Wall clock time and date at job start Tue Mar 31 2020 12:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 N 1.46899 * 109.47175 * 177.06620 * 3 2 1 5 5 C 1.48236 * 111.00024 * 294.06244 * 4 3 2 6 6 C 1.51312 * 104.76363 * 214.70727 * 5 4 3 7 7 O 1.21279 * 125.74586 * 196.74024 * 6 5 4 8 8 N 1.34848 * 108.50382 * 16.76710 * 6 5 4 9 9 C 1.46804 * 109.58747 * 0.42196 * 8 6 5 10 10 H 1.08996 * 110.11835 * 101.57495 * 9 8 6 11 11 C 1.50707 * 110.11855 * 223.23406 * 9 8 6 12 12 C 1.38320 * 119.90587 * 146.44767 * 11 9 8 13 13 C 1.38160 * 120.16714 * 179.72256 * 12 11 9 14 14 C 1.38758 * 119.98364 * 0.55482 * 13 12 11 15 15 O 1.35800 * 120.08880 * 179.74918 * 14 13 12 16 16 C 1.34810 * 117.00447 * 5.78860 * 15 14 13 17 17 H 1.08004 * 119.99703 * 354.88403 * 16 15 14 18 18 C 1.38633 * 120.00062 * 174.88396 * 16 15 14 19 19 N 1.31573 * 119.99866 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00461 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47164 * 89.99691 * 20 18 16 22 22 H 1.48503 * 109.47318 * 209.99983 * 20 18 16 23 23 H 1.48502 * 109.46908 * 329.99963 * 20 18 16 24 24 C 1.39331 * 119.81853 * 359.71537 * 14 13 12 25 25 O 1.35945 * 120.08577 * 180.02562 * 24 14 13 26 26 C 1.42900 * 117.00091 * 179.97438 * 25 24 14 27 27 C 1.38234 * 119.90443 * 326.72259 * 11 9 8 28 28 H 1.09000 * 109.46688 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47366 * 300.00221 * 1 2 3 30 30 H 1.09001 * 109.46784 * 60.00211 * 1 2 3 31 31 H 1.08997 * 109.47450 * 239.99277 * 2 1 3 32 32 H 1.09004 * 109.47000 * 119.99046 * 2 1 3 33 33 H 1.09002 * 109.47149 * 297.06786 * 3 2 1 34 34 H 1.08995 * 109.47690 * 57.06648 * 3 2 1 35 35 H 1.08998 * 110.37921 * 333.53049 * 5 4 3 36 36 H 1.09002 * 110.37949 * 95.78062 * 5 4 3 37 37 H 0.97003 * 125.20863 * 180.39244 * 8 6 5 38 38 H 1.08002 * 119.91531 * 0.02562 * 12 11 9 39 39 H 1.07997 * 120.00861 * 180.27297 * 13 12 11 40 40 H 0.97002 * 120.00170 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.47186 * 60.00600 * 26 25 24 42 42 H 1.09001 * 109.47132 * 180.02562 * 26 25 24 43 43 H 1.08996 * 109.47293 * 300.00118 * 26 25 24 44 44 H 1.07998 * 119.99858 * 0.02562 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5073 1.4431 0.0709 5 6 3.9767 0.9007 1.3681 6 6 5.2234 1.6955 1.6899 7 8 6.0688 1.3889 2.5037 8 7 5.2358 2.8025 0.9200 9 6 4.0379 2.8255 0.0717 10 1 3.2983 3.5107 0.4859 11 6 4.4032 3.2413 -1.3301 12 6 3.7155 2.7127 -2.4075 13 6 4.0421 3.0945 -3.6945 14 6 5.0700 4.0016 -3.9090 15 8 5.3961 4.3745 -5.1735 16 6 4.6071 3.9211 -6.1681 17 1 3.8103 3.2252 -5.9507 18 6 4.8185 4.3482 -7.4700 19 7 4.0487 3.9053 -8.4408 20 14 6.1970 5.5514 -7.8462 21 1 7.4398 4.7995 -8.1546 22 1 5.8203 6.3860 -9.0153 23 1 6.4267 6.4252 -6.6676 24 6 5.7660 4.5294 -2.8236 25 8 6.7736 5.4190 -3.0274 26 6 7.4424 5.9187 -1.8677 27 6 5.4284 4.1456 -1.5356 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.7202 1.9409 -0.9151 34 1 1.6344 1.9714 0.8624 35 1 3.2207 1.0519 2.1386 36 1 4.2141 -0.1588 1.2729 37 1 5.9299 3.4802 0.9260 38 1 2.9180 2.0035 -2.2420 39 1 3.5006 2.6835 -4.5337 40 1 4.1963 4.2044 -9.3516 41 1 7.8905 5.0890 -1.3209 42 1 8.2220 6.6177 -2.1707 43 1 6.7248 6.4309 -1.2268 44 1 5.9665 4.5526 -0.6923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840821882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:32 Heat of formation + Delta-G solvation = -69.371922 kcal Electronic energy + Delta-G solvation = -27275.306805 eV Core-core repulsion = 23386.808409 eV Total energy + Delta-G solvation = -3888.498396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.06666 -41.11807 -39.35943 -38.86958 -37.46940 -35.86761 -34.43571 -32.96103 -31.78739 -31.05242 -29.05496 -27.97825 -27.44676 -26.39429 -24.10100 -23.41799 -22.18489 -22.00916 -21.53606 -19.79013 -19.62097 -18.45337 -17.85751 -17.63428 -17.12729 -16.71177 -16.35617 -16.17899 -16.00418 -15.78296 -15.45636 -15.34295 -15.17873 -15.14173 -14.91077 -14.45480 -14.21679 -14.03873 -13.80421 -13.66537 -13.14094 -13.07450 -12.88362 -12.63233 -12.56431 -12.46364 -12.13660 -12.05476 -11.84400 -11.74923 -11.49071 -11.33722 -11.15531 -10.89065 -10.60715 -9.65907 -9.50437 -8.74957 -8.48589 -6.17322 0.41833 0.57442 1.30888 1.34424 1.39861 1.53292 2.14066 2.29862 2.49081 2.63706 2.77431 2.99355 3.11257 3.22361 3.58319 3.90772 4.00601 4.06976 4.23246 4.25477 4.29620 4.31648 4.41722 4.48847 4.54000 4.57939 4.59978 4.69596 4.70926 4.84682 4.88605 4.93475 5.13338 5.24780 5.31899 5.38616 5.40087 5.51037 5.55043 5.63174 5.73190 5.83314 5.92417 5.95639 6.06083 6.57732 6.86693 7.06912 7.63566 8.62613 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.003811 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.947646 B = 7346.329320 C = 9092.880524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.038 3.962 4 N -0.511 5.511 5 C 0.008 3.992 6 C 0.518 3.482 7 O -0.570 6.570 8 N -0.720 5.720 9 C 0.345 3.655 10 H 0.102 0.898 11 C -0.122 4.122 12 C -0.069 4.069 13 C -0.202 4.202 14 C 0.095 3.905 15 O -0.239 6.239 16 C -0.395 4.395 17 H 0.088 0.912 18 C 0.015 3.985 19 N -0.920 5.920 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.266 1.266 23 H -0.267 1.267 24 C 0.054 3.946 25 O -0.343 6.343 26 C 0.018 3.982 27 C -0.146 4.146 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.420 0.580 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.284 0.716 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 -2.013 21.577 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.089 4.089 4 N -0.237 5.237 5 C -0.122 4.122 6 C 0.305 3.695 7 O -0.448 6.448 8 N -0.377 5.377 9 C 0.151 3.849 10 H 0.119 0.881 11 C -0.124 4.124 12 C -0.088 4.088 13 C -0.222 4.222 14 C 0.045 3.955 15 O -0.147 6.147 16 C -0.471 4.471 17 H 0.105 0.895 18 C -0.184 4.184 19 N -0.561 5.561 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.191 1.191 23 H -0.192 1.192 24 C 0.009 3.991 25 O -0.258 6.258 26 C -0.076 4.076 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.262 0.738 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.663 -2.338 21.078 21.521 hybrid contribution 0.462 1.025 -0.219 1.145 sum -3.201 -1.313 20.859 21.144 Atomic orbital electron populations 1.21727 0.94606 1.02287 1.02214 1.21480 0.96188 0.94965 1.02944 1.22695 0.84029 0.99167 1.03049 1.65549 1.12625 1.14445 1.31078 1.23196 0.95059 1.01745 0.92192 1.21404 0.87500 0.81725 0.78906 1.90754 1.44082 1.73059 1.36932 1.46646 1.25579 1.25141 1.40349 1.20866 0.85890 0.91551 0.86630 0.88147 1.19366 0.98647 0.99867 0.94556 1.20783 1.00003 0.98361 0.89637 1.21121 1.00307 1.01633 0.99093 1.19082 0.95842 0.96551 0.84006 1.83602 1.50899 1.67919 1.12251 1.20763 1.13331 1.26743 0.86253 0.89484 1.25136 1.00109 0.99248 0.93900 1.69722 1.39715 1.45387 1.01252 0.85328 0.78832 0.79194 0.78102 1.19468 1.19062 1.19184 1.18319 0.93035 0.95851 0.91905 1.86148 1.46248 1.57437 1.35938 1.23312 0.97257 0.99585 0.87444 1.20710 1.00516 1.01569 0.93743 0.92124 0.91868 0.92841 0.92016 0.90924 0.89594 0.91697 0.86788 0.85824 0.73803 0.83529 0.86216 0.90639 0.91729 0.87137 0.91207 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.41 5.98 30.60 0.18 -1.23 16 3 C 0.04 0.49 4.10 86.30 0.35 0.84 16 4 N -0.51 -8.77 4.56 -883.40 -4.02 -12.79 16 5 C 0.01 0.13 5.56 85.49 0.47 0.60 16 6 C 0.52 11.45 8.61 87.84 0.76 12.21 16 7 O -0.57 -17.16 18.03 -3.03 -0.05 -17.22 16 8 N -0.72 -13.73 5.72 -452.15 -2.58 -16.32 16 9 C 0.34 6.42 3.46 128.11 0.44 6.86 16 10 H 0.10 1.44 7.75 -2.39 -0.02 1.42 16 11 C -0.12 -3.25 5.67 -19.84 -0.11 -3.36 16 12 C -0.07 -2.16 9.11 22.27 0.20 -1.96 16 13 C -0.20 -8.44 9.16 22.38 0.21 -8.24 16 14 C 0.09 4.44 6.66 22.66 0.15 4.60 16 15 O -0.24 -13.33 8.37 -9.29 -0.08 -13.41 16 16 C -0.39 -23.27 9.95 67.91 0.68 -22.60 16 17 H 0.09 5.26 5.44 -2.91 -0.02 5.24 16 18 C 0.01 0.86 5.49 84.83 0.47 1.32 16 19 N -0.92 -54.83 13.96 21.61 0.30 -54.53 16 20 Si 0.96 46.81 28.62 68.60 1.96 48.78 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.05 2.11 6.70 22.61 0.15 2.26 16 25 O -0.34 -13.12 10.28 -79.13 -0.81 -13.93 16 26 C 0.02 0.43 9.81 113.37 1.11 1.54 16 27 C -0.15 -4.19 8.30 22.35 0.19 -4.00 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.74 7.29 -2.39 -0.02 0.72 16 33 H 0.09 1.26 6.23 -2.39 -0.01 1.25 16 34 H 0.06 0.60 7.89 -2.39 -0.02 0.58 16 35 H 0.11 1.16 7.68 -2.39 -0.02 1.14 16 36 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.42 7.09 7.45 -92.71 -0.69 6.40 16 38 H 0.15 3.81 5.33 -2.91 -0.02 3.80 16 39 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 40 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.06 1.27 7.66 -2.39 -0.02 1.26 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 44 H 0.15 3.17 4.89 -2.91 -0.01 3.15 16 Total: -1.00 -75.34 357.42 1.03 -74.31 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.36 Total: 17.14 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 5.96 Total: -12.02 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -6.31 Total: -83.64 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.95 Total: -44.56 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.96 Total: 48.78 kcal Total: -75.34 1.03 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840821882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.942 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds