Wall clock time and date at job start Tue Mar 31 2020 12:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47021 * 2 1 4 4 H 1.09001 * 109.46929 * 55.00417 * 3 2 1 5 5 C 1.50697 * 109.47083 * 175.00223 * 3 2 1 6 6 H 1.07993 * 120.00328 * 120.00522 * 5 3 2 7 7 C 1.37876 * 119.99710 * 299.99838 * 5 3 2 8 8 N 1.31518 * 120.00262 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00076 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47247 * 89.99994 * 9 7 5 11 11 H 1.48499 * 109.47508 * 210.00577 * 9 7 5 12 12 H 1.48505 * 109.46875 * 330.00401 * 9 7 5 13 13 O 1.45198 * 109.47146 * 295.00211 * 3 2 1 14 14 C 1.34230 * 117.00369 * 90.00121 * 13 3 2 15 15 O 1.20828 * 119.99760 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00669 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47631 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47040 * 304.99908 * 17 16 14 19 19 N 1.46495 * 109.47060 * 65.00076 * 17 16 14 20 20 C 1.34777 * 120.00048 * 202.72252 * 19 17 16 21 21 N 1.34777 * 120.00083 * 185.38832 * 20 19 17 22 22 O 1.21589 * 119.99995 * 5.37843 * 20 19 17 23 23 C 1.50700 * 109.47159 * 185.00039 * 17 16 14 24 24 C 1.38236 * 119.99935 * 285.21354 * 23 17 16 25 25 C 1.38239 * 120.00106 * 179.79036 * 24 23 17 26 26 C 1.38236 * 119.99360 * 0.44056 * 25 24 23 27 27 C 1.38234 * 120.00437 * 359.81087 * 26 25 24 28 28 C 1.38226 * 120.00142 * 105.48693 * 23 17 16 29 29 H 1.08999 * 109.47523 * 59.99520 * 1 2 3 30 30 H 1.08994 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47279 * 299.99724 * 1 2 3 32 32 H 1.08997 * 109.46957 * 240.00272 * 2 1 3 33 33 H 1.08998 * 109.47058 * 120.00220 * 2 1 3 34 34 H 0.96998 * 119.99596 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46895 * 300.00120 * 16 14 13 36 36 H 1.09005 * 109.47090 * 59.99413 * 16 14 13 37 37 H 0.97006 * 120.00444 * 22.71380 * 19 17 16 38 38 H 0.97001 * 120.00054 * 359.97438 * 21 20 19 39 39 H 0.97004 * 120.00188 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00302 * 359.97438 * 24 23 17 41 41 H 1.07997 * 120.00290 * 180.27397 * 25 24 23 42 42 H 1.08003 * 119.99294 * 179.83284 * 26 25 24 43 43 H 1.08003 * 119.99853 * 180.02562 * 27 26 25 44 44 H 1.08005 * 120.00178 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3111 2.1544 12 1 6.6131 0.8395 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5082 17 6 -1.3615 4.0592 -2.2590 18 1 -2.0560 3.2991 -1.9012 19 7 -1.2327 5.1158 -1.2525 20 6 -2.3091 5.5016 -0.5389 21 7 -2.2169 6.5455 0.3085 22 8 -3.3633 4.9079 -0.6599 23 6 -1.8820 4.6502 -3.5439 24 6 -1.3481 5.8297 -4.0283 25 6 -1.8226 6.3697 -5.2091 26 6 -2.8372 5.7348 -5.9007 27 6 -3.3747 4.5580 -5.4136 28 6 -2.8972 4.0159 -4.2350 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0618 2.9494 35 1 0.7244 4.1971 -2.7808 36 1 -0.0713 2.6986 -3.3193 37 1 -0.3727 5.5376 -1.0993 38 1 -1.3758 7.0189 0.4052 39 1 -2.9917 6.8234 0.8218 40 1 -0.5582 6.3280 -3.4858 41 1 -1.4024 7.2888 -5.5899 42 1 -3.2098 6.1580 -6.8219 43 1 -4.1672 4.0618 -5.9542 44 1 -3.3171 3.0965 -3.8545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:41 Heat of formation + Delta-G solvation = -126.848580 kcal Electronic energy + Delta-G solvation = -27343.664935 eV Core-core repulsion = 23452.674164 eV Total energy + Delta-G solvation = -3890.990771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = -0.92 seconds Orbital eigenvalues (eV) -41.71299 -40.82793 -39.82903 -37.81403 -36.30531 -35.47155 -34.70614 -33.37206 -32.22764 -31.70466 -30.89997 -29.22594 -26.04218 -24.98671 -23.55788 -22.79774 -22.48910 -21.50531 -21.07863 -19.33603 -18.93512 -18.53333 -18.29789 -17.50690 -17.21727 -17.08099 -16.46688 -16.30332 -16.02274 -15.65715 -15.32595 -15.19702 -14.78271 -14.61129 -14.32837 -14.18785 -14.05055 -13.58003 -13.35663 -13.28255 -13.22552 -13.00365 -12.78916 -12.64428 -12.53884 -12.14200 -12.08673 -11.84499 -11.74676 -11.44060 -11.41305 -11.19412 -10.79033 -10.69087 -10.51352 -10.08593 -9.76433 -9.62906 -8.25856 -6.42642 0.41286 0.55447 1.42537 1.43889 1.45801 1.55980 1.96402 2.04533 2.24332 2.43367 2.92141 3.03960 3.61421 3.66452 3.76549 3.95358 4.17422 4.20280 4.26433 4.34979 4.37066 4.39776 4.50518 4.61215 4.62720 4.71789 4.84588 4.85790 5.08999 5.09707 5.19662 5.22164 5.40328 5.43020 5.53673 5.60526 5.66101 5.68841 5.71053 5.90097 6.01578 6.04782 6.14731 6.19336 6.63722 7.06392 7.08936 7.30261 7.69005 8.80573 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.003230 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.924299 B = 8666.257914 C = 9035.871389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.229 3.771 4 H 0.007 0.993 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.979 3.021 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.262 1.262 13 O -0.364 6.364 14 C 0.442 3.558 15 O -0.532 6.532 16 C -0.107 4.107 17 C 0.225 3.775 18 H 0.070 0.930 19 N -0.721 5.721 20 C 0.706 3.294 21 N -0.850 5.850 22 O -0.643 6.643 23 C -0.105 4.105 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.120 4.120 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.269 0.731 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.407 0.593 38 H 0.412 0.588 39 H 0.419 0.581 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 13.711 -14.117 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.186 1.186 13 O -0.281 6.281 14 C 0.286 3.714 15 O -0.423 6.423 16 C -0.145 4.145 17 C 0.119 3.881 18 H 0.088 0.912 19 N -0.376 5.376 20 C 0.404 3.596 21 N -0.419 5.419 22 O -0.525 6.525 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.252 0.748 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.999 13.005 -13.831 21.010 hybrid contribution 1.024 0.070 1.222 1.596 sum -7.975 13.074 -12.610 19.838 Atomic orbital electron populations 1.21690 0.96457 1.00358 0.99986 1.21870 0.94207 0.98542 1.02215 1.20275 0.94346 0.89030 0.78808 0.97568 1.21346 0.90628 1.39755 1.06741 0.91412 1.25800 1.04097 0.93962 0.94481 1.70027 1.37404 1.38036 1.09904 0.85233 0.77900 0.77909 0.78684 1.19720 1.20420 1.18623 1.86460 1.36195 1.63130 1.42317 1.24159 0.79604 0.76616 0.90975 1.90671 1.55481 1.58784 1.37323 1.21767 0.96872 1.02100 0.93753 1.19188 0.95236 0.88532 0.85117 0.91204 1.44811 1.10994 1.41199 1.40578 1.16095 0.83662 0.80802 0.79039 1.42753 1.18345 1.34026 1.46801 1.90901 1.30570 1.59054 1.71937 1.20036 0.97908 0.97112 0.95555 1.21137 1.00132 0.94816 0.96457 1.21458 0.97214 1.00738 0.94965 1.21517 0.96581 0.95292 1.00628 1.21383 1.00495 0.96824 0.95886 1.21196 0.96347 1.00376 0.95936 0.94290 0.92366 0.94963 0.93561 0.89827 0.92176 0.84412 0.84476 0.75754 0.75766 0.74850 0.84711 0.83675 0.83755 0.84372 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.57 71.98 0.62 -5.08 16 2 C -0.13 -6.55 5.49 30.60 0.17 -6.38 16 3 C 0.23 12.13 2.25 29.85 0.07 12.20 16 4 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 5 C -0.55 -30.25 8.90 25.60 0.23 -30.02 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.62 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.06 11.29 21.45 0.24 -51.82 16 9 Si 0.98 42.06 29.54 68.60 2.03 44.09 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 13 O -0.36 -16.45 9.81 -51.42 -0.50 -16.96 16 14 C 0.44 16.88 6.28 71.23 0.45 17.33 16 15 O -0.53 -23.75 12.50 21.96 0.27 -23.47 16 16 C -0.11 -2.71 5.27 29.85 0.16 -2.55 16 17 C 0.23 6.05 1.75 44.25 0.08 6.12 16 18 H 0.07 2.40 7.20 -2.39 -0.02 2.39 16 19 N -0.72 -18.46 3.69 -461.42 -1.70 -20.17 16 20 C 0.71 21.02 8.76 179.05 1.57 22.58 16 21 N -0.85 -16.89 8.88 -184.74 -1.64 -18.53 16 22 O -0.64 -25.47 16.85 -4.00 -0.07 -25.54 16 23 C -0.10 -2.41 4.87 -19.87 -0.10 -2.51 16 24 C -0.11 -1.98 9.29 22.27 0.21 -1.78 16 25 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 26 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 28 C -0.12 -2.77 9.67 22.27 0.22 -2.56 16 29 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.54 7.80 -2.38 -0.02 1.52 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 4.62 5.95 -2.39 -0.01 4.61 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 37 H 0.41 8.30 8.60 -92.70 -0.80 7.50 16 38 H 0.41 5.41 8.85 -92.71 -0.82 4.59 16 39 H 0.42 7.38 8.93 -92.71 -0.83 6.55 16 40 H 0.14 1.97 7.88 -2.91 -0.02 1.95 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.12 2.74 8.00 -2.91 -0.02 2.71 16 Total: -1.00 -77.05 369.66 2.01 -75.04 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -1.39 Total: 34.32 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.77 Total: 3.03 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.10 Total: -90.51 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -0.30 Total: -65.97 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -77.05 2.01 -75.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.804 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.92 seconds