Wall clock time and date at job start Tue Mar 31 2020 12:28:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47088 * 2 1
4 4 H 1.09005 * 109.47120 * 304.58812 * 3 2 1
5 5 C 1.50708 * 109.47237 * 184.59438 * 3 2 1
6 6 H 1.08000 * 119.99782 * 245.61424 * 5 3 2
7 7 C 1.37874 * 120.00341 * 65.60974 * 5 3 2
8 8 N 1.31512 * 120.00060 * 196.33489 * 7 5 3
9 9 Si 1.86808 * 119.99737 * 16.33644 * 7 5 3
10 10 H 1.48502 * 109.46951 * 179.97438 * 9 7 5
11 11 H 1.48501 * 109.47054 * 300.00062 * 9 7 5
12 12 H 1.48492 * 109.46881 * 60.00097 * 9 7 5
13 13 O 1.45196 * 109.47297 * 64.58979 * 3 2 1
14 14 C 1.34227 * 117.00141 * 270.00340 * 13 3 2
15 15 O 1.20823 * 119.99881 * 359.97438 * 14 13 3
16 16 C 1.50706 * 119.99643 * 179.97438 * 14 13 3
17 17 C 1.53006 * 109.46677 * 179.97438 * 16 14 13
18 18 H 1.09000 * 109.47176 * 304.99677 * 17 16 14
19 19 N 1.46500 * 109.47099 * 65.00033 * 17 16 14
20 20 C 1.34776 * 119.99809 * 205.15319 * 19 17 16
21 21 N 1.34779 * 119.99547 * 184.74706 * 20 19 17
22 22 O 1.21587 * 120.00116 * 4.75247 * 20 19 17
23 23 C 1.50702 * 109.46864 * 185.00112 * 17 16 14
24 24 C 1.38236 * 119.99720 * 285.28895 * 23 17 16
25 25 C 1.38238 * 119.99721 * 179.79042 * 24 23 17
26 26 C 1.38229 * 119.99655 * 0.44044 * 25 24 23
27 27 C 1.38236 * 120.00574 * 359.81504 * 26 25 24
28 28 C 1.38228 * 120.00039 * 105.56538 * 23 17 16
29 29 H 1.08998 * 109.47038 * 60.00210 * 1 2 3
30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47440 * 299.99775 * 1 2 3
32 32 H 1.09002 * 109.47234 * 240.00320 * 2 1 3
33 33 H 1.09001 * 109.47537 * 119.99825 * 2 1 3
34 34 H 0.96992 * 120.00324 * 354.88780 * 8 7 5
35 35 H 1.08996 * 109.47412 * 299.99727 * 16 14 13
36 36 H 1.09003 * 109.47095 * 60.00092 * 16 14 13
37 37 H 0.97002 * 119.99897 * 25.15685 * 19 17 16
38 38 H 0.96998 * 120.00222 * 0.02562 * 21 20 19
39 39 H 0.97003 * 119.99512 * 179.97438 * 21 20 19
40 40 H 1.08005 * 120.00037 * 359.97438 * 24 23 17
41 41 H 1.08000 * 119.99840 * 180.27358 * 25 24 23
42 42 H 1.08009 * 119.99641 * 179.83152 * 26 25 24
43 43 H 1.07994 * 120.00241 * 180.02562 * 27 26 25
44 44 H 1.08004 * 120.00268 * 359.97438 * 28 23 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6110 1.9795 -0.8461
5 6 3.5427 1.4440 -0.1138
6 1 4.1459 1.8079 0.7049
7 6 4.1476 0.9809 -1.2630
8 7 5.4274 0.6782 -1.2563
9 14 3.1492 0.7835 -2.8295
10 1 4.0260 0.2742 -3.9144
11 1 2.0430 -0.1787 -2.5935
12 1 2.5852 2.0987 -3.2259
13 8 1.6475 2.0946 1.2365
14 6 0.4643 2.7284 1.2423
15 8 -0.2206 2.7382 0.2470
16 6 -0.0099 3.4275 2.4903
17 6 -1.3763 4.0647 2.2300
18 1 -1.3118 4.7210 1.3620
19 7 -2.3647 3.0138 1.9752
20 6 -3.4657 3.2863 1.2474
21 7 -4.4209 2.3480 1.0932
22 8 -3.5974 4.3786 0.7298
23 6 -1.7947 4.8662 3.4356
24 6 -2.2375 4.2207 4.5750
25 6 -2.6171 4.9558 5.6825
26 6 -2.5626 6.3365 5.6473
27 6 -2.1249 6.9822 4.5061
28 6 -1.7411 6.2470 3.4002
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 5.9623 0.8501 -0.4657
35 1 -0.0943 2.7049 3.3019
36 1 0.7053 4.2024 2.7666
37 1 -2.2266 2.1217 2.3305
38 1 -4.3160 1.4767 1.5064
39 1 -5.2135 2.5443 0.5696
40 1 -2.2840 3.1419 4.6010
41 1 -2.9589 4.4513 6.5742
42 1 -2.8619 6.9109 6.5117
43 1 -2.0820 8.0610 4.4789
44 1 -1.3991 6.7515 2.5086
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787089950.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:32
Heat of formation + Delta-G solvation = -102.578683 kcal
Electronic energy + Delta-G solvation = -27526.341101 eV
Core-core repulsion = 23636.402751 eV
Total energy + Delta-G solvation = -3889.938350 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.56790 -39.55800 -38.98890 -36.40236 -35.16072 -33.70763 -33.58588 -31.96528
-31.35200 -30.97862 -29.91775 -27.56806 -24.86023 -22.82975 -22.53920 -21.87381
-21.22627 -20.43847 -19.57495 -18.35794 -17.90404 -17.50226 -17.11067 -16.61746
-16.04897 -15.62728 -15.41728 -15.13646 -14.77363 -14.37606 -14.12747 -13.97238
-13.53260 -13.42506 -13.27177 -13.00543 -12.72165 -12.56735 -12.54424 -12.14566
-11.69080 -11.59014 -11.41943 -11.27238 -11.11512 -10.95610 -10.55589 -10.23728
-10.03963 -9.91419 -9.68866 -9.68443 -9.53073 -9.16387 -9.04085 -8.88410
-8.85585 -8.39672 -6.66323 -4.27462 1.15624 1.26965 2.79972 2.89554
3.27996 3.29616 3.38389 3.38711 3.53131 3.70285 4.33985 4.44563
4.64084 4.67045 4.76195 4.86790 4.97720 5.07575 5.09582 5.34006
5.37428 5.48387 5.58804 5.73795 5.81405 5.83098 5.90668 5.92095
6.02190 6.30105 6.32825 6.36370 6.41217 6.50952 6.55861 6.69425
6.74025 6.78655 6.83998 6.89571 7.14782 7.37636 7.80319 7.94426
8.22003 8.46945 8.67257 8.81740 9.40789 10.76550
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017139 B = 0.003550 C = 0.003212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1633.265078 B = 7885.379103 C = 8715.332490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.148 4.148
3 C 0.202 3.798
4 H 0.038 0.962
5 C -0.607 4.607
6 H 0.068 0.932
7 C 0.040 3.960
8 N -0.894 5.894
9 Si 1.036 2.964
10 H -0.279 1.279
11 H -0.270 1.270
12 H -0.278 1.278
13 O -0.345 6.345
14 C 0.446 3.554
15 O -0.505 6.505
16 C -0.123 4.123
17 C 0.218 3.782
18 H 0.109 0.891
19 N -0.727 5.727
20 C 0.716 3.284
21 N -0.870 5.870
22 O -0.591 6.591
23 C -0.093 4.093
24 C -0.103 4.103
25 C -0.124 4.124
26 C -0.121 4.121
27 C -0.121 4.121
28 C -0.098 4.098
29 H 0.054 0.946
30 H 0.039 0.961
31 H 0.039 0.961
32 H 0.078 0.922
33 H 0.061 0.939
34 H 0.271 0.729
35 H 0.105 0.895
36 H 0.118 0.882
37 H 0.394 0.606
38 H 0.395 0.605
39 H 0.412 0.588
40 H 0.118 0.882
41 H 0.120 0.880
42 H 0.119 0.881
43 H 0.122 0.878
44 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.287 4.722 13.266 23.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.186 4.186
3 C 0.148 3.852
4 H 0.056 0.944
5 C -0.645 4.645
6 H 0.086 0.914
7 C -0.167 4.167
8 N -0.527 5.527
9 Si 0.864 3.136
10 H -0.205 1.205
11 H -0.196 1.196
12 H -0.204 1.204
13 O -0.261 6.261
14 C 0.288 3.712
15 O -0.394 6.394
16 C -0.161 4.161
17 C 0.112 3.888
18 H 0.127 0.873
19 N -0.382 5.382
20 C 0.414 3.586
21 N -0.437 5.437
22 O -0.469 6.469
23 C -0.095 4.095
24 C -0.121 4.121
25 C -0.142 4.142
26 C -0.139 4.139
27 C -0.139 4.139
28 C -0.116 4.116
29 H 0.073 0.927
30 H 0.058 0.942
31 H 0.058 0.942
32 H 0.096 0.904
33 H 0.079 0.921
34 H 0.082 0.918
35 H 0.123 0.877
36 H 0.137 0.863
37 H 0.227 0.773
38 H 0.222 0.778
39 H 0.244 0.756
40 H 0.136 0.864
41 H 0.138 0.862
42 H 0.137 0.863
43 H 0.140 0.860
44 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -18.286 5.146 10.989 21.946
hybrid contribution -0.276 -0.323 1.766 1.816
sum -18.561 4.823 12.755 23.032
Atomic orbital electron populations
1.21876 0.97502 0.99601 1.01313 1.22429 0.93727 0.99489 1.02925
1.20893 0.96155 0.87961 0.80149 0.94428 1.21945 0.88741 1.49205
1.04598 0.91392 1.25653 0.97393 0.92577 1.01043 1.70861 1.07406
1.40596 1.33850 0.84173 0.75563 0.77819 0.76078 1.20456 1.19594
1.20411 1.86533 1.34227 1.62349 1.42982 1.23208 0.80920 0.77436
0.89629 1.90661 1.55642 1.58044 1.35077 1.21682 0.96734 1.01763
0.95933 1.19398 0.84876 0.88597 0.95964 0.87315 1.44875 1.22177
1.13669 1.57465 1.15796 0.79978 0.84138 0.78703 1.42942 1.23927
1.16753 1.60103 1.90947 1.79596 1.23295 1.53044 1.20182 1.00031
0.94120 0.95157 1.20910 0.98835 0.99711 0.92661 1.21102 1.00574
0.94220 0.98309 1.21152 0.99928 0.94690 0.98134 1.21138 0.99452
0.99909 0.93364 1.21082 0.98756 0.93215 0.98578 0.92685 0.94200
0.94184 0.90356 0.92071 0.91823 0.87697 0.86348 0.77281 0.77811
0.75600 0.86368 0.86216 0.86279 0.86005 0.85689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.68 8.56 37.16 0.32 -2.37 16
2 C -0.15 -3.24 5.33 -26.73 -0.14 -3.38 16
3 C 0.20 4.96 1.84 -27.88 -0.05 4.91 16
4 H 0.04 0.98 5.83 -51.93 -0.30 0.68 16
5 C -0.61 -17.13 9.17 -34.44 -0.32 -17.45 16
6 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16
7 C 0.04 1.13 5.32 -17.82 -0.09 1.03 16
8 N -0.89 -26.80 13.70 55.43 0.76 -26.04 16
9 Si 1.04 24.94 26.28 -169.99 -4.47 20.47 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.27 -5.96 5.64 56.52 0.32 -5.64 16
12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
13 O -0.35 -7.55 9.80 -39.25 -0.38 -7.93 16
14 C 0.45 8.10 6.26 36.01 0.23 8.33 16
15 O -0.51 -10.29 12.50 -18.75 -0.23 -10.52 16
16 C -0.12 -1.56 5.28 -27.88 -0.15 -1.70 16
17 C 0.22 2.78 1.77 -69.08 -0.12 2.66 16
18 H 0.11 1.71 7.13 -51.93 -0.37 1.34 16
19 N -0.73 -8.69 3.67 -59.81 -0.22 -8.90 16
20 C 0.72 9.92 8.79 -86.92 -0.76 9.15 16
21 N -0.87 -8.09 8.88 27.63 0.25 -7.84 16
22 O -0.59 -10.89 16.81 5.29 0.09 -10.80 16
23 C -0.09 -1.07 4.91 -104.62 -0.51 -1.58 16
24 C -0.10 -1.01 9.28 -39.58 -0.37 -1.38 16
25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16
26 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16
27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16
28 C -0.10 -1.11 9.67 -39.59 -0.38 -1.49 16
29 H 0.05 1.07 7.77 -51.93 -0.40 0.67 16
30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.04 0.68 6.07 -51.93 -0.31 0.37 16
32 H 0.08 1.78 4.73 -51.93 -0.25 1.54 16
33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
34 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16
35 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16
36 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16
37 H 0.39 3.74 8.62 -40.82 -0.35 3.39 16
38 H 0.39 2.46 8.85 -40.82 -0.36 2.09 16
39 H 0.41 3.41 8.93 -40.82 -0.36 3.04 16
40 H 0.12 0.96 7.88 -52.48 -0.41 0.55 16
41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16
43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
44 H 0.13 1.36 8.00 -52.48 -0.42 0.94 16
LS Contribution 365.14 15.07 5.50 5.50
Total: -1.00 -35.62 365.14 -8.43 -44.05
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: -6.17 Total: 9.90 kcal
Atomic # 6 Polarization: -4.32 SS G_CDS: -3.55 Total: -7.87 kcal
Atomic # 7 Polarization: -43.57 SS G_CDS: 0.79 Total: -42.79 kcal
Atomic # 8 Polarization: -28.73 SS G_CDS: -0.53 Total: -29.26 kcal
Atomic # 14 Polarization: 24.94 SS G_CDS: -4.47 Total: 20.47 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -35.62 -8.43 -44.05 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787089950.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.528 kcal
(2) G-P(sol) polarization free energy of solvation -35.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds