Wall clock time and date at job start Tue Mar 31 2020 12:28:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47213 * 2 1
4 4 H 1.08998 * 109.47044 * 55.00270 * 3 2 1
5 5 C 1.50698 * 109.47436 * 175.00327 * 3 2 1
6 6 H 1.07999 * 120.00360 * 119.99496 * 5 3 2
7 7 C 1.37882 * 119.99721 * 300.00510 * 5 3 2
8 8 N 1.31513 * 120.00136 * 359.97438 * 7 5 3
9 9 Si 1.86805 * 119.99897 * 179.97438 * 7 5 3
10 10 H 1.48498 * 109.47261 * 59.99916 * 9 7 5
11 11 H 1.48501 * 109.46815 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47192 * 299.99874 * 9 7 5
13 13 O 1.45203 * 109.47195 * 295.00260 * 3 2 1
14 14 C 1.34232 * 117.00080 * 90.00139 * 13 3 2
15 15 O 1.20827 * 119.99519 * 359.97438 * 14 13 3
16 16 C 1.50695 * 120.00136 * 180.02562 * 14 13 3
17 17 C 1.53003 * 109.47192 * 179.97438 * 16 14 13
18 18 H 1.08998 * 109.47374 * 54.99725 * 17 16 14
19 19 N 1.46502 * 109.46805 * 294.99656 * 17 16 14
20 20 C 1.34772 * 119.99817 * 154.65481 * 19 17 16
21 21 N 1.34775 * 120.00015 * 184.97362 * 20 19 17
22 22 O 1.21596 * 120.00007 * 4.97625 * 20 19 17
23 23 C 1.50701 * 109.47098 * 174.99987 * 17 16 14
24 24 C 1.38234 * 119.99860 * 78.73865 * 23 17 16
25 25 C 1.38241 * 119.99610 * 179.79193 * 24 23 17
26 26 C 1.38238 * 120.00090 * 0.43136 * 25 24 23
27 27 C 1.38240 * 119.99696 * 359.82184 * 26 25 24
28 28 C 1.38233 * 119.99743 * 259.01315 * 23 17 16
29 29 H 1.08998 * 109.47316 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46943 * 299.99866 * 1 2 3
31 31 H 1.09007 * 109.47413 * 59.99571 * 1 2 3
32 32 H 1.09000 * 109.46943 * 240.00134 * 2 1 3
33 33 H 1.08992 * 109.47405 * 120.00392 * 2 1 3
34 34 H 0.96998 * 120.00309 * 179.97438 * 8 7 5
35 35 H 1.09006 * 109.47118 * 299.99916 * 16 14 13
36 36 H 1.09001 * 109.47489 * 59.99497 * 16 14 13
37 37 H 0.97001 * 120.00215 * 334.65947 * 19 17 16
38 38 H 0.96990 * 120.00179 * 0.02562 * 21 20 19
39 39 H 0.97002 * 120.00113 * 180.02562 * 21 20 19
40 40 H 1.08000 * 120.00188 * 359.97438 * 24 23 17
41 41 H 1.07994 * 119.99784 * 180.27672 * 25 24 23
42 42 H 1.07994 * 119.99875 * 179.83339 * 26 25 24
43 43 H 1.07998 * 119.99762 * 179.97438 * 27 26 25
44 44 H 1.08003 * 119.99973 * 359.97438 * 28 23 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4443 0.1237
6 1 4.1472 1.8888 -0.6524
7 6 4.1433 0.8783 1.2279
8 7 3.4063 0.3373 2.1732
9 14 6.0051 0.8799 1.3810
10 1 6.5005 2.2798 1.3807
11 1 6.3979 0.2165 2.6502
12 1 6.5967 0.1452 0.2341
13 8 1.6558 2.0917 -1.2407
14 6 0.4727 2.7255 -1.2559
15 8 -0.2192 2.7370 -0.2654
16 6 0.0069 3.4217 -2.5086
17 6 -1.3618 4.0585 -2.2593
18 1 -1.3039 4.7166 -1.3923
19 7 -2.3512 3.0074 -2.0094
20 6 -3.4557 3.2797 -1.2866
21 7 -4.3156 2.2908 -0.9716
22 8 -3.6764 4.4174 -0.9188
23 6 -1.7722 4.8572 -3.4696
24 6 -2.2850 4.2141 -4.5806
25 6 -2.6655 4.9472 -5.6892
26 6 -2.5249 6.3224 -5.6900
27 6 -2.0072 6.9649 -4.5808
28 6 -1.6307 6.2322 -3.4707
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 3.8293 -0.0613 2.9497
35 1 0.7239 4.1959 -2.7820
36 1 -0.0721 2.6971 -3.3191
37 1 -2.2114 2.1154 -2.3640
38 1 -4.1394 1.3832 -1.2646
39 1 -5.1107 2.4868 -0.4517
40 1 -2.3911 3.1394 -4.5815
41 1 -3.0702 4.4452 -6.5555
42 1 -2.8196 6.8948 -6.5571
43 1 -1.8970 8.0392 -4.5816
44 1 -1.2263 6.7342 -2.6041
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787089953.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:28:50
Heat of formation + Delta-G solvation = -126.402500 kcal
Electronic energy + Delta-G solvation = -27428.080306 eV
Core-core repulsion = 23537.108879 eV
Total energy + Delta-G solvation = -3890.971428 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.71463 -40.81736 -39.82125 -37.80657 -36.30480 -35.46918 -34.69804 -33.35815
-32.22469 -31.67826 -30.89493 -29.22217 -26.04825 -24.95927 -23.56247 -22.78855
-22.45248 -21.52232 -21.08508 -19.34374 -18.91725 -18.52813 -18.28348 -17.58770
-17.19918 -17.05707 -16.44176 -16.25535 -16.04655 -15.62335 -15.32950 -15.04831
-14.88823 -14.75599 -14.20835 -14.11127 -13.99670 -13.73350 -13.35606 -13.24465
-13.16462 -13.02632 -12.76327 -12.63211 -12.51975 -12.16188 -12.08213 -11.84461
-11.72402 -11.43753 -11.41582 -11.18627 -10.78923 -10.68218 -10.50307 -10.08024
-9.75814 -9.61485 -8.26644 -6.43211 0.42748 0.55994 1.41366 1.44585
1.45613 1.52963 1.93861 2.04685 2.28103 2.42647 2.92727 3.03119
3.62016 3.68779 3.75434 3.96047 4.17955 4.19627 4.25661 4.35001
4.41338 4.44611 4.52886 4.61906 4.64328 4.71953 4.83835 4.87527
5.10332 5.12335 5.19773 5.25940 5.42075 5.44551 5.53121 5.60973
5.66542 5.71166 5.72134 5.90780 6.02982 6.06168 6.15425 6.19608
6.62666 7.06357 7.10197 7.29708 7.70020 8.79399
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.016692 B = 0.003350 C = 0.002983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.058656 B = 8355.656022 C = 9383.816570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.129 4.129
3 C 0.228 3.772
4 H 0.002 0.998
5 C -0.551 4.551
6 H 0.065 0.935
7 C 0.017 3.983
8 N -0.914 5.914
9 Si 0.977 3.023
10 H -0.271 1.271
11 H -0.279 1.279
12 H -0.263 1.263
13 O -0.365 6.365
14 C 0.443 3.557
15 O -0.532 6.532
16 C -0.108 4.108
17 C 0.227 3.773
18 H 0.068 0.932
19 N -0.719 5.719
20 C 0.707 3.293
21 N -0.850 5.850
22 O -0.643 6.643
23 C -0.102 4.102
24 C -0.108 4.108
25 C -0.126 4.126
26 C -0.124 4.124
27 C -0.128 4.128
28 C -0.122 4.122
29 H 0.060 0.940
30 H 0.028 0.972
31 H 0.046 0.954
32 H 0.047 0.953
33 H 0.081 0.919
34 H 0.269 0.731
35 H 0.135 0.865
36 H 0.140 0.860
37 H 0.407 0.593
38 H 0.412 0.588
39 H 0.419 0.581
40 H 0.135 0.865
41 H 0.145 0.855
42 H 0.144 0.856
43 H 0.138 0.862
44 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.807 4.107 -16.844 21.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.168 4.168
3 C 0.175 3.825
4 H 0.020 0.980
5 C -0.589 4.589
6 H 0.083 0.917
7 C -0.182 4.182
8 N -0.552 5.552
9 Si 0.801 3.199
10 H -0.196 1.196
11 H -0.204 1.204
12 H -0.187 1.187
13 O -0.281 6.281
14 C 0.287 3.713
15 O -0.422 6.422
16 C -0.145 4.145
17 C 0.120 3.880
18 H 0.086 0.914
19 N -0.374 5.374
20 C 0.405 3.595
21 N -0.419 5.419
22 O -0.525 6.525
23 C -0.103 4.103
24 C -0.126 4.126
25 C -0.144 4.144
26 C -0.142 4.142
27 C -0.146 4.146
28 C -0.141 4.141
29 H 0.079 0.921
30 H 0.048 0.952
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.099 0.901
34 H 0.078 0.922
35 H 0.153 0.847
36 H 0.158 0.842
37 H 0.243 0.757
38 H 0.242 0.758
39 H 0.251 0.749
40 H 0.153 0.847
41 H 0.163 0.837
42 H 0.162 0.838
43 H 0.156 0.844
44 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -12.994 4.948 -16.091 21.266
hybrid contribution 0.676 -0.717 0.953 1.371
sum -12.318 4.230 -15.138 19.970
Atomic orbital electron populations
1.21664 0.95835 1.00482 1.00184 1.21840 0.94884 0.97871 1.02164
1.20279 0.94184 0.89365 0.78709 0.97994 1.21348 0.90915 1.39824
1.06813 0.91651 1.25774 1.04038 0.93992 0.94438 1.70007 1.37407
1.37989 1.09832 0.85314 0.78020 0.78710 0.77875 1.19559 1.20412
1.18727 1.86461 1.36225 1.63175 1.42270 1.24143 0.79616 0.76561
0.90977 1.90662 1.55692 1.58699 1.37180 1.21773 0.96572 1.02386
0.93793 1.19167 0.85158 0.88247 0.95382 0.91361 1.44759 1.21311
1.14304 1.57020 1.16078 0.80502 0.84618 0.78280 1.42747 1.27379
1.10569 1.61196 1.90909 1.77697 1.22434 1.61488 1.20040 1.01083
0.94113 0.95110 1.21119 0.98254 1.00748 0.92483 1.21456 0.99755
0.94470 0.98692 1.21509 0.98772 0.95149 0.98737 1.21379 0.99060
1.00805 0.93323 1.21192 1.00213 0.93642 0.99051 0.92064 0.95238
0.93492 0.93447 0.90103 0.92153 0.84743 0.84204 0.75679 0.75814
0.74878 0.84700 0.83686 0.83793 0.84417 0.86544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.00 8.57 71.98 0.62 -4.38 16
2 C -0.13 -6.24 5.49 30.59 0.17 -6.07 16
3 C 0.23 12.05 2.25 29.85 0.07 12.12 16
4 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16
5 C -0.55 -30.87 8.90 25.60 0.23 -30.64 16
6 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16
7 C 0.02 0.95 5.29 84.66 0.45 1.40 16
8 N -0.91 -52.13 11.29 21.45 0.24 -51.88 16
9 Si 0.98 42.62 29.54 68.60 2.03 44.65 16
10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16
12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
13 O -0.36 -16.39 9.81 -51.43 -0.50 -16.89 16
14 C 0.44 16.74 6.28 71.23 0.45 17.18 16
15 O -0.53 -23.37 12.50 21.96 0.27 -23.10 16
16 C -0.11 -2.70 5.32 29.85 0.16 -2.54 16
17 C 0.23 6.05 1.70 44.25 0.08 6.12 16
18 H 0.07 2.36 7.31 -2.39 -0.02 2.34 16
19 N -0.72 -17.71 3.51 -461.40 -1.62 -19.33 16
20 C 0.71 20.63 8.79 179.06 1.57 22.20 16
21 N -0.85 -16.67 8.88 -184.74 -1.64 -18.31 16
22 O -0.64 -25.18 16.89 -4.02 -0.07 -25.25 16
23 C -0.10 -2.38 4.91 -19.87 -0.10 -2.47 16
24 C -0.11 -2.02 9.32 22.27 0.21 -1.82 16
25 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16
26 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16
27 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16
28 C -0.12 -2.88 9.67 22.27 0.22 -2.66 16
29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
30 H 0.03 1.30 7.80 -2.39 -0.02 1.28 16
31 H 0.05 1.70 6.06 -2.38 -0.01 1.68 16
32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16
33 H 0.08 4.35 5.95 -2.39 -0.01 4.34 16
34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16
35 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16
36 H 0.14 2.55 8.14 -2.39 -0.02 2.54 16
37 H 0.41 7.61 8.63 -92.71 -0.80 6.81 16
38 H 0.41 5.37 8.85 -92.72 -0.82 4.55 16
39 H 0.42 7.32 8.93 -92.71 -0.83 6.49 16
40 H 0.14 1.97 7.76 -2.91 -0.02 1.95 16
41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16
42 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16
43 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16
44 H 0.12 2.77 8.03 -2.91 -0.02 2.75 16
Total: -1.00 -77.41 369.67 2.09 -75.31
By element:
Atomic # 1 Polarization: 33.61 SS G_CDS: -1.40 Total: 32.21 kcal
Atomic # 6 Polarization: -2.19 SS G_CDS: 4.78 Total: 2.59 kcal
Atomic # 7 Polarization: -86.51 SS G_CDS: -3.02 Total: -89.52 kcal
Atomic # 8 Polarization: -64.94 SS G_CDS: -0.30 Total: -65.24 kcal
Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal
Total: -77.41 2.09 -75.31 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787089953.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.090 kcal
(2) G-P(sol) polarization free energy of solvation -77.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.496 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.403 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds