Wall clock time and date at job start Tue Mar 31 2020 12:28:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47213 * 2 1
4 4 H 1.08998 * 109.47044 * 55.00270 * 3 2 1
5 5 C 1.50698 * 109.47436 * 175.00327 * 3 2 1
6 6 H 1.07999 * 120.00360 * 119.99496 * 5 3 2
7 7 C 1.37882 * 119.99721 * 300.00510 * 5 3 2
8 8 N 1.31513 * 120.00136 * 359.97438 * 7 5 3
9 9 Si 1.86805 * 119.99897 * 179.97438 * 7 5 3
10 10 H 1.48498 * 109.47261 * 59.99916 * 9 7 5
11 11 H 1.48501 * 109.46815 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47192 * 299.99874 * 9 7 5
13 13 O 1.45203 * 109.47195 * 295.00260 * 3 2 1
14 14 C 1.34232 * 117.00080 * 90.00139 * 13 3 2
15 15 O 1.20827 * 119.99519 * 359.97438 * 14 13 3
16 16 C 1.50695 * 120.00136 * 180.02562 * 14 13 3
17 17 C 1.53003 * 109.47192 * 179.97438 * 16 14 13
18 18 H 1.08998 * 109.47374 * 54.99725 * 17 16 14
19 19 N 1.46502 * 109.46805 * 294.99656 * 17 16 14
20 20 C 1.34772 * 119.99817 * 154.65481 * 19 17 16
21 21 N 1.34775 * 120.00015 * 184.97362 * 20 19 17
22 22 O 1.21596 * 120.00007 * 4.97625 * 20 19 17
23 23 C 1.50701 * 109.47098 * 174.99987 * 17 16 14
24 24 C 1.38234 * 119.99860 * 78.73865 * 23 17 16
25 25 C 1.38241 * 119.99610 * 179.79193 * 24 23 17
26 26 C 1.38238 * 120.00090 * 0.43136 * 25 24 23
27 27 C 1.38240 * 119.99696 * 359.82184 * 26 25 24
28 28 C 1.38233 * 119.99743 * 259.01315 * 23 17 16
29 29 H 1.08998 * 109.47316 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46943 * 299.99866 * 1 2 3
31 31 H 1.09007 * 109.47413 * 59.99571 * 1 2 3
32 32 H 1.09000 * 109.46943 * 240.00134 * 2 1 3
33 33 H 1.08992 * 109.47405 * 120.00392 * 2 1 3
34 34 H 0.96998 * 120.00309 * 179.97438 * 8 7 5
35 35 H 1.09006 * 109.47118 * 299.99916 * 16 14 13
36 36 H 1.09001 * 109.47489 * 59.99497 * 16 14 13
37 37 H 0.97001 * 120.00215 * 334.65947 * 19 17 16
38 38 H 0.96990 * 120.00179 * 0.02562 * 21 20 19
39 39 H 0.97002 * 120.00113 * 180.02562 * 21 20 19
40 40 H 1.08000 * 120.00188 * 359.97438 * 24 23 17
41 41 H 1.07994 * 119.99784 * 180.27672 * 25 24 23
42 42 H 1.07994 * 119.99875 * 179.83339 * 26 25 24
43 43 H 1.07998 * 119.99762 * 179.97438 * 27 26 25
44 44 H 1.08003 * 119.99973 * 359.97438 * 28 23 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4443 0.1237
6 1 4.1472 1.8888 -0.6524
7 6 4.1433 0.8783 1.2279
8 7 3.4063 0.3373 2.1732
9 14 6.0051 0.8799 1.3810
10 1 6.5005 2.2798 1.3807
11 1 6.3979 0.2165 2.6502
12 1 6.5967 0.1452 0.2341
13 8 1.6558 2.0917 -1.2407
14 6 0.4727 2.7255 -1.2559
15 8 -0.2192 2.7370 -0.2654
16 6 0.0069 3.4217 -2.5086
17 6 -1.3618 4.0585 -2.2593
18 1 -1.3039 4.7166 -1.3923
19 7 -2.3512 3.0074 -2.0094
20 6 -3.4557 3.2797 -1.2866
21 7 -4.3156 2.2908 -0.9716
22 8 -3.6764 4.4174 -0.9188
23 6 -1.7722 4.8572 -3.4696
24 6 -2.2850 4.2141 -4.5806
25 6 -2.6655 4.9472 -5.6892
26 6 -2.5249 6.3224 -5.6900
27 6 -2.0072 6.9649 -4.5808
28 6 -1.6307 6.2322 -3.4707
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 3.8293 -0.0613 2.9497
35 1 0.7239 4.1959 -2.7820
36 1 -0.0721 2.6971 -3.3191
37 1 -2.2114 2.1154 -2.3640
38 1 -4.1394 1.3832 -1.2646
39 1 -5.1107 2.4868 -0.4517
40 1 -2.3911 3.1394 -4.5815
41 1 -3.0702 4.4452 -6.5555
42 1 -2.8196 6.8948 -6.5571
43 1 -1.8970 8.0392 -4.5816
44 1 -1.2263 6.7342 -2.6041
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787089953.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:51
Heat of formation + Delta-G solvation = -103.711041 kcal
Electronic energy + Delta-G solvation = -27427.096331 eV
Core-core repulsion = 23537.108879 eV
Total energy + Delta-G solvation = -3889.987452 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.45868 -39.38182 -38.90648 -36.22701 -35.03630 -33.61981 -33.52285 -31.49492
-31.24827 -30.87844 -29.80876 -27.30264 -24.80344 -23.16280 -22.74441 -21.76382
-20.96292 -20.33796 -19.43536 -18.24414 -17.59856 -17.03635 -16.77447 -16.46336
-15.81320 -15.54746 -15.17666 -15.02723 -14.64638 -14.49925 -14.25870 -13.91155
-13.46973 -13.30619 -13.23124 -12.87352 -12.66903 -12.49905 -11.98123 -11.58767
-11.45442 -11.36477 -11.25685 -11.17836 -11.04993 -10.95828 -10.69833 -10.30908
-10.17123 -9.84564 -9.65841 -9.60075 -9.39010 -9.07100 -8.96644 -8.84697
-8.76778 -8.47589 -6.20724 -4.27980 1.23922 1.34018 2.92498 3.01169
3.24562 3.28289 3.30051 3.39006 3.53489 3.79339 4.30719 4.53861
4.74639 4.75937 4.82961 4.93941 5.04655 5.11265 5.18400 5.41860
5.46109 5.57214 5.75624 5.84340 5.89051 5.98971 6.15159 6.21562
6.37180 6.39305 6.39632 6.42919 6.59922 6.78061 6.81287 6.91111
6.91682 6.98483 7.11964 7.22720 7.59214 7.70849 7.93104 8.02986
8.13547 8.61795 8.75259 8.87089 9.37510 10.85901
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.016692 B = 0.003350 C = 0.002983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.058656 B = 8355.656022 C = 9383.816570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.136 4.136
3 C 0.223 3.777
4 H 0.047 0.953
5 C -0.523 4.523
6 H 0.068 0.932
7 C 0.063 3.937
8 N -0.888 5.888
9 Si 0.911 3.089
10 H -0.274 1.274
11 H -0.285 1.285
12 H -0.274 1.274
13 O -0.357 6.357
14 C 0.447 3.553
15 O -0.505 6.505
16 C -0.124 4.124
17 C 0.219 3.781
18 H 0.107 0.893
19 N -0.727 5.727
20 C 0.716 3.284
21 N -0.869 5.869
22 O -0.593 6.593
23 C -0.089 4.089
24 C -0.103 4.103
25 C -0.124 4.124
26 C -0.123 4.123
27 C -0.120 4.120
28 C -0.099 4.099
29 H 0.031 0.969
30 H 0.052 0.948
31 H 0.030 0.970
32 H 0.041 0.959
33 H 0.108 0.892
34 H 0.267 0.733
35 H 0.117 0.883
36 H 0.104 0.896
37 H 0.394 0.606
38 H 0.395 0.605
39 H 0.412 0.588
40 H 0.118 0.882
41 H 0.119 0.881
42 H 0.118 0.882
43 H 0.121 0.879
44 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.623 4.764 -14.170 19.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.174 4.174
3 C 0.171 3.829
4 H 0.064 0.936
5 C -0.561 4.561
6 H 0.086 0.914
7 C -0.139 4.139
8 N -0.526 5.526
9 Si 0.738 3.262
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.199 1.199
13 O -0.274 6.274
14 C 0.289 3.711
15 O -0.394 6.394
16 C -0.162 4.162
17 C 0.113 3.887
18 H 0.124 0.876
19 N -0.381 5.381
20 C 0.415 3.585
21 N -0.436 5.436
22 O -0.471 6.471
23 C -0.090 4.090
24 C -0.122 4.122
25 C -0.142 4.142
26 C -0.141 4.141
27 C -0.138 4.138
28 C -0.118 4.118
29 H 0.050 0.950
30 H 0.071 0.929
31 H 0.049 0.951
32 H 0.059 0.941
33 H 0.126 0.874
34 H 0.077 0.923
35 H 0.135 0.865
36 H 0.122 0.878
37 H 0.227 0.773
38 H 0.223 0.777
39 H 0.244 0.756
40 H 0.136 0.864
41 H 0.137 0.863
42 H 0.136 0.864
43 H 0.139 0.861
44 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -12.791 5.652 -13.388 19.359
hybrid contribution 0.702 -0.975 0.139 1.210
sum -12.088 4.677 -13.249 18.535
Atomic orbital electron populations
1.21831 0.98447 0.98759 1.00603 1.22011 0.92580 0.99458 1.03310
1.20638 0.94934 0.88666 0.78693 0.93554 1.21013 0.89765 1.39075
1.06256 0.91409 1.24883 0.99221 0.94753 0.95048 1.69873 1.35486
1.37747 1.09462 0.86348 0.83907 0.78517 0.77461 1.19972 1.21047
1.19939 1.86474 1.34240 1.62509 1.44139 1.23070 0.81100 0.77478
0.89440 1.90663 1.55245 1.57934 1.35539 1.21684 0.96601 1.01763
0.96156 1.19384 0.84920 0.88480 0.95872 0.87553 1.44871 1.22038
1.13764 1.57466 1.15793 0.79812 0.84679 0.78262 1.42930 1.28066
1.10538 1.62101 1.90946 1.76478 1.20153 1.59554 1.20182 0.99494
0.94155 0.95204 1.20898 0.98722 0.99720 0.92811 1.21093 1.00557
0.94271 0.98255 1.21132 0.99880 0.94727 0.98341 1.21121 0.99327
0.99833 0.93554 1.21054 0.99105 0.93237 0.98403 0.94976 0.92865
0.95106 0.94057 0.87409 0.92330 0.86488 0.87804 0.77265 0.77745
0.75644 0.86409 0.86294 0.86352 0.86070 0.85748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.83 8.57 37.16 0.32 -2.51 16
2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16
3 C 0.22 5.73 2.25 -27.89 -0.06 5.67 16
4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16
5 C -0.52 -14.36 8.90 -34.44 -0.31 -14.66 16
6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16
7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16
8 N -0.89 -24.76 11.29 55.43 0.63 -24.13 16
9 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16
10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
13 O -0.36 -7.98 9.81 -39.26 -0.39 -8.36 16
14 C 0.45 8.43 6.28 36.00 0.23 8.66 16
15 O -0.50 -10.78 12.50 -18.75 -0.23 -11.01 16
16 C -0.12 -1.63 5.32 -27.88 -0.15 -1.78 16
17 C 0.22 2.94 1.70 -69.08 -0.12 2.83 16
18 H 0.11 1.74 7.31 -51.93 -0.38 1.36 16
19 N -0.73 -9.25 3.51 -59.81 -0.21 -9.46 16
20 C 0.72 10.50 8.79 -86.92 -0.76 9.74 16
21 N -0.87 -8.98 8.88 27.63 0.25 -8.74 16
22 O -0.59 -11.28 16.89 5.28 0.09 -11.19 16
23 C -0.09 -1.07 4.91 -104.62 -0.51 -1.59 16
24 C -0.10 -1.09 9.32 -39.58 -0.37 -1.46 16
25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16
26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16
27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16
28 C -0.10 -1.17 9.67 -39.58 -0.38 -1.55 16
29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16
31 H 0.03 0.57 6.06 -51.93 -0.31 0.26 16
32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16
33 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16
34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
35 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16
36 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16
37 H 0.39 4.09 8.63 -40.82 -0.35 3.73 16
38 H 0.40 2.97 8.85 -40.82 -0.36 2.60 16
39 H 0.41 3.78 8.93 -40.82 -0.36 3.42 16
40 H 0.12 1.06 7.76 -52.49 -0.41 0.65 16
41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16
42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16
44 H 0.12 1.38 8.03 -52.48 -0.42 0.96 16
LS Contribution 369.67 15.07 5.57 5.57
Total: -1.00 -34.12 369.67 -9.06 -43.18
By element:
Atomic # 1 Polarization: 17.80 SS G_CDS: -6.19 Total: 11.61 kcal
Atomic # 6 Polarization: 0.32 SS G_CDS: -3.55 Total: -3.23 kcal
Atomic # 7 Polarization: -42.99 SS G_CDS: 0.66 Total: -42.33 kcal
Atomic # 8 Polarization: -30.03 SS G_CDS: -0.53 Total: -30.56 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -34.12 -9.06 -43.18 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787089953.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.531 kcal
(2) G-P(sol) polarization free energy of solvation -34.117 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds