Wall clock time and date at job start Tue Mar 31 2020 12:28:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47088 * 2 1
4 4 H 1.09005 * 109.47120 * 304.58812 * 3 2 1
5 5 C 1.50708 * 109.47237 * 184.59438 * 3 2 1
6 6 H 1.08000 * 119.99782 * 245.61424 * 5 3 2
7 7 C 1.37874 * 120.00341 * 65.60974 * 5 3 2
8 8 N 1.31512 * 120.00060 * 196.33489 * 7 5 3
9 9 Si 1.86808 * 119.99737 * 16.33644 * 7 5 3
10 10 H 1.48502 * 109.46951 * 179.97438 * 9 7 5
11 11 H 1.48501 * 109.47054 * 300.00062 * 9 7 5
12 12 H 1.48492 * 109.46881 * 60.00097 * 9 7 5
13 13 O 1.45196 * 109.47297 * 64.58979 * 3 2 1
14 14 C 1.34227 * 117.00141 * 270.00340 * 13 3 2
15 15 O 1.20823 * 119.99881 * 359.97438 * 14 13 3
16 16 C 1.50706 * 119.99643 * 179.97438 * 14 13 3
17 17 C 1.53006 * 109.46677 * 179.97438 * 16 14 13
18 18 H 1.09000 * 109.47176 * 304.99677 * 17 16 14
19 19 N 1.46500 * 109.47099 * 65.00033 * 17 16 14
20 20 C 1.34776 * 119.99809 * 205.15319 * 19 17 16
21 21 N 1.34779 * 119.99547 * 184.74706 * 20 19 17
22 22 O 1.21587 * 120.00116 * 4.75247 * 20 19 17
23 23 C 1.50702 * 109.46864 * 185.00112 * 17 16 14
24 24 C 1.38236 * 119.99720 * 285.28895 * 23 17 16
25 25 C 1.38238 * 119.99721 * 179.79042 * 24 23 17
26 26 C 1.38229 * 119.99655 * 0.44044 * 25 24 23
27 27 C 1.38236 * 120.00574 * 359.81504 * 26 25 24
28 28 C 1.38228 * 120.00039 * 105.56538 * 23 17 16
29 29 H 1.08998 * 109.47038 * 60.00210 * 1 2 3
30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47440 * 299.99775 * 1 2 3
32 32 H 1.09002 * 109.47234 * 240.00320 * 2 1 3
33 33 H 1.09001 * 109.47537 * 119.99825 * 2 1 3
34 34 H 0.96992 * 120.00324 * 354.88780 * 8 7 5
35 35 H 1.08996 * 109.47412 * 299.99727 * 16 14 13
36 36 H 1.09003 * 109.47095 * 60.00092 * 16 14 13
37 37 H 0.97002 * 119.99897 * 25.15685 * 19 17 16
38 38 H 0.96998 * 120.00222 * 0.02562 * 21 20 19
39 39 H 0.97003 * 119.99512 * 179.97438 * 21 20 19
40 40 H 1.08005 * 120.00037 * 359.97438 * 24 23 17
41 41 H 1.08000 * 119.99840 * 180.27358 * 25 24 23
42 42 H 1.08009 * 119.99641 * 179.83152 * 26 25 24
43 43 H 1.07994 * 120.00241 * 180.02562 * 27 26 25
44 44 H 1.08004 * 120.00268 * 359.97438 * 28 23 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6110 1.9795 -0.8461
5 6 3.5427 1.4440 -0.1138
6 1 4.1459 1.8079 0.7049
7 6 4.1476 0.9809 -1.2630
8 7 5.4274 0.6782 -1.2563
9 14 3.1492 0.7835 -2.8295
10 1 4.0260 0.2742 -3.9144
11 1 2.0430 -0.1787 -2.5935
12 1 2.5852 2.0987 -3.2259
13 8 1.6475 2.0946 1.2365
14 6 0.4643 2.7284 1.2423
15 8 -0.2206 2.7382 0.2470
16 6 -0.0099 3.4275 2.4903
17 6 -1.3763 4.0647 2.2300
18 1 -1.3118 4.7210 1.3620
19 7 -2.3647 3.0138 1.9752
20 6 -3.4657 3.2863 1.2474
21 7 -4.4209 2.3480 1.0932
22 8 -3.5974 4.3786 0.7298
23 6 -1.7947 4.8662 3.4356
24 6 -2.2375 4.2207 4.5750
25 6 -2.6171 4.9558 5.6825
26 6 -2.5626 6.3365 5.6473
27 6 -2.1249 6.9822 4.5061
28 6 -1.7411 6.2470 3.4002
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 5.9623 0.8501 -0.4657
35 1 -0.0943 2.7049 3.3019
36 1 0.7053 4.2024 2.7666
37 1 -2.2266 2.1217 2.3305
38 1 -4.3160 1.4767 1.5064
39 1 -5.2135 2.5443 0.5696
40 1 -2.2840 3.1419 4.6010
41 1 -2.9589 4.4513 6.5742
42 1 -2.8619 6.9109 6.5117
43 1 -2.0820 8.0610 4.4789
44 1 -1.3991 6.7515 2.5086
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787089950.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:30
Heat of formation + Delta-G solvation = -127.864018 kcal
Electronic energy + Delta-G solvation = -27527.437555 eV
Core-core repulsion = 23636.402751 eV
Total energy + Delta-G solvation = -3891.034804 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 2.02 seconds
Orbital eigenvalues (eV)
-41.79608 -40.88539 -39.84521 -37.93005 -36.33884 -35.52546 -34.69946 -33.87648
-32.23111 -31.72367 -30.93922 -29.41803 -25.97074 -24.40346 -23.59097 -22.91349
-22.56472 -21.54573 -21.13970 -19.93688 -19.28660 -18.78712 -18.31500 -17.63983
-17.35761 -16.99684 -16.48221 -16.10264 -15.88206 -15.63746 -15.31764 -15.20190
-14.99090 -14.73645 -14.55609 -14.23278 -14.18245 -14.03365 -13.76524 -13.37708
-13.14929 -12.97672 -12.74191 -12.64278 -12.41375 -12.12524 -11.91966 -11.86155
-11.56933 -11.53217 -11.42433 -11.19779 -10.85220 -10.67599 -10.57953 -10.09202
-9.78401 -9.65070 -8.93850 -6.56151 0.39181 0.53507 1.34536 1.37031
1.44559 1.62656 1.94262 1.98427 2.25983 2.32913 2.89492 2.90405
3.58988 3.63895 3.71983 3.92981 4.09453 4.16882 4.19389 4.20671
4.26715 4.32212 4.42478 4.51302 4.59754 4.63112 4.69771 4.82364
5.02005 5.07848 5.09757 5.13591 5.17717 5.41197 5.42779 5.51230
5.58621 5.64478 5.69802 5.85638 5.91151 5.99913 6.06403 6.13016
6.40072 6.96362 7.11147 7.22178 7.71070 8.48195
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017139 B = 0.003550 C = 0.003212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1633.265078 B = 7885.379103 C = 8715.332490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.144 4.144
3 C 0.204 3.796
4 H 0.024 0.976
5 C -0.617 4.617
6 H 0.031 0.969
7 C -0.003 4.003
8 N -0.921 5.921
9 Si 1.070 2.930
10 H -0.274 1.274
11 H -0.236 1.236
12 H -0.275 1.275
13 O -0.360 6.360
14 C 0.444 3.556
15 O -0.526 6.526
16 C -0.109 4.109
17 C 0.226 3.774
18 H 0.071 0.929
19 N -0.718 5.718
20 C 0.707 3.293
21 N -0.849 5.849
22 O -0.644 6.644
23 C -0.105 4.105
24 C -0.106 4.106
25 C -0.126 4.126
26 C -0.123 4.123
27 C -0.129 4.129
28 C -0.122 4.122
29 H 0.042 0.958
30 H 0.072 0.928
31 H 0.050 0.950
32 H 0.069 0.931
33 H 0.061 0.939
34 H 0.259 0.741
35 H 0.141 0.859
36 H 0.131 0.869
37 H 0.408 0.592
38 H 0.413 0.587
39 H 0.419 0.581
40 H 0.138 0.862
41 H 0.146 0.854
42 H 0.144 0.856
43 H 0.137 0.863
44 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.912 3.637 14.962 25.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.182 4.182
3 C 0.150 3.850
4 H 0.042 0.958
5 C -0.655 4.655
6 H 0.049 0.951
7 C -0.203 4.203
8 N -0.555 5.555
9 Si 0.890 3.110
10 H -0.200 1.200
11 H -0.160 1.160
12 H -0.200 1.200
13 O -0.276 6.276
14 C 0.288 3.712
15 O -0.416 6.416
16 C -0.147 4.147
17 C 0.119 3.881
18 H 0.089 0.911
19 N -0.374 5.374
20 C 0.405 3.595
21 N -0.418 5.418
22 O -0.526 6.526
23 C -0.107 4.107
24 C -0.124 4.124
25 C -0.144 4.144
26 C -0.141 4.141
27 C -0.147 4.147
28 C -0.140 4.140
29 H 0.062 0.938
30 H 0.091 0.909
31 H 0.069 0.931
32 H 0.088 0.912
33 H 0.080 0.920
34 H 0.068 0.932
35 H 0.159 0.841
36 H 0.149 0.851
37 H 0.244 0.756
38 H 0.243 0.757
39 H 0.251 0.749
40 H 0.156 0.844
41 H 0.164 0.836
42 H 0.162 0.838
43 H 0.155 0.845
44 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -20.933 4.008 12.736 24.829
hybrid contribution 0.533 0.110 1.361 1.466
sum -20.399 4.118 14.097 25.136
Atomic orbital electron populations
1.21768 0.94452 1.01721 1.01289 1.22293 0.96381 0.97034 1.02520
1.20591 0.93623 0.89842 0.80964 0.95822 1.22126 0.91102 1.48670
1.03559 0.95082 1.26940 0.97539 0.91858 1.03963 1.70966 1.08414
1.42715 1.33408 0.83774 0.75516 0.78880 0.72789 1.19959 1.15998
1.20023 1.86513 1.36454 1.63148 1.41519 1.24177 0.79387 0.76511
0.91138 1.90656 1.55909 1.58600 1.36421 1.21781 0.96693 1.02303
0.93886 1.19158 0.85074 0.88401 0.95429 0.91056 1.44744 1.21459
1.14181 1.56994 1.16080 0.80805 0.84047 0.78564 1.42736 1.22964
1.16704 1.59391 1.90914 1.80743 1.25719 1.55189 1.20045 1.01518
0.93951 0.95170 1.21146 0.98231 1.00846 0.92164 1.21468 0.99653
0.94355 0.98891 1.21518 0.98885 0.95207 0.98457 1.21378 0.99260
1.00818 0.93249 1.21203 1.00002 0.93737 0.99086 0.93841 0.90948
0.93100 0.91231 0.92043 0.93172 0.84108 0.85065 0.75596 0.75693
0.74862 0.84379 0.83598 0.83841 0.84548 0.86712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.58 8.56 71.98 0.62 -3.96 16
2 C -0.14 -6.11 5.33 30.59 0.16 -5.94 16
3 C 0.20 10.00 1.84 29.85 0.05 10.05 16
4 H 0.02 1.24 5.83 -2.38 -0.01 1.22 16
5 C -0.62 -35.75 9.17 25.60 0.23 -35.52 16
6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16
7 C 0.00 -0.15 5.32 84.65 0.45 0.30 16
8 N -0.92 -56.65 13.70 21.45 0.29 -56.36 16
9 Si 1.07 50.01 26.28 68.60 1.80 51.81 16
10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16
11 H -0.24 -9.70 5.64 99.48 0.56 -9.14 16
12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16
13 O -0.36 -15.62 9.80 -51.38 -0.50 -16.12 16
14 C 0.44 15.72 6.26 71.24 0.45 16.16 16
15 O -0.53 -21.11 12.50 21.97 0.27 -20.83 16
16 C -0.11 -2.58 5.28 29.85 0.16 -2.42 16
17 C 0.23 5.60 1.77 44.25 0.08 5.68 16
18 H 0.07 2.33 7.13 -2.39 -0.02 2.32 16
19 N -0.72 -15.93 3.67 -461.40 -1.69 -17.63 16
20 C 0.71 18.85 8.79 179.05 1.57 20.42 16
21 N -0.85 -14.02 8.88 -184.74 -1.64 -15.66 16
22 O -0.64 -24.02 16.81 -3.99 -0.07 -24.09 16
23 C -0.11 -2.29 4.91 -19.87 -0.10 -2.38 16
24 C -0.11 -1.79 9.28 22.27 0.21 -1.58 16
25 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16
26 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16
27 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16
28 C -0.12 -2.74 9.67 22.27 0.22 -2.53 16
29 H 0.04 1.58 7.77 -2.39 -0.02 1.56 16
30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
31 H 0.05 1.59 6.07 -2.39 -0.01 1.57 16
32 H 0.07 3.03 4.73 -2.39 -0.01 3.02 16
33 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16
34 H 0.26 16.07 8.73 -92.71 -0.81 15.26 16
35 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16
36 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16
37 H 0.41 6.52 8.62 -92.71 -0.80 5.72 16
38 H 0.41 3.86 8.85 -92.71 -0.82 3.04 16
39 H 0.42 6.16 8.93 -92.71 -0.83 5.33 16
40 H 0.14 1.69 7.88 -2.91 -0.02 1.67 16
41 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16
42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16
43 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16
44 H 0.11 2.68 8.00 -2.91 -0.02 2.65 16
Total: -1.00 -80.88 365.14 1.67 -79.21
By element:
Atomic # 1 Polarization: 28.40 SS G_CDS: -1.57 Total: 26.82 kcal
Atomic # 6 Polarization: -11.93 SS G_CDS: 4.77 Total: -7.16 kcal
Atomic # 7 Polarization: -86.60 SS G_CDS: -3.04 Total: -89.64 kcal
Atomic # 8 Polarization: -60.75 SS G_CDS: -0.30 Total: -61.04 kcal
Atomic # 14 Polarization: 50.01 SS G_CDS: 1.80 Total: 51.81 kcal
Total: -80.88 1.67 -79.21 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787089950.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.651 kcal
(2) G-P(sol) polarization free energy of solvation -80.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.02 seconds