Wall clock time and date at job start Tue Mar 31 2020 12:08:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.46968 * 2 1
4 4 H 1.09004 * 109.47392 * 306.89981 * 3 2 1
5 5 C 1.53004 * 109.47290 * 66.90045 * 3 2 1
6 6 C 1.53002 * 109.46983 * 182.34397 * 5 3 2
7 7 F 1.39897 * 109.47280 * 54.91502 * 6 5 3
8 8 F 1.39902 * 109.46515 * 174.90982 * 6 5 3
9 9 F 1.39897 * 109.47355 * 294.91046 * 6 5 3
10 10 C 1.50700 * 109.47206 * 186.90002 * 3 2 1
11 11 O 1.21277 * 120.00241 * 270.51167 * 10 3 2
12 12 N 1.34781 * 119.99904 * 90.51289 * 10 3 2
13 13 C 1.46497 * 119.99989 * 180.02562 * 12 10 3
14 14 H 1.08997 * 115.49345 * 350.37298 * 13 12 10
15 15 C 1.53006 * 117.43934 * 204.99594 * 13 12 10
16 16 H 1.09003 * 119.54188 * 4.12192 * 15 13 12
17 17 C 1.54391 * 118.11863 * 159.20609 * 15 13 12
18 18 N 1.48154 * 104.61212 * 87.19723 * 17 15 13
19 19 C 1.36939 * 127.83926 * 140.41263 * 18 17 15
20 20 H 1.08005 * 119.99754 * 343.12152 * 19 18 17
21 21 C 1.38812 * 120.00196 * 163.11532 * 19 18 17
22 22 N 1.31618 * 119.99798 * 352.44266 * 21 19 18
23 23 Si 1.86794 * 120.00104 * 172.43544 * 21 19 18
24 24 H 1.48506 * 109.46771 * 94.96853 * 23 21 19
25 25 H 1.48492 * 109.47222 * 214.97096 * 23 21 19
26 26 H 1.48501 * 109.47416 * 334.97184 * 23 21 19
27 27 C 1.48140 * 104.32283 * 320.40961 * 18 17 15
28 28 C 1.53005 * 117.44340 * 135.76115 * 13 12 10
29 29 H 1.09000 * 119.53967 * 355.87721 * 28 13 12
30 30 H 1.08996 * 109.47145 * 177.85097 * 1 2 3
31 31 H 1.08995 * 109.47267 * 297.85202 * 1 2 3
32 32 H 1.09000 * 109.46799 * 57.85402 * 1 2 3
33 33 H 1.08998 * 109.47520 * 239.99846 * 2 1 3
34 34 H 1.08998 * 109.47118 * 119.99742 * 2 1 3
35 35 H 1.08992 * 109.47333 * 302.34699 * 5 3 2
36 36 H 1.08998 * 109.46691 * 62.34814 * 5 3 2
37 37 H 0.97002 * 120.00048 * 359.97438 * 12 10 3
38 38 H 1.08995 * 110.40670 * 205.97353 * 17 15 13
39 39 H 1.08996 * 110.41448 * 328.41571 * 17 15 13
40 40 H 0.96996 * 120.00140 * 179.97438 * 22 21 19
41 41 H 1.09004 * 110.41013 * 158.37279 * 27 18 17
42 42 H 1.09004 * 110.41163 * 280.68303 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5794 1.9908 -0.8218
5 6 1.6764 2.1120 1.3269
6 6 2.1347 3.5716 1.3040
7 9 1.5912 4.2136 0.1862
8 9 1.7006 4.2148 2.4681
9 9 3.5312 3.6209 1.2371
10 6 3.5373 1.4460 -0.1707
11 8 4.2587 1.3960 0.8029
12 7 4.0747 1.5047 -1.4054
13 6 5.5302 1.5075 -1.5713
14 1 6.1068 1.6251 -0.6538
15 6 6.0934 2.1426 -2.8444
16 1 5.4166 2.6277 -3.5478
17 6 7.5678 2.6006 -2.8381
18 7 8.3347 1.3972 -3.2365
19 6 9.4251 1.3312 -4.0623
20 1 9.6580 2.1586 -4.7163
21 6 10.2310 0.2010 -4.0588
22 7 10.0380 -0.7421 -3.1613
23 14 11.5894 0.0187 -5.3280
24 1 12.8711 0.5015 -4.7540
25 1 11.7241 -1.4108 -5.7070
26 1 11.2530 0.8204 -6.5319
27 6 7.6543 0.2814 -2.5388
28 6 6.1172 0.6106 -2.6631
29 1 5.4580 -0.0456 -3.2316
30 1 -0.3633 -1.0269 -0.0385
31 1 -0.3633 0.4801 0.9086
32 1 -0.3633 0.5468 -0.8701
33 1 1.8934 -0.5138 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 0.5967 2.0724 1.4700
36 1 2.1708 1.5887 2.1453
37 1 3.4976 1.5444 -2.1841
38 1 7.7194 3.4037 -3.5593
39 1 7.8610 2.9247 -1.8396
40 1 10.6009 -1.5320 -3.1591
41 1 7.8711 -0.6651 -3.0340
42 1 7.9626 0.2421 -1.4940
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001115130857.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:42
Heat of formation + Delta-G solvation = -163.017859 kcal
Electronic energy + Delta-G solvation = -27789.158769 eV
Core-core repulsion = 23354.742840 eV
Total energy + Delta-G solvation = -4434.415929 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 1.99 seconds
Orbital eigenvalues (eV)
-51.06978 -48.58897 -48.53109 -41.26792 -39.92729 -36.74290 -36.06463 -34.29416
-32.12780 -31.85399 -28.79160 -28.25477 -27.27375 -24.39146 -23.74139 -22.59965
-21.96790 -21.06727 -20.81698 -19.54897 -19.32502 -18.86917 -18.58537 -18.23980
-17.52494 -16.74761 -16.04891 -15.76425 -15.50091 -15.48442 -15.25969 -15.16819
-14.98212 -14.89695 -14.69942 -14.64818 -14.61374 -14.18796 -13.90867 -13.70342
-13.34225 -13.20345 -12.97115 -12.86207 -12.79891 -12.73546 -12.61966 -12.08282
-12.03441 -11.92664 -11.86871 -11.70371 -11.62838 -10.91320 -10.80657 -10.69069
-9.69526 -8.92899 -7.93129 -5.31543 1.46452 1.47906 1.51323 1.58140
1.82283 1.94493 2.47527 2.83457 2.85952 2.96413 3.13195 3.27342
3.49855 3.63261 3.74237 3.83941 3.93732 3.98297 4.09091 4.17152
4.33185 4.35529 4.42274 4.50453 4.57057 4.72842 4.81919 4.91627
4.92167 4.97160 5.20986 5.24665 5.26342 5.39441 5.44757 5.48936
5.54319 5.62313 6.15333 6.50944 6.98602 7.22914 7.65245 8.44456
9.20769
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.024258 B = 0.002793 C = 0.002642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.992007 B =10021.107929 C =10595.462268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.107 4.107
3 C -0.100 4.100
4 H 0.129 0.871
5 C -0.147 4.147
6 C 0.439 3.561
7 F -0.186 7.186
8 F -0.190 7.190
9 F -0.192 7.192
10 C 0.506 3.494
11 O -0.568 6.568
12 N -0.683 5.683
13 C 0.115 3.885
14 H 0.100 0.900
15 C -0.164 4.164
16 H 0.138 0.862
17 C 0.148 3.852
18 N -0.617 5.617
19 C -0.243 4.243
20 H 0.083 0.917
21 C -0.063 4.063
22 N -0.948 5.948
23 Si 0.984 3.016
24 H -0.287 1.287
25 H -0.292 1.292
26 H -0.265 1.265
27 C 0.191 3.809
28 C -0.181 4.181
29 H 0.130 0.870
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.077 0.923
34 H 0.067 0.933
35 H 0.156 0.844
36 H 0.116 0.884
37 H 0.417 0.583
38 H 0.065 0.935
39 H 0.016 0.984
40 H 0.250 0.750
41 H 0.055 0.945
42 H -0.004 1.004
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.134 4.492 5.731 27.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.145 4.145
3 C -0.121 4.121
4 H 0.147 0.853
5 C -0.185 4.185
6 C 0.385 3.615
7 F -0.167 7.167
8 F -0.171 7.171
9 F -0.174 7.174
10 C 0.294 3.706
11 O -0.446 6.446
12 N -0.333 5.333
13 C 0.008 3.992
14 H 0.118 0.882
15 C -0.185 4.185
16 H 0.156 0.844
17 C 0.022 3.978
18 N -0.340 5.340
19 C -0.372 4.372
20 H 0.101 0.899
21 C -0.256 4.256
22 N -0.596 5.596
23 Si 0.811 3.189
24 H -0.214 1.214
25 H -0.218 1.218
26 H -0.189 1.189
27 C 0.065 3.935
28 C -0.203 4.203
29 H 0.148 0.852
30 H 0.085 0.915
31 H 0.088 0.912
32 H 0.089 0.911
33 H 0.095 0.905
34 H 0.085 0.915
35 H 0.174 0.826
36 H 0.134 0.866
37 H 0.255 0.745
38 H 0.083 0.917
39 H 0.034 0.966
40 H 0.059 0.941
41 H 0.074 0.926
42 H 0.014 0.986
Dipole moment (debyes) X Y Z Total
from point charges -25.409 4.380 6.341 26.552
hybrid contribution 1.267 0.059 -0.660 1.429
sum -24.142 4.439 5.682 25.196
Atomic orbital electron populations
1.21853 0.92553 1.03173 1.03290 1.21439 0.98183 0.91171 1.03677
1.21463 0.89913 1.01489 0.99243 0.85269 1.22963 1.07413 0.87083
1.00993 1.21106 0.75059 0.92110 0.73225 1.93164 1.85628 1.84664
1.53271 1.93167 1.89485 1.84609 1.49878 1.93275 1.31126 1.97089
1.95915 1.21268 0.91889 0.74962 0.82531 1.90732 1.63855 1.50059
1.39922 1.45213 1.05261 1.73821 1.08976 1.21366 0.81784 1.02429
0.93636 0.88202 1.24162 0.97765 0.96514 1.00026 0.84390 1.21277
0.89041 0.90299 0.97194 1.45412 1.32009 1.02452 1.54173 1.19418
1.01194 1.02961 1.13627 0.89893 1.25822 1.01096 0.97905 1.00795
1.70102 1.42137 1.10472 1.36862 0.84998 0.78483 0.76817 0.78596
1.21390 1.21795 1.18914 1.21345 0.86219 0.92680 0.93295 1.25127
0.97684 0.94247 1.03222 0.85215 0.91540 0.91238 0.91099 0.90467
0.91466 0.82589 0.86585 0.74519 0.91698 0.96633 0.94056 0.92609
0.98637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.84 9.65 71.98 0.69 -0.14 16
2 C -0.11 -1.13 5.37 30.59 0.16 -0.97 16
3 C -0.10 -1.38 2.06 -11.54 -0.02 -1.40 16
4 H 0.13 1.15 7.61 -2.39 -0.02 1.13 16
5 C -0.15 -1.95 4.46 30.60 0.14 -1.81 16
6 C 0.44 8.74 3.12 71.98 0.22 8.97 16
7 F -0.19 -3.48 16.56 44.97 0.74 -2.74 16
8 F -0.19 -3.89 17.32 44.97 0.78 -3.12 16
9 F -0.19 -5.54 13.99 44.97 0.63 -4.91 16
10 C 0.51 12.46 5.53 87.66 0.49 12.95 16
11 O -0.57 -19.43 13.91 -3.02 -0.04 -19.47 16
12 N -0.68 -16.32 5.56 -442.52 -2.46 -18.78 16
13 C 0.12 3.82 5.92 45.00 0.27 4.09 16
14 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16
15 C -0.16 -5.54 6.98 -9.88 -0.07 -5.61 16
16 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16
17 C 0.15 6.29 7.04 86.53 0.61 6.90 16
18 N -0.62 -32.57 3.38 -681.40 -2.30 -34.87 16
19 C -0.24 -13.81 10.35 84.03 0.87 -12.94 16
20 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16
21 C -0.06 -3.58 5.41 84.86 0.46 -3.12 16
22 N -0.95 -57.86 10.87 21.65 0.24 -57.62 16
23 Si 0.98 45.67 29.56 68.60 2.03 47.70 16
24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16
25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16
26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
27 C 0.19 9.67 5.74 87.73 0.50 10.18 16
28 C -0.18 -6.73 7.34 -8.69 -0.06 -6.79 16
29 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16
30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16
31 H 0.07 0.24 6.68 -2.39 -0.02 0.23 16
32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16
33 H 0.08 0.85 8.13 -2.39 -0.02 0.83 16
34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.16 0.85 6.57 -2.39 -0.02 0.83 16
36 H 0.12 1.78 7.77 -2.39 -0.02 1.76 16
37 H 0.42 6.79 8.83 -92.71 -0.82 5.98 16
38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16
39 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16
40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
41 H 0.06 3.16 6.55 -2.38 -0.02 3.14 16
42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16
Total: -1.00 -75.09 352.27 4.10 -70.99
By element:
Atomic # 1 Polarization: 12.30 SS G_CDS: 0.23 Total: 12.54 kcal
Atomic # 6 Polarization: 6.03 SS G_CDS: 4.26 Total: 10.28 kcal
Atomic # 7 Polarization: -106.74 SS G_CDS: -4.53 Total: -111.27 kcal
Atomic # 8 Polarization: -19.43 SS G_CDS: -0.04 Total: -19.47 kcal
Atomic # 9 Polarization: -12.92 SS G_CDS: 2.15 Total: -10.76 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal
Total: -75.09 4.10 -70.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115130857.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.025 kcal
(2) G-P(sol) polarization free energy of solvation -75.091 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.99 seconds