Wall clock time and date at job start Tue Mar 31 2020 12:08:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.46968 * 2 1
4 4 H 1.09004 * 109.47392 * 306.89981 * 3 2 1
5 5 C 1.53004 * 109.47290 * 66.90045 * 3 2 1
6 6 C 1.53002 * 109.46983 * 182.34397 * 5 3 2
7 7 F 1.39897 * 109.47280 * 54.91502 * 6 5 3
8 8 F 1.39902 * 109.46515 * 174.90982 * 6 5 3
9 9 F 1.39897 * 109.47355 * 294.91046 * 6 5 3
10 10 C 1.50700 * 109.47206 * 186.90002 * 3 2 1
11 11 O 1.21277 * 120.00241 * 270.51167 * 10 3 2
12 12 N 1.34781 * 119.99904 * 90.51289 * 10 3 2
13 13 C 1.46497 * 119.99989 * 180.02562 * 12 10 3
14 14 H 1.08997 * 115.49345 * 350.37298 * 13 12 10
15 15 C 1.53006 * 117.43934 * 204.99594 * 13 12 10
16 16 H 1.09003 * 119.54188 * 4.12192 * 15 13 12
17 17 C 1.54391 * 118.11863 * 159.20609 * 15 13 12
18 18 N 1.48154 * 104.61212 * 87.19723 * 17 15 13
19 19 C 1.36939 * 127.83926 * 140.41263 * 18 17 15
20 20 H 1.08005 * 119.99754 * 343.12152 * 19 18 17
21 21 C 1.38812 * 120.00196 * 163.11532 * 19 18 17
22 22 N 1.31618 * 119.99798 * 352.44266 * 21 19 18
23 23 Si 1.86794 * 120.00104 * 172.43544 * 21 19 18
24 24 H 1.48506 * 109.46771 * 94.96853 * 23 21 19
25 25 H 1.48492 * 109.47222 * 214.97096 * 23 21 19
26 26 H 1.48501 * 109.47416 * 334.97184 * 23 21 19
27 27 C 1.48140 * 104.32283 * 320.40961 * 18 17 15
28 28 C 1.53005 * 117.44340 * 135.76115 * 13 12 10
29 29 H 1.09000 * 119.53967 * 355.87721 * 28 13 12
30 30 H 1.08996 * 109.47145 * 177.85097 * 1 2 3
31 31 H 1.08995 * 109.47267 * 297.85202 * 1 2 3
32 32 H 1.09000 * 109.46799 * 57.85402 * 1 2 3
33 33 H 1.08998 * 109.47520 * 239.99846 * 2 1 3
34 34 H 1.08998 * 109.47118 * 119.99742 * 2 1 3
35 35 H 1.08992 * 109.47333 * 302.34699 * 5 3 2
36 36 H 1.08998 * 109.46691 * 62.34814 * 5 3 2
37 37 H 0.97002 * 120.00048 * 359.97438 * 12 10 3
38 38 H 1.08995 * 110.40670 * 205.97353 * 17 15 13
39 39 H 1.08996 * 110.41448 * 328.41571 * 17 15 13
40 40 H 0.96996 * 120.00140 * 179.97438 * 22 21 19
41 41 H 1.09004 * 110.41013 * 158.37279 * 27 18 17
42 42 H 1.09004 * 110.41163 * 280.68303 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5794 1.9908 -0.8218
5 6 1.6764 2.1120 1.3269
6 6 2.1347 3.5716 1.3040
7 9 1.5912 4.2136 0.1862
8 9 1.7006 4.2148 2.4681
9 9 3.5312 3.6209 1.2371
10 6 3.5373 1.4460 -0.1707
11 8 4.2587 1.3960 0.8029
12 7 4.0747 1.5047 -1.4054
13 6 5.5302 1.5075 -1.5713
14 1 6.1068 1.6251 -0.6538
15 6 6.0934 2.1426 -2.8444
16 1 5.4166 2.6277 -3.5478
17 6 7.5678 2.6006 -2.8381
18 7 8.3347 1.3972 -3.2365
19 6 9.4251 1.3312 -4.0623
20 1 9.6580 2.1586 -4.7163
21 6 10.2310 0.2010 -4.0588
22 7 10.0380 -0.7421 -3.1613
23 14 11.5894 0.0187 -5.3280
24 1 12.8711 0.5015 -4.7540
25 1 11.7241 -1.4108 -5.7070
26 1 11.2530 0.8204 -6.5319
27 6 7.6543 0.2814 -2.5388
28 6 6.1172 0.6106 -2.6631
29 1 5.4580 -0.0456 -3.2316
30 1 -0.3633 -1.0269 -0.0385
31 1 -0.3633 0.4801 0.9086
32 1 -0.3633 0.5468 -0.8701
33 1 1.8934 -0.5138 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 0.5967 2.0724 1.4700
36 1 2.1708 1.5887 2.1453
37 1 3.4976 1.5444 -2.1841
38 1 7.7194 3.4037 -3.5593
39 1 7.8610 2.9247 -1.8396
40 1 10.6009 -1.5320 -3.1591
41 1 7.8711 -0.6651 -3.0340
42 1 7.9626 0.2421 -1.4940
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001115130857.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:44
Heat of formation + Delta-G solvation = -142.225036 kcal
Electronic energy + Delta-G solvation = -27788.257125 eV
Core-core repulsion = 23354.742840 eV
Total energy + Delta-G solvation = -4433.514285 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 1.55 seconds
Orbital eigenvalues (eV)
-50.20364 -47.75815 -47.58954 -40.13152 -38.44960 -35.95610 -34.48627 -32.61857
-31.28843 -30.30585 -27.30816 -26.99382 -25.53407 -23.51020 -22.69863 -21.28593
-20.51102 -19.93968 -19.28395 -18.66951 -18.48186 -17.76153 -17.29669 -16.84743
-16.19666 -15.08746 -14.79388 -14.69864 -14.61650 -14.52568 -14.37802 -14.12485
-13.79996 -13.74703 -13.70010 -13.44380 -13.22737 -13.16761 -12.74239 -12.41336
-12.25816 -12.22923 -11.95007 -11.57532 -11.47200 -11.29814 -11.17914 -10.96667
-10.83996 -10.34504 -10.20426 -10.17049 -9.78253 -9.73143 -9.18059 -8.74376
-8.32953 -6.85967 -5.80404 -3.15700 2.52868 2.61802 3.00753 3.37929
3.43317 3.45453 3.60265 3.70326 3.92084 4.30036 4.38443 4.42499
4.47889 4.56294 4.79444 4.86391 4.94399 5.11398 5.16506 5.27632
5.34970 5.37636 5.41539 5.57256 5.59965 5.65924 5.81502 5.83628
5.89404 6.06257 6.22254 6.51866 6.69534 6.79938 6.88482 7.34751
7.52672 7.54335 7.71156 8.20381 8.23165 9.10425 9.72806 10.50547
11.33928
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.024258 B = 0.002793 C = 0.002642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.992007 B =10021.107929 C =10595.462268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.110 4.110
3 C -0.111 4.111
4 H 0.103 0.897
5 C -0.152 4.152
6 C 0.445 3.555
7 F -0.188 7.188
8 F -0.187 7.187
9 F -0.165 7.165
10 C 0.512 3.488
11 O -0.524 6.524
12 N -0.694 5.694
13 C 0.095 3.905
14 H 0.132 0.868
15 C -0.183 4.183
16 H 0.101 0.899
17 C 0.155 3.845
18 N -0.593 5.593
19 C -0.228 4.228
20 H 0.077 0.923
21 C -0.005 4.005
22 N -0.914 5.914
23 Si 0.914 3.086
24 H -0.287 1.287
25 H -0.289 1.289
26 H -0.280 1.280
27 C 0.189 3.811
28 C -0.183 4.183
29 H 0.105 0.895
30 H 0.062 0.938
31 H 0.058 0.942
32 H 0.059 0.941
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.117 0.883
36 H 0.123 0.877
37 H 0.398 0.602
38 H 0.051 0.949
39 H 0.028 0.972
40 H 0.255 0.745
41 H 0.088 0.912
42 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.164 3.824 6.988 24.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.148 4.148
3 C -0.132 4.132
4 H 0.121 0.879
5 C -0.191 4.191
6 C 0.391 3.609
7 F -0.170 7.170
8 F -0.169 7.169
9 F -0.147 7.147
10 C 0.297 3.703
11 O -0.399 6.399
12 N -0.342 5.342
13 C -0.011 4.011
14 H 0.149 0.851
15 C -0.204 4.204
16 H 0.119 0.881
17 C 0.029 3.971
18 N -0.316 5.316
19 C -0.356 4.356
20 H 0.094 0.906
21 C -0.202 4.202
22 N -0.560 5.560
23 Si 0.744 3.256
24 H -0.215 1.215
25 H -0.216 1.216
26 H -0.205 1.205
27 C 0.063 3.937
28 C -0.204 4.204
29 H 0.123 0.877
30 H 0.081 0.919
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.135 0.865
36 H 0.141 0.859
37 H 0.231 0.769
38 H 0.070 0.930
39 H 0.045 0.955
40 H 0.065 0.935
41 H 0.106 0.894
42 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -22.380 3.681 7.616 23.925
hybrid contribution 0.342 0.204 -1.150 1.217
sum -22.038 3.885 6.466 23.293
Atomic orbital electron populations
1.21858 0.94652 1.02512 1.02187 1.21432 0.96528 0.92726 1.04113
1.21402 0.93916 0.99859 0.98043 0.87931 1.22852 1.05193 0.89552
1.01461 1.20630 0.76290 0.90634 0.73314 1.93165 1.85894 1.84472
1.53424 1.93176 1.89652 1.84345 1.49689 1.93324 1.28653 1.96899
1.95780 1.20324 0.89866 0.76609 0.83498 1.90740 1.62270 1.48365
1.38518 1.45371 1.07131 1.73962 1.07740 1.21900 0.79491 1.04249
0.95459 0.85057 1.24258 0.99375 0.97823 0.98967 0.88088 1.21135
0.87191 0.91180 0.97627 1.45118 1.31678 1.00556 1.54249 1.18995
1.00466 1.02771 1.13396 0.90564 1.24935 0.98498 0.98089 0.98679
1.69891 1.41090 1.10063 1.34986 0.86086 0.81740 0.77088 0.80730
1.21454 1.21571 1.20502 1.21630 0.82226 0.94025 0.95865 1.25464
1.00898 0.93042 1.01039 0.87729 0.91878 0.92348 0.92209 0.90416
0.90430 0.86513 0.85905 0.76859 0.93004 0.95468 0.93508 0.89364
0.95233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.74 9.65 37.16 0.36 -0.38 16
2 C -0.11 -0.75 5.37 -26.73 -0.14 -0.89 16
3 C -0.11 -0.92 2.06 -91.77 -0.19 -1.11 16
4 H 0.10 0.69 7.61 -51.93 -0.39 0.29 16
5 C -0.15 -1.21 4.46 -26.73 -0.12 -1.33 16
6 C 0.45 4.81 3.12 37.16 0.12 4.93 16
7 F -0.19 -2.00 16.56 2.25 0.04 -1.97 16
8 F -0.19 -2.05 17.32 2.25 0.04 -2.01 16
9 F -0.17 -2.40 13.99 2.25 0.03 -2.37 16
10 C 0.51 6.67 5.53 -10.98 -0.06 6.61 16
11 O -0.52 -8.90 13.91 5.56 0.08 -8.82 16
12 N -0.69 -9.03 5.56 -53.80 -0.30 -9.33 16
13 C 0.09 1.60 5.92 -67.93 -0.40 1.20 16
14 H 0.13 2.57 7.40 -51.93 -0.38 2.18 16
15 C -0.18 -3.25 6.98 -89.22 -0.62 -3.87 16
16 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16
17 C 0.16 3.31 7.04 -2.40 -0.02 3.29 16
18 N -0.59 -15.28 3.38 -166.73 -0.56 -15.85 16
19 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16
20 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16
21 C 0.00 -0.13 5.41 -17.43 -0.09 -0.23 16
22 N -0.91 -26.82 10.87 55.49 0.60 -26.22 16
23 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16
24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
27 C 0.19 4.58 5.74 -0.57 0.00 4.57 16
28 C -0.18 -3.44 7.34 -87.38 -0.64 -4.08 16
29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16
30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
31 H 0.06 0.23 6.68 -51.93 -0.35 -0.11 16
32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16
33 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16
34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
35 H 0.12 0.57 6.57 -51.93 -0.34 0.23 16
36 H 0.12 1.03 7.77 -51.93 -0.40 0.63 16
37 H 0.40 3.98 8.83 -40.82 -0.36 3.62 16
38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16
41 H 0.09 2.37 6.55 -51.93 -0.34 2.03 16
42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16
LS Contribution 352.27 15.07 5.31 5.31
Total: -1.00 -32.66 352.27 -7.69 -40.35
By element:
Atomic # 1 Polarization: 7.77 SS G_CDS: -5.92 Total: 1.85 kcal
Atomic # 6 Polarization: 4.16 SS G_CDS: -1.97 Total: 2.19 kcal
Atomic # 7 Polarization: -51.14 SS G_CDS: -0.26 Total: -51.40 kcal
Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal
Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.34 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -32.66 -7.69 -40.35 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115130857.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.878 kcal
(2) G-P(sol) polarization free energy of solvation -32.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.225 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.55 seconds