Wall clock time and date at job start Tue Mar 31 2020 12:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 H 1.09001 * 109.46929 * 55.00417 * 3 2 1 5 5 C 1.50697 * 109.47083 * 175.00223 * 3 2 1 6 6 H 1.07993 * 120.00328 * 120.00522 * 5 3 2 7 7 C 1.37876 * 119.99710 * 299.99838 * 5 3 2 8 8 N 1.31518 * 120.00262 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00076 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47247 * 89.99994 * 9 7 5 11 11 H 1.48499 * 109.47508 * 210.00577 * 9 7 5 12 12 H 1.48505 * 109.46875 * 330.00401 * 9 7 5 13 13 O 1.45198 * 109.47146 * 295.00211 * 3 2 1 14 14 C 1.34230 * 117.00369 * 90.00121 * 13 3 2 15 15 O 1.20828 * 119.99760 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00669 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47631 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47040 * 304.99908 * 17 16 14 19 19 N 1.46495 * 109.47060 * 65.00076 * 17 16 14 20 20 C 1.34777 * 120.00048 * 202.72252 * 19 17 16 21 21 N 1.34777 * 120.00083 * 185.38832 * 20 19 17 22 22 O 1.21589 * 119.99995 * 5.37843 * 20 19 17 23 23 C 1.50700 * 109.47159 * 185.00039 * 17 16 14 24 24 C 1.38236 * 119.99935 * 285.21354 * 23 17 16 25 25 C 1.38239 * 120.00106 * 179.79036 * 24 23 17 26 26 C 1.38236 * 119.99360 * 0.44056 * 25 24 23 27 27 C 1.38234 * 120.00437 * 359.81087 * 26 25 24 28 28 C 1.38226 * 120.00142 * 105.48693 * 23 17 16 29 29 H 1.08999 * 109.47523 * 59.99520 * 1 2 3 30 30 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47279 * 299.99724 * 1 2 3 32 32 H 1.08997 * 109.46957 * 240.00272 * 2 1 3 33 33 H 1.08998 * 109.47058 * 120.00220 * 2 1 3 34 34 H 0.96998 * 119.99596 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46895 * 300.00120 * 16 14 13 36 36 H 1.09005 * 109.47090 * 59.99413 * 16 14 13 37 37 H 0.97006 * 120.00444 * 22.71380 * 19 17 16 38 38 H 0.97001 * 120.00054 * 359.97438 * 21 20 19 39 39 H 0.97004 * 120.00188 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00302 * 359.97438 * 24 23 17 41 41 H 1.07997 * 120.00290 * 180.27397 * 25 24 23 42 42 H 1.08003 * 119.99294 * 179.83284 * 26 25 24 43 43 H 1.08003 * 119.99853 * 180.02562 * 27 26 25 44 44 H 1.08005 * 120.00178 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3111 2.1544 12 1 6.6131 0.8395 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5082 17 6 -1.3615 4.0592 -2.2590 18 1 -2.0560 3.2991 -1.9012 19 7 -1.2327 5.1158 -1.2525 20 6 -2.3091 5.5016 -0.5389 21 7 -2.2169 6.5455 0.3085 22 8 -3.3633 4.9079 -0.6599 23 6 -1.8820 4.6502 -3.5439 24 6 -1.3481 5.8297 -4.0283 25 6 -1.8226 6.3697 -5.2091 26 6 -2.8372 5.7348 -5.9007 27 6 -3.3747 4.5580 -5.4136 28 6 -2.8972 4.0159 -4.2350 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0618 2.9494 35 1 0.7244 4.1971 -2.7808 36 1 -0.0713 2.6986 -3.3193 37 1 -0.3727 5.5376 -1.0993 38 1 -1.3758 7.0189 0.4052 39 1 -2.9917 6.8234 0.8218 40 1 -0.5582 6.3280 -3.4858 41 1 -1.4024 7.2888 -5.5899 42 1 -3.2098 6.1580 -6.8219 43 1 -4.1672 4.0618 -5.9542 44 1 -3.3171 3.0965 -3.8545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:46 Heat of formation + Delta-G solvation = -104.044142 kcal Electronic energy + Delta-G solvation = -27342.676061 eV Core-core repulsion = 23452.674164 eV Total energy + Delta-G solvation = -3890.001897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.45269 -39.37732 -38.91520 -36.22223 -35.02583 -33.61397 -33.51453 -31.44269 -31.25261 -30.91784 -29.80938 -27.27506 -24.80549 -23.15246 -22.74430 -21.77821 -20.96243 -20.28609 -19.41706 -18.23692 -17.60164 -17.03309 -16.78217 -16.43845 -15.78813 -15.55150 -15.20554 -15.02584 -14.69535 -14.50750 -14.27015 -13.92423 -13.48254 -13.25196 -12.98236 -12.93977 -12.84571 -12.46240 -11.82700 -11.68713 -11.44041 -11.33810 -11.25580 -11.16549 -11.05317 -10.95695 -10.67040 -10.29980 -10.15664 -9.80017 -9.62845 -9.60369 -9.38012 -9.07668 -8.98457 -8.81198 -8.78626 -8.47669 -6.20828 -4.28287 1.21326 1.32209 2.94272 3.02688 3.21572 3.27530 3.30905 3.37704 3.53783 3.77996 4.29966 4.53841 4.72402 4.76085 4.82602 4.92559 5.03362 5.10876 5.19911 5.40138 5.44948 5.56356 5.76775 5.84743 5.87645 5.98453 6.23927 6.30317 6.35678 6.39709 6.41960 6.46728 6.59943 6.78430 6.86628 6.89492 6.97066 6.98443 7.16806 7.26446 7.59885 7.72576 7.94498 8.03749 8.14506 8.62297 8.75766 8.87563 9.37227 10.85708 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.003230 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.924299 B = 8666.257914 C = 9035.871389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.446 3.554 15 O -0.503 6.503 16 C -0.123 4.123 17 C 0.219 3.781 18 H 0.106 0.894 19 N -0.727 5.727 20 C 0.715 3.285 21 N -0.870 5.870 22 O -0.593 6.593 23 C -0.092 4.092 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.108 0.892 34 H 0.266 0.734 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.395 0.605 38 H 0.395 0.605 39 H 0.412 0.588 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 12.167 -12.132 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.288 3.712 15 O -0.393 6.393 16 C -0.162 4.162 17 C 0.113 3.887 18 H 0.124 0.876 19 N -0.382 5.382 20 C 0.414 3.586 21 N -0.437 5.437 22 O -0.471 6.471 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.229 0.771 38 H 0.223 0.777 39 H 0.244 0.756 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.077 11.415 -11.844 19.290 hybrid contribution 1.436 0.488 0.618 1.637 sum -8.641 11.903 -11.225 18.503 Atomic orbital electron populations 1.21846 0.98266 0.99001 1.00757 1.22017 0.92674 0.99395 1.03298 1.20644 0.94879 0.88768 0.78636 0.93596 1.21042 0.89755 1.39032 1.06191 0.91395 1.24889 0.99185 0.94765 0.95115 1.69895 1.35373 1.37736 1.09469 0.86301 0.83958 0.77690 0.78342 1.20452 1.20950 1.19592 1.86471 1.34254 1.62495 1.44165 1.23069 0.81138 0.77526 0.89443 1.90673 1.55117 1.57894 1.35570 1.21669 0.96480 1.01415 0.96594 1.19381 0.96137 0.89045 0.84177 0.87567 1.44878 1.10855 1.41509 1.40913 1.15803 0.84019 0.80280 0.78533 1.42943 1.17160 1.35413 1.48208 1.90939 1.28658 1.57204 1.70273 1.20203 0.96949 0.96022 0.96201 1.20927 0.99773 0.95499 0.95890 1.21102 0.97536 1.00031 0.95550 1.21141 0.97070 0.95892 0.99885 1.21127 1.00105 0.96313 0.96383 1.21070 0.95682 1.00035 0.94854 0.94949 0.94864 0.92852 0.94023 0.87421 0.92387 0.87705 0.86603 0.77112 0.77743 0.75645 0.86300 0.86241 0.86332 0.86064 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.16 0.32 -2.79 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.76 2.25 -27.88 -0.06 5.70 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.26 8.90 -34.44 -0.31 -14.56 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 O -0.36 -8.02 9.81 -39.26 -0.39 -8.40 16 14 C 0.45 8.47 6.28 36.00 0.23 8.70 16 15 O -0.50 -10.88 12.50 -18.75 -0.23 -11.12 16 16 C -0.12 -1.63 5.27 -27.89 -0.15 -1.78 16 17 C 0.22 2.94 1.75 -69.08 -0.12 2.82 16 18 H 0.11 1.74 7.20 -51.93 -0.37 1.36 16 19 N -0.73 -9.43 3.69 -59.81 -0.22 -9.65 16 20 C 0.72 10.58 8.76 -86.92 -0.76 9.82 16 21 N -0.87 -8.93 8.88 27.63 0.25 -8.69 16 22 O -0.59 -11.36 16.85 5.29 0.09 -11.27 16 23 C -0.09 -1.10 4.87 -104.63 -0.51 -1.61 16 24 C -0.10 -1.07 9.29 -39.58 -0.37 -1.44 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.10 -1.14 9.67 -39.59 -0.38 -1.52 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 38 H 0.40 2.88 8.85 -40.82 -0.36 2.52 16 39 H 0.41 3.76 8.93 -40.82 -0.36 3.39 16 40 H 0.12 1.05 7.88 -52.48 -0.41 0.64 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.39 8.00 -52.48 -0.42 0.97 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -34.28 369.66 -9.07 -43.35 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.19 Total: 12.00 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.55 Total: -3.30 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.65 Total: -42.46 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.53 Total: -30.79 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.28 -9.07 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.697 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds