Wall clock time and date at job start Tue Mar 31 2020 12:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 H 1.08995 * 109.46755 * 305.00408 * 3 2 1 5 5 C 1.52993 * 109.46897 * 185.00044 * 3 2 1 6 6 N 1.46497 * 109.47058 * 65.00199 * 3 2 1 7 7 C 1.46498 * 119.99991 * 59.99840 * 6 3 2 8 8 C 1.34780 * 119.99962 * 239.99878 * 6 3 2 9 9 O 1.21352 * 120.00080 * 1.00677 * 8 6 3 10 10 C 1.49353 * 119.99778 * 181.00402 * 8 6 3 11 11 O 1.21370 * 119.99979 * 4.06464 * 10 8 6 12 12 N 1.34777 * 119.99909 * 183.78255 * 10 8 6 13 13 C 1.39724 * 120.00063 * 173.53479 * 12 10 8 14 14 C 1.39017 * 120.03898 * 150.58766 * 13 12 10 15 15 C 1.38147 * 120.06170 * 179.74506 * 14 13 12 16 16 C 1.38182 * 120.13805 * 0.55652 * 15 14 13 17 17 C 1.38909 * 120.08375 * 359.69470 * 16 15 14 18 18 O 1.35755 * 120.03231 * 180.02562 * 17 16 15 19 19 C 1.34830 * 116.99579 * 354.28655 * 18 17 16 20 20 H 1.07998 * 120.00532 * 5.09639 * 19 18 17 21 21 C 1.38657 * 120.00152 * 185.08800 * 19 18 17 22 22 N 1.31558 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00401 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46820 * 90.00214 * 23 21 19 25 25 H 1.48497 * 109.47173 * 210.00279 * 23 21 19 26 26 H 1.48497 * 109.46883 * 330.00748 * 23 21 19 27 27 C 1.38762 * 119.94377 * 0.02810 * 17 16 15 28 28 H 1.08998 * 109.47721 * 60.00095 * 1 2 3 29 29 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46967 * 299.99409 * 1 2 3 31 31 H 1.08999 * 109.47242 * 240.00163 * 2 1 3 32 32 H 1.08999 * 109.47216 * 120.00059 * 2 1 3 33 33 H 1.08996 * 109.47874 * 300.00304 * 5 3 2 34 34 H 1.09004 * 109.47375 * 60.00411 * 5 3 2 35 35 H 1.09002 * 109.46781 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47512 * 263.26073 * 7 6 3 37 37 H 1.08995 * 109.47169 * 23.26422 * 7 6 3 38 38 H 1.09003 * 109.46886 * 143.26439 * 7 6 3 39 39 H 0.97005 * 119.99659 * 353.53491 * 12 10 8 40 40 H 1.08001 * 119.97174 * 359.97438 * 14 13 12 41 41 H 1.08000 * 119.92913 * 180.27025 * 15 14 13 42 42 H 1.07999 * 119.95300 * 179.72628 * 16 15 14 43 43 H 0.97002 * 119.99859 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.07569 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9815 -0.8417 5 6 3.5647 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 2.1139 1.5589 2.5337 8 6 0.8713 3.1955 1.2242 9 8 0.4739 3.6310 0.1634 10 6 0.4946 3.8763 2.4991 11 8 0.9512 3.4855 3.5535 12 7 -0.3478 4.9281 2.4780 13 6 -0.8067 5.4798 3.6769 14 6 -1.1319 6.8298 3.7421 15 6 -1.5906 7.3747 4.9258 16 6 -1.7167 6.5828 6.0512 17 6 -1.3884 5.2342 5.9940 18 8 -1.5132 4.4571 7.1001 19 6 -1.8467 5.0777 8.2497 20 1 -2.0821 6.1317 8.2458 21 6 -1.8877 4.3626 9.4369 22 7 -1.6007 3.0788 9.4418 23 14 -2.3505 5.2222 11.0296 24 1 -3.8210 5.1477 11.2230 25 1 -1.6672 4.5570 12.1678 26 1 -1.9314 6.6453 10.9638 27 6 -0.9328 4.6821 4.8053 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9054 0.7160 34 1 3.8531 0.9572 -1.0572 35 1 3.9279 2.4721 -0.1262 36 1 1.3384 0.9232 2.9611 37 1 3.0190 0.9723 2.3766 38 1 2.3276 2.3807 3.2172 39 1 -0.6356 5.3020 1.6304 40 1 -1.0294 7.4525 2.8657 41 1 -1.8468 8.4228 4.9730 42 1 -2.0714 7.0128 6.9762 43 1 -1.6290 2.5786 10.2724 44 1 -0.6774 3.6339 4.7583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918449954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:58 Heat of formation + Delta-G solvation = -75.742861 kcal Electronic energy + Delta-G solvation = -26854.561079 eV Core-core repulsion = 22965.786418 eV Total energy + Delta-G solvation = -3888.774661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.35269 -40.93973 -39.98563 -38.36398 -38.01111 -35.73687 -34.26790 -34.00866 -31.33227 -30.98389 -30.26770 -28.13258 -27.39557 -26.42518 -24.63894 -23.74465 -23.03225 -21.78150 -20.64105 -20.00588 -19.28792 -18.65057 -18.33343 -17.41146 -17.17168 -16.77800 -16.64501 -16.15108 -15.90913 -15.66230 -15.47449 -15.38287 -14.91116 -14.61018 -14.52442 -14.32397 -14.26903 -13.96241 -13.67299 -13.52720 -13.31478 -13.17589 -12.87995 -12.74167 -12.70908 -12.47172 -12.35926 -12.13793 -12.12258 -11.98560 -11.66091 -11.44435 -11.29489 -10.77228 -10.44878 -9.88982 -9.38331 -8.92019 -8.45887 -6.15199 -0.06728 0.62768 0.70380 1.12013 1.36241 1.45900 1.54390 1.97888 2.16949 2.31310 2.82047 3.06146 3.16308 3.53829 3.71700 4.01089 4.08644 4.10668 4.20005 4.33472 4.36902 4.44031 4.48271 4.54636 4.62891 4.68292 4.68442 4.82844 4.85898 4.94069 5.01721 5.04827 5.11106 5.13403 5.23374 5.27075 5.31467 5.35557 5.41633 5.61169 5.71156 5.85383 6.02684 6.08829 6.14761 6.58463 6.80292 6.98013 7.78700 8.77479 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.002956 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.116957 B = 9468.441120 C =10546.541050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.124 3.876 4 H 0.094 0.906 5 C -0.157 4.157 6 N -0.568 5.568 7 C 0.058 3.942 8 C 0.514 3.486 9 O -0.537 6.537 10 C 0.496 3.504 11 O -0.510 6.510 12 N -0.628 5.628 13 C 0.179 3.821 14 C -0.204 4.204 15 C -0.045 4.045 16 C -0.252 4.252 17 C 0.131 3.869 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.107 0.893 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.250 1.250 27 C -0.212 4.212 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.433 0.567 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.126 0.874 43 H 0.272 0.728 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 -0.360 -19.541 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.023 3.977 4 H 0.112 0.888 5 C -0.214 4.214 6 N -0.300 5.300 7 C -0.083 4.083 8 C 0.296 3.704 9 O -0.415 6.415 10 C 0.278 3.722 11 O -0.385 6.385 12 N -0.275 5.275 13 C 0.085 3.915 14 C -0.224 4.224 15 C -0.063 4.063 16 C -0.271 4.271 17 C 0.080 3.920 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.124 0.876 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.174 1.174 27 C -0.233 4.233 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.273 0.727 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.517 -0.902 -19.243 20.678 hybrid contribution -0.482 0.029 0.757 0.898 sum 7.035 -0.874 -18.485 19.798 Atomic orbital electron populations 1.21739 0.96543 1.01918 1.00759 1.21906 0.95599 0.94651 1.04348 1.21582 0.96916 0.94103 0.85112 0.88816 1.22130 0.92515 1.02633 1.04162 1.47909 1.46819 1.25465 1.09825 1.22441 1.00790 1.01475 0.83641 1.19675 0.80424 0.82262 0.88089 1.90719 1.54430 1.65184 1.31206 1.20664 0.79810 0.81479 0.90204 1.90766 1.50984 1.63480 1.33249 1.43015 1.44475 1.31040 1.09001 1.17304 0.97081 0.92474 0.84646 1.20873 1.09360 0.91706 1.00468 1.21032 0.94684 1.00210 0.90412 1.21374 1.10911 0.93428 1.01412 1.19578 0.93333 0.91243 0.87847 1.83953 1.78356 1.35919 1.15526 1.21899 1.47769 0.96109 0.83203 0.87593 1.26658 0.96472 0.96499 1.02556 1.70212 1.47563 1.08991 1.29199 0.84555 0.78785 0.78332 0.74321 1.18712 1.19776 1.17362 1.20070 1.10803 1.00373 0.92062 0.92834 0.91452 0.95429 0.87936 0.90767 0.91076 0.88765 0.92972 0.92830 0.88089 0.89123 0.72704 0.82118 0.82062 0.85600 0.91880 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.80 71.98 0.71 -2.01 16 2 C -0.13 -1.74 5.36 30.60 0.16 -1.58 16 3 C 0.12 2.09 2.63 44.99 0.12 2.21 16 4 H 0.09 1.81 6.90 -2.39 -0.02 1.79 16 5 C -0.16 -1.88 9.18 71.98 0.66 -1.22 16 6 N -0.57 -12.89 2.21 -824.30 -1.82 -14.71 16 7 C 0.06 1.30 8.51 127.77 1.09 2.39 16 8 C 0.51 14.24 7.74 87.24 0.68 14.92 16 9 O -0.54 -15.59 15.81 -3.25 -0.05 -15.64 16 10 C 0.50 16.04 7.54 87.24 0.66 16.70 16 11 O -0.51 -19.62 10.57 -3.31 -0.03 -19.66 16 12 N -0.63 -18.98 5.34 -304.90 -1.63 -20.61 16 13 C 0.18 6.51 6.35 38.20 0.24 6.75 16 14 C -0.20 -6.16 9.95 22.44 0.22 -5.93 16 15 C -0.05 -1.46 10.03 22.23 0.22 -1.23 16 16 C -0.25 -10.81 9.16 22.42 0.21 -10.61 16 17 C 0.13 6.78 6.64 22.56 0.15 6.93 16 18 O -0.23 -14.38 9.76 -22.79 -0.22 -14.60 16 19 C -0.41 -24.40 9.49 67.92 0.64 -23.75 16 20 H 0.11 5.63 5.20 -2.91 -0.02 5.62 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 22 N -0.92 -57.68 13.67 21.61 0.30 -57.38 16 23 Si 1.02 43.10 29.55 68.60 2.03 45.12 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 27 C -0.21 -9.91 8.61 22.52 0.19 -9.71 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 0.62 7.75 -2.39 -0.02 0.61 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.98 7.50 -2.39 -0.02 0.96 16 33 H 0.07 0.75 6.67 -2.39 -0.02 0.74 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 1.57 6.44 -2.39 -0.02 1.56 16 38 H 0.09 2.53 5.30 -3.27 -0.02 2.51 16 39 H 0.43 10.27 8.28 -92.70 -0.77 9.50 16 40 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.13 5.40 5.63 -2.91 -0.02 5.38 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.11 5.51 6.15 -2.91 -0.02 5.49 16 Total: -1.00 -77.38 363.83 5.25 -72.13 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.27 Total: 32.45 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.42 Total: -7.10 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -3.16 Total: -92.70 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.31 Total: -49.91 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.38 5.25 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918449954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.610 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds