Wall clock time and date at job start Tue Mar 31 2020 12:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.53006 * 109.46623 * 65.00288 * 3 2 1 6 6 C 1.50697 * 109.46961 * 185.00027 * 3 2 1 7 7 N 1.28866 * 124.77075 * 119.72978 * 6 3 2 8 8 C 1.32457 * 117.11290 * 179.81566 * 7 6 3 9 9 C 1.48518 * 122.93825 * 180.22491 * 8 7 6 10 10 C 1.36441 * 126.89635 * 334.96742 * 9 8 7 11 11 N 1.35351 * 106.02814 * 179.85183 * 10 9 8 12 12 C 1.46497 * 125.76929 * 180.15149 * 11 10 9 13 13 C 1.52999 * 109.47333 * 125.29383 * 12 11 10 14 14 C 1.50703 * 109.47117 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99624 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99635 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00048 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47199 * 89.99888 * 18 16 14 20 20 H 1.48507 * 109.46762 * 209.99434 * 18 16 14 21 21 H 1.48496 * 109.47145 * 329.99663 * 18 16 14 22 22 N 1.28663 * 108.46089 * 0.42311 * 11 10 9 23 23 N 1.28610 * 110.47867 * 359.73128 * 22 11 10 24 24 C 1.34720 * 114.11562 * 0.46432 * 8 7 6 25 25 C 1.50701 * 126.05476 * 179.79721 * 24 8 7 26 26 S 1.70924 * 124.77361 * 300.02754 * 6 3 2 27 27 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 28 28 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 29 29 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 31 31 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 32 32 H 1.09001 * 109.47002 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 34 34 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 35 35 H 1.08000 * 126.98552 * 0.02562 * 10 9 8 36 36 H 1.09007 * 109.46955 * 245.29268 * 12 11 10 37 37 H 1.09001 * 109.47178 * 5.28964 * 12 11 10 38 38 H 1.09002 * 109.47086 * 300.00316 * 13 12 11 39 39 H 1.08999 * 109.47174 * 60.00197 * 13 12 11 40 40 H 0.97009 * 120.00223 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46899 * 179.97438 * 25 24 8 42 42 H 1.08995 * 109.47377 * 299.98208 * 25 24 8 43 43 H 1.09001 * 109.47451 * 59.98174 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 3.5419 1.4443 -0.1238 7 7 4.1994 1.9966 -1.0847 8 6 5.5204 1.9094 -1.0405 9 6 6.4039 2.5026 -2.0764 10 6 6.0796 2.7695 -3.3745 11 7 7.1897 3.3043 -3.9347 12 6 7.3170 3.7526 -5.3236 13 6 7.7917 5.2069 -5.3487 14 6 7.9232 5.6677 -6.7775 15 1 7.6911 4.9912 -7.5866 16 6 8.3390 6.9535 -7.0515 17 7 8.4543 7.3555 -8.2983 18 14 8.7398 8.1238 -5.6519 19 1 10.1769 7.9997 -5.2990 20 1 8.4526 9.5181 -6.0749 21 1 7.9086 7.7841 -4.4692 22 7 8.1159 3.3472 -3.0427 23 7 7.6860 2.8789 -1.9247 24 6 5.9919 1.2312 0.0238 25 6 7.4425 0.9677 0.3359 26 16 4.6124 0.7078 0.9866 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9989 3.1540 1.3077 33 1 0.5490 2.1250 1.3970 34 1 2.0699 1.5873 2.1492 35 1 5.1294 2.5928 -3.8564 36 1 8.0413 3.1250 -5.8430 37 1 6.3494 3.6776 -5.8197 38 1 7.0675 5.8345 -4.8292 39 1 8.7593 5.2819 -4.8526 40 1 8.7471 8.2599 -8.4913 41 1 7.5170 0.3955 1.2607 42 1 7.8925 0.4013 -0.4793 43 1 7.9672 1.9160 0.4524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887515637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:35 Heat of formation + Delta-G solvation = 113.324282 kcal Electronic energy + Delta-G solvation = -23563.257044 eV Core-core repulsion = 20157.726571 eV Total energy + Delta-G solvation = -3405.530472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -42.89783 -39.95283 -36.88134 -35.22214 -33.07386 -32.53679 -30.97338 -30.32151 -30.16210 -27.19532 -25.86736 -25.18834 -23.97094 -22.48416 -22.09521 -20.91399 -20.37118 -19.09666 -17.84246 -17.40921 -16.19726 -16.04881 -15.57785 -15.33120 -15.09905 -14.78295 -14.34436 -14.07233 -13.98359 -13.63055 -13.31364 -13.09065 -12.84773 -12.78573 -12.65483 -12.48886 -12.11282 -11.97717 -11.72165 -11.62325 -11.45769 -11.20482 -11.18766 -11.05709 -10.76647 -10.67830 -10.33679 -10.00640 -9.79299 -9.69486 -9.52191 -9.43902 -9.29050 -8.70563 -8.24513 -6.22041 -4.24535 0.51966 1.14545 1.55757 1.84743 2.30089 2.78946 3.22755 3.24717 3.32023 3.37371 3.66593 4.32394 4.36157 4.45664 4.57216 4.81098 4.88293 4.95559 5.05582 5.09394 5.10742 5.11653 5.17480 5.25089 5.41608 5.49337 5.53473 5.59155 5.60271 5.65739 5.69190 5.76353 5.85899 5.89094 5.94612 5.98390 6.02100 6.10945 6.34486 6.76815 7.02023 7.05195 7.52090 7.61129 8.26161 8.77010 8.79920 9.37983 10.89998 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.002642 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.840482 B =10595.012249 C =11318.125938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.015 4.015 4 H 0.102 0.898 5 C -0.149 4.149 6 C 0.052 3.948 7 N -0.456 5.456 8 C 0.145 3.855 9 C 0.027 3.973 10 C -0.015 4.015 11 N -0.273 5.273 12 C 0.121 3.879 13 C -0.020 4.020 14 C -0.531 4.531 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.878 3.122 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 N -0.072 5.072 23 N -0.266 5.266 24 C -0.192 4.192 25 C -0.069 4.069 26 S 0.118 5.882 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.191 0.809 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 -16.646 20.076 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.037 4.037 4 H 0.120 0.880 5 C -0.207 4.207 6 C -0.227 4.227 7 N -0.169 5.169 8 C 0.014 3.986 9 C -0.113 4.113 10 C -0.168 4.168 11 N -0.065 5.065 12 C 0.002 3.998 13 C -0.059 4.059 14 C -0.569 4.569 15 H 0.096 0.904 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.705 3.295 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.191 1.191 22 N -0.052 5.052 23 N -0.133 5.133 24 C -0.315 4.315 25 C -0.128 4.128 26 S 0.374 5.626 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.208 0.792 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.014 -16.361 20.688 29.411 hybrid contribution -0.375 0.939 -0.572 1.161 sum -13.389 -15.422 20.116 28.666 Atomic orbital electron populations 1.21807 0.94804 1.02035 1.02306 1.21652 0.96647 0.94669 1.02732 1.19884 0.85148 0.97987 1.00726 0.87968 1.21967 1.02228 1.00981 0.95526 1.26754 1.00957 1.00788 0.94205 1.66017 1.06240 1.19590 1.25049 1.17102 0.87268 1.00102 0.94128 1.19112 0.92540 1.08087 0.91561 1.23577 0.94721 1.03976 0.94571 1.47901 1.07784 1.37719 1.13137 1.22578 1.04438 1.00157 0.72647 1.19875 0.97578 0.88901 0.99512 1.20778 1.47385 0.98870 0.89881 0.90411 1.24910 0.94309 0.97928 0.95550 1.69880 1.46438 1.18668 1.18117 0.86792 0.79605 0.80251 0.82833 1.19817 1.21070 1.19064 1.78248 1.15640 1.18483 0.92853 1.75206 1.08571 1.13510 1.15971 1.25937 1.00997 1.05672 0.98856 1.20235 0.87594 1.03527 1.01493 1.83718 0.97161 1.53595 1.28121 0.92195 0.92318 0.92381 0.91309 0.91526 0.91929 0.90930 0.92233 0.79228 0.88400 0.87952 0.95764 0.94874 0.92314 0.91779 0.90312 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.77 5.26 -26.73 -0.14 -0.91 16 3 C -0.02 -0.12 2.81 -91.77 -0.26 -0.38 16 4 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 6 C 0.05 0.58 6.02 -13.52 -0.08 0.50 16 7 N -0.46 -6.48 10.51 -8.40 -0.09 -6.57 16 8 C 0.15 2.21 6.67 -84.60 -0.56 1.64 16 9 C 0.03 0.46 6.85 -83.12 -0.57 -0.11 16 10 C -0.01 -0.24 11.52 -16.65 -0.19 -0.43 16 11 N -0.27 -5.01 3.44 -60.96 -0.21 -5.22 16 12 C 0.12 2.21 6.39 -4.04 -0.03 2.18 16 13 C -0.02 -0.47 4.17 -27.88 -0.12 -0.59 16 14 C -0.53 -14.25 9.66 -34.44 -0.33 -14.59 16 15 H 0.08 2.17 7.99 -52.49 -0.42 1.76 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 18 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 22 N -0.07 -1.45 12.88 60.35 0.78 -0.67 16 23 N -0.27 -4.98 11.10 33.06 0.37 -4.62 16 24 C -0.19 -2.48 6.62 -35.55 -0.24 -2.72 16 25 C -0.07 -0.79 9.28 36.01 0.33 -0.45 16 26 S 0.12 1.18 22.62 -107.50 -2.43 -1.26 16 27 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.36 6.56 -51.93 -0.34 0.02 16 34 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 35 H 0.19 2.55 8.06 -52.49 -0.42 2.12 16 36 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.10 1.64 8.07 -51.93 -0.42 1.23 16 38 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 39 H 0.03 0.79 7.54 -51.93 -0.39 0.40 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -31.69 371.09 -7.97 -39.66 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.49 Total: -3.17 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.59 Total: -14.87 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 1.62 Total: -42.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.43 Total: -1.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.69 -7.97 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887515637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.981 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds