Wall clock time and date at job start Tue Mar 31 2020 12:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 H 1.09005 * 109.46828 * 55.00724 * 3 2 1 5 5 N 1.46503 * 109.47289 * 295.00454 * 3 2 1 6 6 N 1.40098 * 120.00139 * 149.99875 * 5 3 2 7 7 C 1.29736 * 120.00311 * 180.02562 * 6 5 3 8 8 C 1.47503 * 120.00303 * 180.02562 * 7 6 5 9 9 C 1.39725 * 120.12616 * 0.02562 * 8 7 6 10 10 C 1.37943 * 119.95117 * 179.97438 * 9 8 7 11 11 C 1.38298 * 120.21531 * 359.73634 * 10 9 8 12 12 C 1.38836 * 120.26016 * 0.53820 * 11 10 9 13 13 O 1.35900 * 119.97837 * 179.72724 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72997 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38463 * 120.04273 * 359.46110 * 12 11 10 25 25 C 1.50705 * 109.47221 * 175.00340 * 3 2 1 26 26 O 1.20818 * 120.00113 * 120.00455 * 25 3 2 27 27 O 1.34228 * 119.99756 * 300.00230 * 25 3 2 28 28 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47110 * 299.99591 * 1 2 3 30 30 H 1.08995 * 109.47465 * 60.00021 * 1 2 3 31 31 H 1.09007 * 109.47110 * 240.00409 * 2 1 3 32 32 H 1.09002 * 109.47888 * 120.00487 * 2 1 3 33 33 H 0.96999 * 119.99636 * 329.99491 * 5 3 2 34 34 H 1.08000 * 119.99877 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.02547 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.89225 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.86696 * 180.29398 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.10987 * 180.24736 * 24 12 11 44 44 H 0.96704 * 116.99726 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6523 2.0975 -1.2518 6 7 1.4184 3.4786 -1.2765 7 6 1.0747 4.0587 -2.3848 8 6 0.8290 5.5129 -2.4110 9 6 0.9662 6.2684 -1.2436 10 6 0.7360 7.6282 -1.2722 11 6 0.3748 8.2482 -2.4545 12 6 0.2304 7.5052 -3.6184 13 8 -0.1301 8.1195 -4.7758 14 6 -0.3500 9.5303 -4.7203 15 6 -0.7442 10.0401 -6.1080 16 6 -0.9754 11.5280 -6.0496 17 1 -0.8530 12.0573 -5.1162 18 6 -1.3423 12.2139 -7.1880 19 7 -1.4909 11.5694 -8.3248 20 14 -1.6296 14.0583 -7.1156 21 1 -1.3993 14.5409 -5.7302 22 1 -0.6902 14.7423 -8.0401 23 1 -3.0270 14.3578 -7.5187 24 6 0.4588 6.1396 -3.6020 25 6 3.5419 1.4443 0.1238 26 8 4.2190 1.9417 -0.7445 27 8 4.1274 0.8933 1.1986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5577 1.5750 -2.0635 34 1 0.9692 3.4769 -3.2886 35 1 1.2530 5.7882 -0.3197 36 1 0.8428 8.2113 -0.3695 37 1 0.2006 9.3139 -2.4716 38 1 -1.1506 9.7458 -4.0127 39 1 0.5643 10.0281 -4.3971 40 1 0.0567 9.8247 -6.8153 41 1 -1.6583 9.5424 -6.4317 42 1 -1.7486 12.0520 -9.1258 43 1 0.3507 5.5613 -4.5076 44 1 5.0935 0.9181 1.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793071158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:20 Heat of formation + Delta-G solvation = -75.322015 kcal Electronic energy + Delta-G solvation = -24898.897366 eV Core-core repulsion = 21010.140954 eV Total energy + Delta-G solvation = -3888.756412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69529 -39.71656 -37.85800 -37.04246 -36.35130 -35.10347 -33.36929 -31.83647 -30.87418 -29.82624 -28.98988 -27.23442 -25.15443 -23.55346 -23.06631 -22.31582 -21.39427 -21.19392 -19.98924 -18.49071 -17.85182 -17.23152 -17.12584 -16.31425 -15.95121 -15.85298 -15.58672 -15.30252 -15.07196 -14.69293 -14.45368 -14.10245 -13.94042 -13.39551 -13.24995 -13.05964 -12.81391 -12.62989 -12.34934 -12.32352 -12.03979 -11.73839 -11.56139 -11.47316 -11.42531 -11.35663 -10.93668 -10.79728 -10.75000 -10.52838 -10.27732 -9.86350 -9.65269 -9.28377 -9.27957 -8.45178 -8.08233 -7.72443 -6.10129 -4.14569 0.92490 1.69874 1.82253 2.17308 2.52627 2.86713 3.26975 3.34105 3.37696 3.82695 4.06891 4.08900 4.38407 4.41040 4.56631 4.68590 4.80602 4.96775 5.04766 5.11325 5.18162 5.26475 5.35609 5.38640 5.40956 5.51846 5.57616 5.63683 5.72278 6.01843 6.04903 6.08946 6.10816 6.15682 6.54044 6.56338 6.59723 6.71320 6.73921 6.96330 7.51420 7.52380 7.64859 7.81787 8.06626 8.08451 8.24410 8.91324 9.49809 11.01458 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.001716 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.393923 B =16317.387494 C =16549.341682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.203 3.797 4 H 0.123 0.877 5 N -0.639 5.639 6 N -0.225 5.225 7 C 0.087 3.913 8 C -0.010 4.010 9 C -0.136 4.136 10 C -0.085 4.085 11 C -0.201 4.201 12 C 0.143 3.857 13 O -0.315 6.315 14 C 0.065 3.935 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.138 4.138 25 C 0.452 3.548 26 O -0.502 6.502 27 O -0.520 6.520 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.383 0.617 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.132 0.868 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -24.294 19.819 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.093 3.907 4 H 0.141 0.859 5 N -0.376 5.376 6 N -0.031 5.031 7 C -0.125 4.125 8 C -0.013 4.013 9 C -0.157 4.157 10 C -0.103 4.103 11 C -0.221 4.221 12 C 0.096 3.904 13 O -0.229 6.229 14 C -0.009 4.009 15 C -0.013 4.013 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.160 4.160 25 C 0.291 3.709 26 O -0.388 6.388 27 O -0.331 6.331 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.221 0.779 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.150 0.850 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.356 -24.193 20.310 32.221 hybrid contribution 0.533 0.797 -1.118 1.473 sum 6.888 -23.396 19.191 31.034 Atomic orbital electron populations 1.21746 0.93769 1.02282 1.02912 1.21811 0.97819 0.92631 1.04174 1.20110 0.85684 0.95458 0.89439 0.85942 1.47548 1.78164 1.02059 1.09809 1.74158 1.09343 0.93597 1.25979 1.23916 1.00383 0.94090 0.94085 1.17959 1.00306 0.89670 0.93316 1.21088 1.03111 0.93656 0.97816 1.20852 0.97719 0.94441 0.97277 1.21509 1.06664 1.00935 0.92962 1.18971 0.93318 0.92004 0.86137 1.86172 1.81765 1.25624 1.29309 1.23334 0.99205 0.75214 1.03146 1.19133 0.97937 0.95500 0.88708 1.21015 1.47710 0.92065 0.95606 0.92290 1.24995 0.95162 0.98781 0.95302 1.69989 1.47045 1.35938 0.99773 0.86430 0.77891 0.84870 0.78194 1.19637 1.20859 1.20850 1.20379 1.05365 0.92221 0.97989 1.24804 0.93453 0.74015 0.78674 1.90742 1.65610 1.41624 1.40835 1.84538 1.28787 1.74505 1.45314 0.91939 0.92003 0.92122 0.90941 0.88739 0.77855 0.86868 0.85597 0.85938 0.85101 0.93066 0.93085 0.95371 0.95364 0.92775 0.84996 0.73321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.80 37.16 0.36 -0.27 16 2 C -0.13 -0.54 5.47 -26.73 -0.15 -0.68 16 3 C 0.20 1.42 3.15 -69.08 -0.22 1.20 16 4 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 5 N -0.64 -5.68 5.05 -5.88 -0.03 -5.71 16 6 N -0.22 -2.57 10.61 32.16 0.34 -2.23 16 7 C 0.09 0.99 10.75 -14.66 -0.16 0.83 16 8 C -0.01 -0.14 5.87 -105.06 -0.62 -0.75 16 9 C -0.14 -1.79 9.58 -39.13 -0.37 -2.16 16 10 C -0.08 -1.12 10.02 -39.67 -0.40 -1.52 16 11 C -0.20 -3.10 9.03 -39.34 -0.36 -3.46 16 12 C 0.14 2.45 6.68 -39.28 -0.26 2.18 16 13 O -0.32 -6.40 10.13 -19.43 -0.20 -6.60 16 14 C 0.07 1.38 4.68 37.16 0.17 1.56 16 15 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 16 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.14 -2.05 9.73 -39.00 -0.38 -2.43 16 25 C 0.45 3.96 7.70 36.01 0.28 4.23 16 26 O -0.50 -6.54 17.19 -18.74 -0.32 -6.86 16 27 O -0.52 -3.03 13.23 -39.25 -0.52 -3.55 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.06 0.32 7.75 -51.93 -0.40 -0.08 16 31 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.09 0.31 7.99 -51.93 -0.42 -0.11 16 33 H 0.38 2.92 8.61 -182.60 -1.57 1.34 16 34 H 0.11 1.06 8.02 -52.49 -0.42 0.64 16 35 H 0.13 1.51 7.55 -52.49 -0.40 1.12 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.97 6.28 -52.49 -0.33 1.64 16 38 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 39 H 0.05 1.03 7.64 -51.93 -0.40 0.64 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.41 0.98 9.10 45.56 0.41 1.39 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -34.12 384.35 -8.71 -42.83 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.84 Total: -0.12 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.65 Total: -14.10 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 1.05 Total: -33.62 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.04 Total: -17.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.12 -8.71 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793071158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.488 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds