Wall clock time and date at job start Tue Mar 31 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 H 1.09002 * 109.47370 * 305.00547 * 3 2 1 5 5 C 1.50694 * 109.47272 * 184.99940 * 3 2 1 6 6 H 1.08000 * 120.00183 * 239.99771 * 5 3 2 7 7 C 1.37879 * 119.99835 * 60.00450 * 5 3 2 8 8 N 1.31514 * 120.00373 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47212 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47321 * 119.99466 * 9 7 5 12 12 H 1.48498 * 109.47330 * 239.99724 * 9 7 5 13 13 O 1.45202 * 109.47012 * 64.99727 * 3 2 1 14 14 C 1.34706 * 117.00594 * 270.00386 * 13 3 2 15 15 O 1.21474 * 119.99571 * 359.97438 * 14 13 3 16 16 C 1.47738 * 120.00438 * 180.02562 * 14 13 3 17 17 C 1.39628 * 120.52451 * 359.97438 * 16 14 13 18 18 N 1.31651 * 120.72279 * 180.02562 * 17 16 14 19 19 C 1.31891 * 121.96929 * 0.02562 * 18 17 16 20 20 C 1.38991 * 120.98647 * 359.97438 * 19 18 17 21 21 N 1.39744 * 120.42065 * 180.02562 * 20 19 18 22 22 C 1.47014 * 111.00063 * 359.97438 * 21 20 19 23 23 C 1.53096 * 109.25675 * 182.39350 * 22 21 20 24 24 O 1.43015 * 109.25724 * 303.14825 * 23 22 21 25 25 C 1.43010 * 113.73980 * 58.67537 * 24 23 22 26 26 C 1.47017 * 110.99884 * 123.63441 * 21 20 19 27 27 C 1.39058 * 119.15689 * 0.29020 * 20 19 18 28 28 H 1.08996 * 109.47303 * 300.00118 * 1 2 3 29 29 H 1.09002 * 109.47263 * 59.99507 * 1 2 3 30 30 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47220 * 240.00413 * 2 1 3 32 32 H 1.08994 * 109.47275 * 119.99837 * 2 1 3 33 33 H 0.96995 * 120.00331 * 180.02562 * 8 7 5 34 34 H 1.07999 * 119.63861 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.50643 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.50706 * 62.45667 * 22 21 20 37 37 H 1.08995 * 109.54210 * 302.34611 * 22 21 20 38 38 H 1.08997 * 109.50375 * 183.21864 * 23 22 21 39 39 H 1.08996 * 109.54637 * 63.10402 * 23 22 21 40 40 H 1.08993 * 109.51045 * 61.26026 * 25 24 23 41 41 H 1.08999 * 109.51323 * 181.39624 * 25 24 23 42 42 H 1.09006 * 109.50736 * 297.54263 * 26 21 20 43 43 H 1.08995 * 109.50709 * 57.62868 * 26 21 20 44 44 H 1.07998 * 120.88773 * 179.72518 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5473 -0.1948 11 1 6.4970 -0.5175 -1.4630 12 1 6.3990 1.6167 -2.6103 13 8 1.6559 2.0917 1.2407 14 6 0.4685 2.7277 1.2561 15 8 -0.2268 2.7400 0.2601 16 6 0.0124 3.4111 2.4839 17 6 0.8030 3.4043 3.6348 18 7 0.4001 4.0116 4.7312 19 6 -0.7542 4.6465 4.7938 20 6 -1.6014 4.7014 3.6933 21 7 -2.8216 5.3778 3.7727 22 6 -3.0156 5.9595 5.1088 23 6 -4.3867 6.6379 5.1700 24 8 -4.4737 7.6200 4.1341 25 6 -4.2902 7.0879 2.8194 26 6 -2.9183 6.4137 2.7339 27 6 -1.2218 4.0699 2.5140 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 1.7550 2.8945 3.6257 35 1 -1.0452 5.1316 5.7138 36 1 -2.2359 6.6965 5.3016 37 1 -2.9655 5.1716 5.8603 38 1 -4.5114 7.1197 6.1397 39 1 -5.1691 5.8919 5.0309 40 1 -5.0693 6.3546 2.6115 41 1 -4.3450 7.8951 2.0890 42 1 -2.1371 7.1580 2.8883 43 1 -2.7967 5.9568 1.7519 44 1 -1.8604 4.0911 1.6433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:42 Heat of formation + Delta-G solvation = -84.923426 kcal Electronic energy + Delta-G solvation = -26966.352431 eV Core-core repulsion = 23077.179670 eV Total energy + Delta-G solvation = -3889.172760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.15309 -39.81427 -38.97207 -36.32741 -35.88964 -33.57800 -32.65081 -31.64337 -31.39041 -30.68606 -27.42458 -27.12089 -25.64207 -24.06931 -23.11658 -22.73820 -21.49213 -20.57681 -19.60668 -18.22062 -17.27036 -16.89879 -16.77962 -16.46225 -15.95861 -15.67938 -15.58524 -15.32455 -15.22147 -14.88998 -14.55470 -14.47491 -13.69970 -13.36841 -13.07442 -12.90885 -12.75446 -12.48204 -12.20821 -11.95827 -11.75683 -11.54844 -11.43394 -11.22887 -11.19037 -11.00532 -10.80248 -10.69410 -10.32103 -10.20952 -9.97933 -9.79241 -9.68230 -9.48427 -9.36351 -8.85576 -8.49665 -8.31261 -6.22248 -4.29422 0.57244 1.06633 2.90736 3.09012 3.21723 3.28940 3.33254 3.41123 3.53830 3.84766 4.25377 4.29622 4.39595 4.42134 4.52900 4.64864 4.67443 4.80616 4.86610 5.01096 5.06812 5.10140 5.13669 5.18362 5.28571 5.38785 5.47558 5.56148 5.71333 6.08943 6.19208 6.19853 6.26644 6.38090 6.43315 6.66270 6.72231 6.81900 6.91130 7.11911 7.16586 7.56923 7.68492 7.77688 7.87486 8.10241 8.52089 8.82182 9.35914 10.84588 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.002696 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.874965 B =10382.382099 C =10697.447988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.347 6.347 14 C 0.501 3.499 15 O -0.508 6.508 16 C -0.136 4.136 17 C 0.133 3.867 18 N -0.469 5.469 19 C 0.074 3.926 20 C 0.042 3.958 21 N -0.480 5.480 22 C 0.009 3.991 23 C 0.064 3.936 24 O -0.384 6.384 25 C 0.064 3.936 26 C 0.015 3.985 27 C -0.037 4.037 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.959 10.954 13.097 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.263 6.263 14 C 0.344 3.656 15 O -0.398 6.398 16 C -0.140 4.140 17 C -0.026 4.026 18 N -0.176 5.176 19 C -0.086 4.086 20 C -0.057 4.057 21 N -0.197 5.197 22 C -0.118 4.118 23 C -0.013 4.013 24 O -0.302 6.302 25 C -0.014 4.014 26 C -0.110 4.110 27 C -0.065 4.065 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.193 0.807 35 H 0.177 0.823 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.044 10.719 13.285 22.105 hybrid contribution 0.930 -0.014 -0.974 1.347 sum -13.113 10.705 12.311 20.931 Atomic orbital electron populations 1.21864 0.98382 0.99120 1.00691 1.22031 0.92627 0.99234 1.03521 1.20762 0.95162 0.88783 0.78267 0.93362 1.21067 0.89496 1.39026 1.06329 0.91150 1.24885 0.99296 0.94712 0.95038 1.69892 1.35352 1.37779 1.09494 0.86226 0.83806 0.77916 0.78251 1.19420 1.20685 1.20771 1.86525 1.33132 1.62193 1.44468 1.20628 0.81318 0.76970 0.86722 1.90786 1.55524 1.58550 1.34968 1.20382 0.96438 1.02131 0.95073 1.23274 0.99376 0.93572 0.86337 1.67706 1.14833 1.07799 1.27309 1.23182 0.89367 0.97644 0.98365 1.19759 0.90274 1.00087 0.95618 1.59312 1.28640 1.26497 1.05280 1.23033 0.99120 0.99304 0.90358 1.22699 0.95139 0.91632 0.91867 1.88011 1.92741 1.34418 1.15061 1.22718 0.94981 0.98764 0.84891 1.23033 0.99033 0.93035 0.95931 1.21337 0.94572 0.92986 0.97587 0.95034 0.92797 0.94712 0.87210 0.93819 0.92389 0.80651 0.82314 0.92302 0.88527 0.87833 0.91892 0.91788 0.87745 0.92575 0.88482 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.76 2.25 -27.89 -0.06 5.70 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.24 8.90 -34.44 -0.31 -14.54 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 O -0.35 -7.97 9.08 -40.51 -0.37 -8.34 16 14 C 0.50 10.31 6.36 34.61 0.22 10.53 16 15 O -0.51 -11.40 13.60 -19.25 -0.26 -11.67 16 16 C -0.14 -2.25 5.89 -104.86 -0.62 -2.87 16 17 C 0.13 2.04 10.78 -17.11 -0.18 1.86 16 18 N -0.47 -6.62 10.34 -12.74 -0.13 -6.75 16 19 C 0.07 0.87 10.00 -17.25 -0.17 0.70 16 20 C 0.04 0.49 5.64 -83.67 -0.47 0.02 16 21 N -0.48 -4.69 4.78 -170.71 -0.82 -5.50 16 22 C 0.01 0.07 4.34 -3.71 -0.02 0.05 16 23 C 0.06 0.43 7.01 37.21 0.26 0.69 16 24 O -0.38 -3.38 10.83 -35.23 -0.38 -3.77 16 25 C 0.06 0.48 7.01 37.21 0.26 0.74 16 26 C 0.02 0.14 5.42 -3.71 -0.02 0.12 16 27 C -0.04 -0.52 8.87 -38.64 -0.34 -0.86 16 28 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 29 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 2.90 5.95 -51.93 -0.31 2.60 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.18 2.63 7.62 -52.49 -0.40 2.23 16 35 H 0.16 1.39 5.81 -52.49 -0.30 1.08 16 36 H 0.06 0.43 7.55 -51.93 -0.39 0.04 16 37 H 0.10 0.60 7.24 -51.93 -0.38 0.22 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.85 6.93 -51.93 -0.36 0.49 16 44 H 0.15 2.06 6.97 -52.49 -0.37 1.70 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -30.70 354.75 -8.48 -39.18 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.10 Total: 2.33 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.37 Total: -2.53 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.32 Total: -36.26 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.01 Total: -23.77 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.70 -8.48 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.743 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds