Wall clock time and date at job start Tue Mar 31 2020 12:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 H 1.09000 * 109.46940 * 304.99824 * 3 2 1 5 5 N 1.46493 * 109.46941 * 65.00212 * 3 2 1 6 6 C 1.34781 * 119.99856 * 274.99796 * 5 3 2 7 7 C 1.50705 * 119.99662 * 180.02562 * 6 5 3 8 8 O 1.21274 * 119.99994 * 359.97438 * 6 5 3 9 9 C 1.50701 * 109.46945 * 184.99925 * 3 2 1 10 10 O 1.21277 * 120.00208 * 240.00252 * 9 3 2 11 11 N 1.34785 * 119.99943 * 60.00270 * 9 3 2 12 12 C 1.46499 * 119.99649 * 180.02562 * 11 9 3 13 13 C 1.50701 * 109.46768 * 179.97438 * 12 11 9 14 14 C 1.38298 * 119.93398 * 269.72553 * 13 12 11 15 15 C 1.38099 * 120.07106 * 179.72600 * 14 13 12 16 16 C 1.38880 * 119.92988 * 0.56842 * 15 14 13 17 17 O 1.35754 * 120.06915 * 179.68352 * 16 15 14 18 18 C 1.34827 * 116.99963 * 174.48647 * 17 16 15 19 19 H 1.07999 * 119.99874 * 5.05537 * 18 17 16 20 20 C 1.38655 * 119.99955 * 185.05641 * 18 17 16 21 21 N 1.31555 * 119.99841 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99934 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47199 * 89.99783 * 22 20 18 24 24 H 1.48504 * 109.46984 * 210.00115 * 22 20 18 25 25 H 1.48496 * 109.47161 * 329.99979 * 22 20 18 26 26 C 1.38882 * 119.86146 * 359.70445 * 16 15 14 27 27 C 1.38097 * 119.93094 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47094 * 299.99923 * 1 2 3 30 30 H 1.09002 * 109.46978 * 60.00051 * 1 2 3 31 31 H 1.09000 * 109.47094 * 240.00077 * 2 1 3 32 32 H 1.09002 * 109.46978 * 119.99949 * 2 1 3 33 33 H 0.97005 * 120.00124 * 94.99684 * 5 3 2 34 34 H 1.09007 * 109.46533 * 90.00254 * 7 6 5 35 35 H 1.09003 * 109.47088 * 209.99885 * 7 6 5 36 36 H 1.08999 * 109.47234 * 330.00373 * 7 6 5 37 37 H 0.96995 * 119.99686 * 359.97438 * 11 9 3 38 38 H 1.08994 * 109.47034 * 299.99612 * 12 11 9 39 39 H 1.09000 * 109.47249 * 60.00237 * 12 11 9 40 40 H 1.08001 * 119.96162 * 359.97438 * 14 13 12 41 41 H 1.08004 * 120.03523 * 180.27073 * 15 14 13 42 42 H 0.97001 * 119.99673 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.03503 * 179.97438 * 26 16 15 44 44 H 1.07996 * 119.96421 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 6 0.0367 3.3386 2.6545 8 8 -0.3392 2.6327 0.4341 9 6 3.5419 1.4443 -0.1238 10 8 4.2216 1.9435 0.7477 11 7 4.1298 0.8911 -1.2032 12 6 5.5898 0.8924 -1.3232 13 6 5.9885 0.2182 -2.6107 14 6 6.2241 -1.1444 -2.6320 15 6 6.5841 -1.7660 -3.8115 16 6 6.7210 -1.0194 -4.9745 17 8 7.0810 -1.6266 -6.1341 18 6 7.0846 -0.8663 -7.2476 19 1 6.8888 0.1935 -7.1785 20 6 7.3398 -1.4452 -8.4814 21 7 7.3439 -0.7033 -9.5678 22 14 7.6777 -3.2785 -8.6010 23 1 6.3987 -4.0055 -8.8025 24 1 8.5826 -3.5412 -9.7488 25 1 8.3206 -3.7462 -7.3468 26 6 6.4892 0.3497 -4.9487 27 6 6.1230 0.9643 -3.7675 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1231 1.9978 34 1 0.3218 4.3901 2.6173 35 1 -1.0422 3.2591 2.7876 36 1 0.5425 2.8544 3.4899 37 1 3.5861 0.4916 -1.9001 38 1 5.9535 1.9199 -1.3230 39 1 6.0241 0.3530 -0.4815 40 1 6.1226 -1.7235 -1.7261 41 1 6.7637 -2.8309 -3.8284 42 1 7.5227 -1.1083 -10.4309 43 1 6.5952 0.9330 -5.8514 44 1 5.9430 2.0290 -3.7467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865137647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:23 Heat of formation + Delta-G solvation = -83.942476 kcal Electronic energy + Delta-G solvation = -25904.488347 eV Core-core repulsion = 22015.358124 eV Total energy + Delta-G solvation = -3889.130223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.73400 -39.54187 -39.09895 -37.12880 -35.60622 -34.71355 -32.88621 -32.49720 -30.49256 -30.30433 -29.99565 -27.51429 -25.84171 -24.42190 -22.40363 -22.23958 -20.93957 -20.69812 -20.47528 -18.17017 -17.98993 -17.41320 -17.08717 -16.31798 -16.07109 -15.55491 -15.33905 -14.82664 -14.65676 -14.33739 -14.17974 -13.99970 -13.91318 -13.70973 -13.47104 -13.08650 -12.93054 -12.82485 -12.68885 -12.40000 -12.32419 -12.22668 -12.02255 -11.76964 -11.53720 -11.17315 -11.03758 -10.88794 -10.81848 -10.26025 -10.17524 -10.09644 -9.52717 -9.37823 -9.16648 -8.98441 -8.43382 -7.53312 -6.53200 -4.20285 1.86603 1.97655 2.30121 2.40323 2.71040 3.14350 3.18378 3.30884 3.32944 4.13760 4.27971 4.43832 4.52220 4.62174 4.70193 4.74949 4.86719 4.98565 5.02477 5.05220 5.10087 5.25752 5.27380 5.47649 5.49776 5.51128 5.65517 5.70374 5.74879 5.80844 5.98166 6.05754 6.15697 6.18988 6.28643 6.40606 6.62463 6.84263 7.06608 7.13571 7.19841 7.34980 7.45249 7.66860 7.90507 7.91193 7.98305 8.81103 9.41186 10.53812 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.002197 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.062084 B =12740.948837 C =13025.799565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.125 3.875 4 H 0.115 0.885 5 N -0.712 5.712 6 C 0.512 3.488 7 C -0.172 4.172 8 O -0.542 6.542 9 C 0.508 3.492 10 O -0.545 6.545 11 N -0.714 5.714 12 C 0.178 3.822 13 C -0.209 4.209 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.167 3.833 17 O -0.212 6.212 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.874 5.874 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.051 4.051 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.405 0.595 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.281 0.719 43 H 0.135 0.865 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 2.991 21.541 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.016 3.984 4 H 0.132 0.868 5 N -0.366 5.366 6 C 0.299 3.701 7 C -0.231 4.231 8 O -0.419 6.419 9 C 0.293 3.707 10 O -0.423 6.423 11 N -0.366 5.366 12 C 0.056 3.944 13 C -0.211 4.211 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.114 3.886 17 O -0.116 6.116 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.511 5.511 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.070 4.070 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.240 0.760 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.152 0.848 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.729 3.112 21.171 23.938 hybrid contribution 0.328 -0.755 -0.375 0.904 sum -10.401 2.357 20.797 23.372 Atomic orbital electron populations 1.21798 0.93949 1.01099 1.03228 1.21923 0.97843 0.93850 1.03225 1.20896 0.91693 0.95795 0.90003 0.86765 1.45838 1.17108 1.57608 1.16079 1.20777 0.81070 0.77838 0.90368 1.21874 1.04232 1.02188 0.94824 1.90745 1.51256 1.58829 1.41060 1.20569 0.89828 0.78053 0.82215 1.90684 1.65258 1.45853 1.40456 1.46295 1.08634 1.59102 1.22530 1.20035 0.78636 1.00352 0.95370 1.19245 1.13118 0.94252 0.94456 1.20524 0.97001 0.93430 0.96457 1.20214 1.10407 0.99608 0.91219 1.19192 0.91408 0.91228 0.86790 1.83575 1.74617 1.39300 1.14066 1.20788 1.50162 0.93730 0.82065 0.87469 1.24499 0.95656 1.00255 0.93557 1.69641 1.46239 1.36659 0.98529 0.86167 0.78941 0.83216 0.78516 1.19773 1.20658 1.18324 1.21284 1.08927 0.94834 0.99262 1.20704 0.96062 0.98565 0.91688 0.93012 0.92454 0.91797 0.90282 0.91190 0.75340 0.88729 0.88803 0.90125 0.76012 0.91281 0.91260 0.86765 0.86335 0.90858 0.84757 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.52 37.16 0.32 -0.99 16 2 C -0.13 -1.08 5.55 -26.73 -0.15 -1.23 16 3 C 0.12 1.18 2.67 -69.08 -0.18 1.00 16 4 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 5 N -0.71 -6.18 4.90 -54.93 -0.27 -6.45 16 6 C 0.51 4.66 6.51 -10.98 -0.07 4.58 16 7 C -0.17 -0.89 10.30 36.01 0.37 -0.52 16 8 O -0.54 -6.83 14.24 5.56 0.08 -6.75 16 9 C 0.51 5.70 7.22 -10.98 -0.08 5.62 16 10 O -0.54 -7.60 15.84 5.56 0.09 -7.52 16 11 N -0.71 -7.69 5.41 -61.47 -0.33 -8.03 16 12 C 0.18 2.19 5.80 -5.19 -0.03 2.16 16 13 C -0.21 -3.02 5.25 -104.57 -0.55 -3.57 16 14 C -0.06 -0.82 9.69 -39.61 -0.38 -1.21 16 15 C -0.20 -3.51 9.99 -39.40 -0.39 -3.90 16 16 C 0.17 3.58 6.65 -39.11 -0.26 3.32 16 17 O -0.21 -5.30 8.59 0.04 0.00 -5.30 16 18 C -0.39 -10.58 9.95 30.89 0.31 -10.28 16 19 H 0.11 2.95 5.44 -52.49 -0.29 2.66 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 21 N -0.87 -24.45 13.96 55.48 0.77 -23.68 16 22 Si 0.91 20.89 28.62 -169.99 -4.86 16.02 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.22 -4.45 9.17 -39.39 -0.36 -4.81 16 27 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 5.65 -51.93 -0.29 0.27 16 30 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 31 H 0.08 0.59 7.43 -51.93 -0.39 0.21 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 3.18 7.79 -40.82 -0.32 2.86 16 34 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.40 3.89 7.82 -40.82 -0.32 3.57 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 42 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -31.09 369.87 -6.95 -38.04 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.06 Total: 7.46 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.95 Total: -9.38 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.17 Total: -38.15 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.86 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.09 -6.95 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865137647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.900 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds