Wall clock time and date at job start Tue Mar 31 2020 12:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 H 1.08995 * 109.46755 * 305.00408 * 3 2 1 5 5 C 1.52993 * 109.46897 * 185.00044 * 3 2 1 6 6 N 1.46497 * 109.47058 * 65.00199 * 3 2 1 7 7 C 1.46498 * 119.99991 * 59.99840 * 6 3 2 8 8 C 1.34780 * 119.99962 * 239.99878 * 6 3 2 9 9 O 1.21352 * 120.00080 * 1.00677 * 8 6 3 10 10 C 1.49353 * 119.99778 * 181.00402 * 8 6 3 11 11 O 1.21370 * 119.99979 * 4.06464 * 10 8 6 12 12 N 1.34777 * 119.99909 * 183.78255 * 10 8 6 13 13 C 1.39724 * 120.00063 * 173.53479 * 12 10 8 14 14 C 1.39017 * 120.03898 * 150.58766 * 13 12 10 15 15 C 1.38147 * 120.06170 * 179.74506 * 14 13 12 16 16 C 1.38182 * 120.13805 * 0.55652 * 15 14 13 17 17 C 1.38909 * 120.08375 * 359.69470 * 16 15 14 18 18 O 1.35755 * 120.03231 * 180.02562 * 17 16 15 19 19 C 1.34830 * 116.99579 * 354.28655 * 18 17 16 20 20 H 1.07998 * 120.00532 * 5.09639 * 19 18 17 21 21 C 1.38657 * 120.00152 * 185.08800 * 19 18 17 22 22 N 1.31558 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00401 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46820 * 90.00214 * 23 21 19 25 25 H 1.48497 * 109.47173 * 210.00279 * 23 21 19 26 26 H 1.48497 * 109.46883 * 330.00748 * 23 21 19 27 27 C 1.38762 * 119.94377 * 0.02810 * 17 16 15 28 28 H 1.08998 * 109.47721 * 60.00095 * 1 2 3 29 29 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46967 * 299.99409 * 1 2 3 31 31 H 1.08999 * 109.47242 * 240.00163 * 2 1 3 32 32 H 1.08999 * 109.47216 * 120.00059 * 2 1 3 33 33 H 1.08996 * 109.47874 * 300.00304 * 5 3 2 34 34 H 1.09004 * 109.47375 * 60.00411 * 5 3 2 35 35 H 1.09002 * 109.46781 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47512 * 263.26073 * 7 6 3 37 37 H 1.08995 * 109.47169 * 23.26422 * 7 6 3 38 38 H 1.09003 * 109.46886 * 143.26439 * 7 6 3 39 39 H 0.97005 * 119.99659 * 353.53491 * 12 10 8 40 40 H 1.08001 * 119.97174 * 359.97438 * 14 13 12 41 41 H 1.08000 * 119.92913 * 180.27025 * 15 14 13 42 42 H 1.07999 * 119.95300 * 179.72628 * 16 15 14 43 43 H 0.97002 * 119.99859 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.07569 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9815 -0.8417 5 6 3.5647 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 2.1139 1.5589 2.5337 8 6 0.8713 3.1955 1.2242 9 8 0.4739 3.6310 0.1634 10 6 0.4946 3.8763 2.4991 11 8 0.9512 3.4855 3.5535 12 7 -0.3478 4.9281 2.4780 13 6 -0.8067 5.4798 3.6769 14 6 -1.1319 6.8298 3.7421 15 6 -1.5906 7.3747 4.9258 16 6 -1.7167 6.5828 6.0512 17 6 -1.3884 5.2342 5.9940 18 8 -1.5132 4.4571 7.1001 19 6 -1.8467 5.0777 8.2497 20 1 -2.0821 6.1317 8.2458 21 6 -1.8877 4.3626 9.4369 22 7 -1.6007 3.0788 9.4418 23 14 -2.3505 5.2222 11.0296 24 1 -3.8210 5.1477 11.2230 25 1 -1.6672 4.5570 12.1678 26 1 -1.9314 6.6453 10.9638 27 6 -0.9328 4.6821 4.8053 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9054 0.7160 34 1 3.8531 0.9572 -1.0572 35 1 3.9279 2.4721 -0.1262 36 1 1.3384 0.9232 2.9611 37 1 3.0190 0.9723 2.3766 38 1 2.3276 2.3807 3.2172 39 1 -0.6356 5.3020 1.6304 40 1 -1.0294 7.4525 2.8657 41 1 -1.8468 8.4228 4.9730 42 1 -2.0714 7.0128 6.9762 43 1 -1.6290 2.5786 10.2724 44 1 -0.6774 3.6339 4.7583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918449954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:01 Heat of formation + Delta-G solvation = -54.578175 kcal Electronic energy + Delta-G solvation = -26853.643309 eV Core-core repulsion = 22965.786418 eV Total energy + Delta-G solvation = -3887.856891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.10894 -39.51096 -38.45217 -37.13321 -36.60170 -34.31311 -33.09159 -32.26667 -30.31211 -29.64748 -28.67047 -27.13235 -25.58460 -25.09076 -23.77037 -22.32621 -21.46575 -20.53412 -19.59436 -18.37290 -17.80246 -17.23614 -17.03433 -16.24775 -15.78788 -15.23416 -15.11333 -14.85038 -14.48343 -14.28399 -14.06588 -13.97214 -13.76729 -13.63614 -13.46096 -12.97610 -12.83111 -12.69073 -12.53757 -12.43788 -12.03619 -11.80363 -11.62337 -11.48451 -11.38541 -11.24067 -11.12042 -11.04533 -10.92208 -10.76878 -10.47039 -9.90695 -9.51284 -9.13047 -8.87899 -8.83720 -7.75143 -7.22661 -6.44281 -4.03489 1.25221 2.12127 2.28828 2.32591 3.12725 3.13975 3.19029 3.24168 3.42966 3.96619 4.26228 4.45954 4.56054 4.70941 4.79944 5.01399 5.09911 5.10963 5.22950 5.27609 5.32617 5.47043 5.55839 5.58283 5.61441 5.70805 5.76938 5.83011 5.83527 5.93612 6.04761 6.08025 6.15168 6.24834 6.31876 6.53971 6.72933 6.92872 6.97189 7.03223 7.31366 7.39618 7.43764 7.67790 7.75932 8.00130 8.08026 9.00720 9.70680 10.73463 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.002956 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.116957 B = 9468.441120 C =10546.541050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C 0.129 3.871 4 H 0.103 0.897 5 C -0.162 4.162 6 N -0.577 5.577 7 C 0.055 3.945 8 C 0.511 3.489 9 O -0.526 6.526 10 C 0.499 3.501 11 O -0.482 6.482 12 N -0.637 5.637 13 C 0.173 3.827 14 C -0.232 4.232 15 C -0.056 4.056 16 C -0.243 4.243 17 C 0.168 3.832 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.190 4.190 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.270 0.730 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -2.308 -17.300 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.027 3.973 4 H 0.121 0.879 5 C -0.220 4.220 6 N -0.311 5.311 7 C -0.086 4.086 8 C 0.294 3.706 9 O -0.403 6.403 10 C 0.281 3.719 11 O -0.356 6.356 12 N -0.282 5.282 13 C 0.080 3.920 14 C -0.253 4.253 15 C -0.075 4.075 16 C -0.263 4.263 17 C 0.114 3.886 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.080 0.920 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.890 -2.870 -16.911 18.485 hybrid contribution -0.365 0.573 0.428 0.803 sum 6.524 -2.296 -16.483 17.875 Atomic orbital electron populations 1.21735 0.95230 1.01653 1.02277 1.21895 0.96865 0.95476 1.02802 1.21314 0.95334 0.93719 0.86960 0.87853 1.22151 0.94559 1.02748 1.02552 1.47765 1.48208 1.26439 1.08642 1.22516 0.99729 1.02217 0.84166 1.20077 0.79730 0.81509 0.89319 1.90726 1.53583 1.64517 1.31483 1.20128 0.80326 0.81780 0.89645 1.90741 1.50081 1.62911 1.31889 1.43073 1.44776 1.31038 1.09336 1.17185 0.98162 0.91887 0.84815 1.20268 1.13403 0.92523 0.99138 1.20517 0.96685 0.98423 0.91861 1.21210 1.10816 0.94419 0.99840 1.19071 0.91676 0.89680 0.88208 1.83985 1.75426 1.33946 1.14199 1.21348 1.47493 0.95254 0.82732 0.88951 1.25302 0.96759 0.95760 0.98675 1.70050 1.44508 1.06837 1.28060 0.85707 0.78750 0.79026 0.79911 1.19882 1.20255 1.19160 1.20059 1.09378 1.00785 0.90899 0.92549 0.92551 0.92740 0.90619 0.91280 0.91871 0.91114 0.92048 0.91959 0.91340 0.86842 0.74573 0.87094 0.86827 0.85324 0.92004 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.80 37.16 0.36 -1.05 16 2 C -0.13 -1.05 5.36 -26.73 -0.14 -1.19 16 3 C 0.13 1.20 2.63 -67.93 -0.18 1.02 16 4 H 0.10 1.08 6.90 -51.93 -0.36 0.72 16 5 C -0.16 -1.19 9.18 37.15 0.34 -0.85 16 6 N -0.58 -6.70 2.21 -174.48 -0.39 -7.08 16 7 C 0.06 0.62 8.51 59.85 0.51 1.13 16 8 C 0.51 7.14 7.74 -11.63 -0.09 7.05 16 9 O -0.53 -7.87 15.81 5.49 0.09 -7.78 16 10 C 0.50 7.97 7.54 -11.63 -0.09 7.89 16 11 O -0.48 -8.84 10.57 5.48 0.06 -8.78 16 12 N -0.64 -9.94 5.34 -10.31 -0.06 -10.00 16 13 C 0.17 3.22 6.35 -83.78 -0.53 2.69 16 14 C -0.23 -3.97 9.95 -39.33 -0.39 -4.36 16 15 C -0.06 -1.01 10.03 -39.64 -0.40 -1.40 16 16 C -0.24 -5.25 9.16 -39.35 -0.36 -5.61 16 17 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 18 O -0.17 -4.99 9.76 0.04 0.00 -4.99 16 19 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 23 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.19 -4.25 8.61 -39.19 -0.34 -4.59 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.62 7.75 -51.93 -0.40 0.21 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.06 0.43 6.67 -51.93 -0.35 0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 38 H 0.11 1.52 5.30 -51.98 -0.28 1.24 16 39 H 0.42 5.42 8.28 -40.82 -0.34 5.08 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 3.11 6.15 -52.49 -0.32 2.79 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -32.16 363.83 -6.30 -38.46 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.85 Total: 8.86 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.37 Total: -5.08 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.32 Total: -41.63 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.15 Total: -21.55 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.16 -6.30 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918449954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.116 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds