Wall clock time and date at job start Tue Mar 31 2020 12:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 H 1.08996 * 109.47027 * 55.00131 * 3 2 1 5 5 C 1.50696 * 109.46970 * 175.00289 * 3 2 1 6 6 H 1.08002 * 119.99612 * 120.00457 * 5 3 2 7 7 C 1.37875 * 120.00046 * 300.00033 * 5 3 2 8 8 N 1.31514 * 119.99933 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47378 * 89.99730 * 9 7 5 11 11 H 1.48499 * 109.47007 * 209.99737 * 9 7 5 12 12 H 1.48499 * 109.46983 * 329.99667 * 9 7 5 13 13 O 1.45200 * 109.47177 * 295.00567 * 3 2 1 14 14 C 1.34754 * 117.00335 * 89.99483 * 13 3 2 15 15 O 1.21515 * 119.99718 * 0.02562 * 14 13 3 16 16 C 1.47398 * 119.99984 * 179.97438 * 14 13 3 17 17 C 1.40415 * 120.48161 * 180.02562 * 16 14 13 18 18 C 1.36829 * 118.49038 * 179.72648 * 17 16 14 19 19 C 1.39419 * 119.38607 * 0.02562 * 18 17 16 20 20 N 1.38424 * 119.53626 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00195 * 303.63897 * 20 19 18 22 22 C 1.53088 * 109.25636 * 177.60398 * 21 20 19 23 23 O 1.43010 * 109.26128 * 56.85041 * 22 21 20 24 24 C 1.43020 * 113.73687 * 301.32804 * 23 22 21 25 25 C 1.47009 * 110.99919 * 179.97438 * 20 19 18 26 26 N 1.32621 * 120.93226 * 0.02562 * 19 18 17 27 27 C 1.31659 * 121.64307 * 359.95538 * 26 19 18 28 28 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46915 * 299.99758 * 1 2 3 30 30 H 1.08999 * 109.47108 * 59.99852 * 1 2 3 31 31 H 1.08999 * 109.46915 * 240.00242 * 2 1 3 32 32 H 1.08991 * 109.47348 * 120.00289 * 2 1 3 33 33 H 0.96999 * 120.00178 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.75026 * 359.75033 * 17 16 14 35 35 H 1.08002 * 120.30595 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.50076 * 297.54066 * 21 20 19 37 37 H 1.09000 * 109.50826 * 57.66811 * 21 20 19 38 38 H 1.08997 * 109.51286 * 296.90934 * 22 21 20 39 39 H 1.09008 * 109.53911 * 176.80323 * 22 21 20 40 40 H 1.08999 * 109.50165 * 298.73065 * 24 23 22 41 41 H 1.09003 * 109.54332 * 178.62667 * 24 23 22 42 42 H 1.09001 * 109.50885 * 302.32632 * 25 20 19 43 43 H 1.08997 * 109.50680 * 62.42048 * 25 20 19 44 44 H 1.07991 * 119.74650 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8810 1.3816 10 1 6.4418 2.1139 2.0847 11 1 6.4395 -0.3101 2.1547 12 1 6.6135 0.8413 0.0276 13 8 1.6559 2.0918 -1.2406 14 6 0.4681 2.7280 -1.2559 15 8 -0.2274 2.7403 -0.2596 16 6 0.0130 3.4099 -2.4809 17 6 -1.2226 4.0763 -2.5079 18 6 -1.6023 4.7006 -3.6648 19 6 -0.7591 4.6570 -4.7742 20 7 -1.1404 5.2870 -5.9463 21 6 -2.4432 4.7897 -6.4121 22 6 -2.8533 5.5533 -7.6740 23 8 -1.8328 5.4088 -8.6654 24 6 -0.5508 5.8837 -8.2454 25 6 -0.1170 5.1240 -6.9890 26 7 0.4027 4.0196 -4.7228 27 6 0.8064 3.4064 -3.6299 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0605 2.9501 34 1 -1.8586 4.0961 -1.6353 35 1 -2.5469 5.2215 -3.7183 36 1 -2.3668 3.7262 -6.6387 37 1 -3.1909 4.9439 -5.6342 38 1 -2.9818 6.6089 -7.4351 39 1 -3.7912 5.1497 -8.0556 40 1 -0.6123 6.9490 -8.0231 41 1 0.1772 5.7191 -9.0398 42 1 0.8328 5.5223 -6.6322 43 1 -0.0026 4.0659 -7.2245 44 1 1.7585 2.8969 -3.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:32 Heat of formation + Delta-G solvation = -101.650387 kcal Electronic energy + Delta-G solvation = -26804.164513 eV Core-core repulsion = 22914.266418 eV Total energy + Delta-G solvation = -3889.898096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16576 -41.20400 -39.93865 -37.68870 -36.82210 -35.50997 -33.87322 -33.39708 -32.23439 -31.90713 -29.39533 -28.34373 -25.80754 -25.53820 -24.61665 -23.93122 -22.66465 -21.66084 -21.34011 -19.40037 -18.82819 -18.65590 -17.77805 -17.44003 -17.13493 -16.90007 -16.55682 -16.44918 -16.15176 -15.94932 -15.53264 -15.37806 -14.89205 -14.79948 -14.64304 -14.26802 -13.95845 -13.79089 -13.39814 -13.33823 -13.29444 -13.12994 -12.81522 -12.61148 -12.56523 -12.39666 -12.14310 -11.79009 -11.72301 -11.59476 -11.43224 -11.31666 -11.10287 -10.83101 -10.69853 -10.58584 -10.52190 -9.37537 -8.27763 -6.44229 -0.57624 0.13083 1.41668 1.43212 1.51240 1.55006 1.94159 2.20808 2.41435 2.67476 2.89983 3.02141 3.19917 3.69331 3.75298 3.79997 3.82169 3.95998 4.03303 4.10621 4.19817 4.27383 4.36785 4.38793 4.47702 4.52046 4.55581 4.70970 4.73561 4.79350 4.83634 4.88773 4.94313 5.01018 5.09411 5.20226 5.20719 5.36493 5.44588 5.50920 5.66258 5.84887 5.94899 6.09641 6.12357 6.59464 6.68133 6.94332 7.26774 8.79115 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002647 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.301309 B =10574.616588 C =11337.665787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.263 1.263 13 O -0.358 6.358 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.216 4.216 17 C 0.007 3.993 18 C -0.182 4.182 19 C 0.332 3.668 20 N -0.474 5.474 21 C 0.018 3.982 22 C 0.063 3.937 23 O -0.402 6.402 24 C 0.065 3.935 25 C 0.029 3.971 26 N -0.538 5.538 27 C 0.188 3.812 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.271 0.729 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.049 0.951 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 10.381 -19.414 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.188 1.188 13 O -0.274 6.274 14 C 0.347 3.653 15 O -0.432 6.432 16 C -0.221 4.221 17 C -0.019 4.019 18 C -0.204 4.204 19 C 0.099 3.901 20 N -0.191 5.191 21 C -0.107 4.107 22 C -0.014 4.014 23 O -0.321 6.321 24 C -0.012 4.012 25 C -0.098 4.098 26 N -0.252 5.252 27 C 0.030 3.970 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.198 0.802 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.455 10.704 -19.844 25.758 hybrid contribution 0.736 -0.854 1.766 2.096 sum -11.719 9.850 -18.077 23.689 Atomic orbital electron populations 1.21708 0.96301 1.00596 1.00062 1.21870 0.94459 0.98029 1.02405 1.20411 0.94571 0.89279 0.78372 0.97344 1.21318 0.90441 1.39947 1.06948 0.91563 1.25775 1.04127 0.93884 0.94384 1.70006 1.37403 1.37937 1.09817 0.85231 0.77833 0.77978 0.78683 1.19882 1.20016 1.18750 1.86505 1.35133 1.63006 1.42757 1.21275 0.79915 0.76031 0.88066 1.90759 1.56028 1.59951 1.36499 1.20152 0.99875 1.08214 0.93823 1.21455 0.92343 0.89160 0.98932 1.21478 1.03368 1.04372 0.91196 1.20409 0.89791 0.87173 0.92703 1.59194 1.06117 1.50727 1.03109 1.23191 0.88678 0.98508 1.00355 1.22894 0.91654 1.00674 0.86166 1.87998 1.19087 1.84413 1.40605 1.22843 0.85262 0.97781 0.95333 1.22726 0.95075 1.00823 0.91199 1.67795 1.17624 1.11697 1.28110 1.23013 0.97933 0.90338 0.85726 0.91992 0.94370 0.94668 0.93550 0.89433 0.92012 0.82517 0.80223 0.93279 0.86147 0.90795 0.85529 0.91259 0.86397 0.89037 0.93269 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.56 71.98 0.62 -5.09 16 2 C -0.13 -6.55 5.49 30.60 0.17 -6.38 16 3 C 0.23 12.38 2.25 29.85 0.07 12.45 16 4 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -31.15 8.90 25.60 0.23 -30.92 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 O -0.36 -17.27 9.07 -56.64 -0.51 -17.79 16 14 C 0.50 21.53 6.34 70.23 0.45 21.97 16 15 O -0.54 -25.47 13.60 19.79 0.27 -25.20 16 16 C -0.22 -7.16 5.89 -20.00 -0.12 -7.28 16 17 C 0.01 0.17 9.65 22.47 0.22 0.39 16 18 C -0.18 -3.64 9.15 22.22 0.20 -3.44 16 19 C 0.33 7.53 6.39 133.26 0.85 8.38 16 20 N -0.47 -8.49 4.73 -701.03 -3.32 -11.81 16 21 C 0.02 0.22 5.39 86.31 0.47 0.69 16 22 C 0.06 0.64 7.01 72.01 0.50 1.14 16 23 O -0.40 -6.28 10.83 -148.98 -1.61 -7.89 16 24 C 0.06 0.87 7.01 72.01 0.50 1.37 16 25 C 0.03 0.51 4.81 86.31 0.42 0.93 16 26 N -0.54 -14.75 8.66 -192.28 -1.67 -16.42 16 27 C 0.19 5.78 10.79 85.05 0.92 6.70 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.77 7.79 -2.39 -0.02 1.75 16 30 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 4.82 5.95 -2.39 -0.01 4.80 16 33 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.16 3.80 7.73 -2.91 -0.02 3.78 16 35 H 0.18 2.17 7.16 -2.91 -0.02 2.15 16 36 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.12 0.95 6.80 -2.39 -0.02 0.93 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.77 7.85 -2.39 -0.02 1.75 16 43 H 0.05 1.03 8.02 -2.39 -0.02 1.01 16 44 H 0.17 5.28 7.61 -2.91 -0.02 5.26 16 Total: -1.00 -69.05 357.20 2.37 -66.68 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.01 Total: 17.04 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.93 Total: 2.37 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -4.74 Total: -80.19 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -1.86 Total: -50.88 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.05 2.37 -66.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.973 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds