Wall clock time and date at job start Tue Mar 31 2020 12:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 H 1.08996 * 109.47027 * 55.00131 * 3 2 1 5 5 C 1.50696 * 109.46970 * 175.00289 * 3 2 1 6 6 H 1.08002 * 119.99612 * 120.00457 * 5 3 2 7 7 C 1.37875 * 120.00046 * 300.00033 * 5 3 2 8 8 N 1.31514 * 119.99933 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47378 * 89.99730 * 9 7 5 11 11 H 1.48499 * 109.47007 * 209.99737 * 9 7 5 12 12 H 1.48499 * 109.46983 * 329.99667 * 9 7 5 13 13 O 1.45200 * 109.47177 * 295.00567 * 3 2 1 14 14 C 1.34754 * 117.00335 * 89.99483 * 13 3 2 15 15 O 1.21515 * 119.99718 * 0.02562 * 14 13 3 16 16 C 1.47398 * 119.99984 * 179.97438 * 14 13 3 17 17 C 1.40415 * 120.48161 * 180.02562 * 16 14 13 18 18 C 1.36829 * 118.49038 * 179.72648 * 17 16 14 19 19 C 1.39419 * 119.38607 * 0.02562 * 18 17 16 20 20 N 1.38424 * 119.53626 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00195 * 303.63897 * 20 19 18 22 22 C 1.53088 * 109.25636 * 177.60398 * 21 20 19 23 23 O 1.43010 * 109.26128 * 56.85041 * 22 21 20 24 24 C 1.43020 * 113.73687 * 301.32804 * 23 22 21 25 25 C 1.47009 * 110.99919 * 179.97438 * 20 19 18 26 26 N 1.32621 * 120.93226 * 0.02562 * 19 18 17 27 27 C 1.31659 * 121.64307 * 359.95538 * 26 19 18 28 28 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46915 * 299.99758 * 1 2 3 30 30 H 1.08999 * 109.47108 * 59.99852 * 1 2 3 31 31 H 1.08999 * 109.46915 * 240.00242 * 2 1 3 32 32 H 1.08991 * 109.47348 * 120.00289 * 2 1 3 33 33 H 0.96999 * 120.00178 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.75026 * 359.75033 * 17 16 14 35 35 H 1.08002 * 120.30595 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.50076 * 297.54066 * 21 20 19 37 37 H 1.09000 * 109.50826 * 57.66811 * 21 20 19 38 38 H 1.08997 * 109.51286 * 296.90934 * 22 21 20 39 39 H 1.09008 * 109.53911 * 176.80323 * 22 21 20 40 40 H 1.08999 * 109.50165 * 298.73065 * 24 23 22 41 41 H 1.09003 * 109.54332 * 178.62667 * 24 23 22 42 42 H 1.09001 * 109.50885 * 302.32632 * 25 20 19 43 43 H 1.08997 * 109.50680 * 62.42048 * 25 20 19 44 44 H 1.07991 * 119.74650 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8810 1.3816 10 1 6.4418 2.1139 2.0847 11 1 6.4395 -0.3101 2.1547 12 1 6.6135 0.8413 0.0276 13 8 1.6559 2.0918 -1.2406 14 6 0.4681 2.7280 -1.2559 15 8 -0.2274 2.7403 -0.2596 16 6 0.0130 3.4099 -2.4809 17 6 -1.2226 4.0763 -2.5079 18 6 -1.6023 4.7006 -3.6648 19 6 -0.7591 4.6570 -4.7742 20 7 -1.1404 5.2870 -5.9463 21 6 -2.4432 4.7897 -6.4121 22 6 -2.8533 5.5533 -7.6740 23 8 -1.8328 5.4088 -8.6654 24 6 -0.5508 5.8837 -8.2454 25 6 -0.1170 5.1240 -6.9890 26 7 0.4027 4.0196 -4.7228 27 6 0.8064 3.4064 -3.6299 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0605 2.9501 34 1 -1.8586 4.0961 -1.6353 35 1 -2.5469 5.2215 -3.7183 36 1 -2.3668 3.7262 -6.6387 37 1 -3.1909 4.9439 -5.6342 38 1 -2.9818 6.6089 -7.4351 39 1 -3.7912 5.1497 -8.0556 40 1 -0.6123 6.9490 -8.0231 41 1 0.1772 5.7191 -9.0398 42 1 0.8328 5.5223 -6.6322 43 1 -0.0026 4.0659 -7.2245 44 1 1.7585 2.8969 -3.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:33 Heat of formation + Delta-G solvation = -82.885382 kcal Electronic energy + Delta-G solvation = -26803.350802 eV Core-core repulsion = 22914.266418 eV Total energy + Delta-G solvation = -3889.084384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.14029 -39.77887 -38.90271 -36.18989 -35.67540 -33.54140 -32.82221 -31.55917 -31.44949 -30.80565 -27.79071 -27.08725 -24.99861 -23.98935 -23.11391 -22.92992 -21.30446 -20.63500 -19.62504 -18.20308 -17.49826 -17.07297 -16.50196 -16.19658 -15.77187 -15.71923 -15.50490 -15.30922 -15.16786 -14.77298 -14.52822 -14.29096 -13.61062 -13.37339 -13.06297 -12.92559 -12.70909 -12.61120 -12.15210 -11.94087 -11.79476 -11.51800 -11.37763 -11.22154 -11.10300 -10.96574 -10.69561 -10.48413 -10.30242 -10.06050 -10.01582 -9.83721 -9.78074 -9.52913 -9.37297 -8.83744 -8.48639 -8.37640 -6.20661 -4.27817 0.59672 1.18817 2.85283 3.17476 3.23543 3.29036 3.32440 3.45006 3.56935 3.87662 4.15610 4.31693 4.44219 4.54351 4.69063 4.73525 4.85352 4.88039 4.90156 4.95884 5.10778 5.11784 5.22729 5.33715 5.44994 5.51121 5.57031 5.65448 5.83847 6.11030 6.20728 6.23109 6.27731 6.30001 6.43893 6.69260 6.80166 6.84724 6.93196 7.13931 7.19991 7.58788 7.70677 7.75310 7.90456 8.12483 8.57209 8.84653 9.37432 10.86155 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002647 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.301309 B =10574.616588 C =11337.665787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.351 6.351 14 C 0.503 3.497 15 O -0.513 6.513 16 C -0.191 4.191 17 C 0.003 3.997 18 C -0.198 4.198 19 C 0.328 3.672 20 N -0.477 5.477 21 C 0.021 3.979 22 C 0.064 3.936 23 O -0.384 6.384 24 C 0.060 3.940 25 C 0.028 3.972 26 N -0.526 5.526 27 C 0.186 3.814 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.266 0.734 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 9.335 -17.555 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.347 3.653 15 O -0.404 6.404 16 C -0.195 4.195 17 C -0.022 4.022 18 C -0.220 4.220 19 C 0.096 3.904 20 N -0.194 5.194 21 C -0.105 4.105 22 C -0.013 4.013 23 O -0.303 6.303 24 C -0.017 4.017 25 C -0.099 4.099 26 N -0.241 5.241 27 C 0.028 3.972 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.397 9.643 -17.952 23.349 hybrid contribution 0.533 -0.645 1.316 1.559 sum -10.864 8.998 -16.637 21.812 Atomic orbital electron populations 1.21860 0.98404 0.99032 1.00716 1.22025 0.92617 0.99297 1.03440 1.20719 0.95069 0.88744 0.78405 0.93402 1.21030 0.89565 1.39028 1.06326 0.91259 1.24880 0.99258 0.94720 0.95060 1.69886 1.35418 1.37804 1.09435 0.86281 0.83846 0.77696 0.78383 1.20412 1.20948 1.19554 1.86522 1.33417 1.62380 1.44364 1.20565 0.81157 0.76775 0.86835 1.90786 1.55643 1.58852 1.35110 1.20365 0.97893 1.05920 0.95353 1.21319 0.93519 0.89655 0.97740 1.21172 1.02410 1.05595 0.92839 1.19972 0.90421 0.88545 0.91422 1.59120 1.04953 1.51784 1.03585 1.23005 0.89668 0.98907 0.98968 1.22695 0.91452 1.00032 0.87130 1.88013 1.18476 1.84201 1.39587 1.22808 0.85163 0.97781 0.95968 1.22718 0.95270 1.01408 0.90469 1.67753 1.16397 1.11056 1.28849 1.23132 0.98176 0.90193 0.85691 0.94790 0.92782 0.95025 0.93901 0.87266 0.92358 0.83281 0.84117 0.92344 0.88486 0.91865 0.87744 0.92142 0.87784 0.88226 0.91830 0.80582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.34 8.90 -34.44 -0.31 -14.64 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.35 -8.11 9.07 -40.64 -0.37 -8.48 16 14 C 0.50 10.42 6.34 34.46 0.22 10.64 16 15 O -0.51 -11.65 13.60 -19.28 -0.26 -11.91 16 16 C -0.19 -3.14 5.89 -104.83 -0.62 -3.75 16 17 C 0.00 0.05 9.65 -39.27 -0.38 -0.33 16 18 C -0.20 -2.26 9.15 -39.65 -0.36 -2.62 16 19 C 0.33 4.06 6.39 -155.29 -0.99 3.07 16 20 N -0.48 -4.87 4.73 -172.93 -0.82 -5.69 16 21 C 0.02 0.16 5.39 -3.71 -0.02 0.14 16 22 C 0.06 0.43 7.01 37.20 0.26 0.69 16 23 O -0.38 -3.49 10.83 -35.23 -0.38 -3.87 16 24 C 0.06 0.47 7.01 37.21 0.26 0.73 16 25 C 0.03 0.27 4.81 -3.71 -0.02 0.26 16 26 N -0.53 -7.40 8.66 -12.13 -0.11 -7.50 16 27 C 0.19 2.83 10.79 -17.11 -0.18 2.64 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 30 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 1.90 7.73 -52.49 -0.41 1.49 16 35 H 0.14 1.19 7.16 -52.49 -0.38 0.81 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.60 6.80 -51.93 -0.35 0.25 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.01 7.85 -51.93 -0.41 0.60 16 43 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 44 H 0.18 2.61 7.61 -52.49 -0.40 2.21 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -30.98 357.20 -9.34 -40.32 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.26 Total: 2.15 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.13 Total: -2.07 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.30 Total: -37.34 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.01 Total: -24.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.98 -9.34 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds