 1 7.3627 1.4414 -2.3924 44 1 6.1307 1.4429 -0.2678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737008192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:49 Heat of formation + Delta-G solvation = -78.882411 kcal Electronic energy + Delta-G solvation = -27493.293125 eV Core-core repulsion = 23604.382323 eV Total energy + Delta-G solvation = -3888.910802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.96754 -39.33329 -38.31883 -36.14076 -35.52356 -34.86740 -33.32103 -32.05643 -30.49570 -29.93540 -27.86376 -27.41843 -25.28226 -24.46239 -22.35587 -21.55094 -21.47372 -20.46500 -19.16029 -17.83627 -17.60408 -16.96367 -16.53159 -15.85879 -15.54771 -15.06767 -14.98582 -14.72460 -14.63419 -14.42813 -13.91445 -13.65827 -13.31770 -13.01335 -12.93598 -12.90655 -12.61607 -12.45009 -12.12345 -12.01809 -11.88518 -11.81872 -11.62319 -11.35161 -11.30919 -11.09124 -11.00490 -10.69931 -10.60479 -10.20530 -10.16069 -9.91467 -9.36921 -9.31594 -8.76368 -8.30540 -7.85979 -6.88718 -6.50590 -4.27336 1.90920 2.13550 2.86164 2.98053 3.13825 3.19830 3.28631 3.33906 3.88958 4.02326 4.34492 4.59599 4.85098 4.93681 4.98006 5.07172 5.28290 5.32664 5.40743 5.49573 5.55431 5.62603 5.67056 5.73043 5.77092 5.83425 5.88031 5.97902 6.02086 6.07090 6.10070 6.14311 6.25613 6.32163 6.73662 6.75940 6.99602 7.01349 7.22006 7.33758 7.38556 7.54416 7.86330 7.96845 8.27269 8.50794 8.86193 9.18993 9.53576 10.57779 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.004279 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.679536 B = 6542.616942 C = 7749.301927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.125 3.875 4 N -0.633 5.633 5 C 0.096 3.904 6 C 0.223 3.777 7 C -0.211 4.211 8 C 0.000 4.000 9 C -0.154 4.154 10 C 0.552 3.448 11 O -0.588 6.588 12 N -0.453 5.453 13 C -0.334 4.334 14 H 0.107 0.893 15 C 0.067 3.933 16 N -0.859 5.859 17 Si 0.861 3.139 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.254 1.254 21 C 0.109 3.891 22 C 0.465 3.535 23 O -0.500 6.500 24 O -0.527 6.527 25 C -0.029 4.029 26 C -0.217 4.217 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.277 0.723 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.399 0.601 43 H 0.119 0.881 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 3.564 9.360 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.002 3.998 4 N -0.345 5.345 5 C -0.048 4.048 6 C 0.122 3.878 7 C -0.234 4.234 8 C -0.019 4.019 9 C -0.159 4.159 10 C 0.344 3.656 11 O -0.472 6.472 12 N -0.175 5.175 13 C -0.461 4.461 14 H 0.124 0.876 15 C -0.141 4.141 16 N -0.493 5.493 17 Si 0.686 3.314 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.178 1.178 21 C -0.016 4.016 22 C 0.305 3.695 23 O -0.385 6.385 24 O -0.339 6.339 25 C -0.049 4.049 26 C -0.240 4.240 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.257 0.743 43 H 0.137 0.863 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.925 3.951 9.600 10.558 hybrid contribution 0.334 -0.322 -0.728 0.864 sum -1.591 3.628 8.871 9.716 Atomic orbital electron populations 1.21698 0.95473 1.01897 1.01639 1.21995 0.95764 0.97839 1.02912 1.21468 0.79545 0.96466 1.02366 1.46246 1.04512 1.80563 1.03151 1.21572 0.97208 1.00825 0.85173 1.17906 0.91106 0.93327 0.85472 1.20609 0.99354 1.12535 0.90857 1.21451 0.93005 0.89261 0.98203 1.19432 0.93907 1.09967 0.92580 1.18373 0.83803 0.78890 0.84523 1.90639 1.29538 1.43728 1.83295 1.43250 1.23562 1.39356 1.11314 1.19078 0.92931 1.23754 1.10380 0.87566 1.25509 0.94898 0.95913 0.97782 1.69650 1.12522 1.32686 1.34489 0.87092 0.78601 0.83339 0.82336 1.19535 1.20586 1.17806 1.21341 0.90733 0.97745 0.91765 1.24527 0.82177 0.82221 0.80606 1.90665 1.71082 1.46697 1.30079 1.84577 1.42508 1.62010 1.44758 1.20798 0.99244 0.94152 0.90706 1.20377 0.91839 1.13841 0.97908 0.92409 0.92565 0.93043 0.90965 0.92217 0.90466 0.91421 0.93820 0.91346 0.92106 0.86235 0.83734 0.91288 0.87593 0.87322 0.74336 0.86295 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.15 -1.62 6.26 -26.73 -0.17 -1.79 16 3 C 0.12 1.38 5.18 -4.04 -0.02 1.36 16 4 N -0.63 -8.26 2.99 -179.61 -0.54 -8.79 16 5 C 0.10 0.97 10.22 59.84 0.61 1.58 16 6 C 0.22 3.65 6.55 -83.84 -0.55 3.10 16 7 C -0.21 -3.77 9.18 -39.44 -0.36 -4.13 16 8 C 0.00 0.00 8.09 -39.21 -0.32 -0.32 16 9 C -0.15 -3.41 5.28 -104.95 -0.55 -3.97 16 10 C 0.55 13.59 7.08 -12.53 -0.09 13.50 16 11 O -0.59 -15.27 16.61 5.25 0.09 -15.18 16 12 N -0.45 -11.08 1.55 -117.32 -0.18 -11.26 16 13 C -0.33 -8.55 6.61 -15.00 -0.10 -8.65 16 14 H 0.11 3.01 7.50 -52.49 -0.39 2.62 16 15 C 0.07 1.68 5.16 -17.46 -0.09 1.59 16 16 N -0.86 -22.67 13.96 55.50 0.77 -21.89 16 17 Si 0.86 18.90 24.87 -169.99 -4.23 14.67 16 18 H -0.27 -5.67 6.91 56.52 0.39 -5.28 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.25 -5.58 7.01 56.52 0.40 -5.19 16 21 C 0.11 2.41 4.39 -5.19 -0.02 2.39 16 22 C 0.46 9.90 8.36 36.01 0.30 10.20 16 23 O -0.50 -12.22 17.07 -18.74 -0.32 -12.54 16 24 O -0.53 -8.72 13.42 -39.25 -0.53 -9.24 16 25 C -0.03 -0.58 9.65 -39.21 -0.38 -0.95 16 26 C -0.22 -3.65 9.18 -39.45 -0.36 -4.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.89 6.18 -51.93 -0.32 0.57 16 33 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.68 6.17 -51.93 -0.32 0.36 16 36 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 37 H 0.12 1.92 6.12 -52.48 -0.32 1.60 16 38 H 0.15 3.19 6.27 -52.49 -0.33 2.86 16 39 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.11 2.26 4.30 -51.93 -0.22 2.04 16 41 H 0.11 2.25 7.56 -51.93 -0.39 1.86 16 42 H 0.40 4.63 9.10 45.56 0.41 5.05 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.12 1.65 6.11 -52.48 -0.32 1.33 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -31.85 362.90 -6.33 -38.18 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.14 Total: 11.72 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.73 Total: 8.86 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.06 Total: -41.95 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.76 Total: -36.96 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.23 Total: 14.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.85 -6.33 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737008192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.699 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds