Wall clock time and date at job start Tue Mar 31 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 H 1.08995 * 109.46421 * 179.05175 * 3 2 1 5 5 C 1.52998 * 109.47180 * 59.05792 * 3 2 1 6 6 C 1.52998 * 109.47166 * 63.63127 * 5 3 2 7 7 F 1.39898 * 109.47285 * 53.31615 * 6 5 3 8 8 F 1.39909 * 109.47027 * 173.31295 * 6 5 3 9 9 F 1.39898 * 109.47283 * 293.31246 * 6 5 3 10 10 C 1.50692 * 109.47106 * 299.05443 * 3 2 1 11 11 O 1.21283 * 119.99943 * 112.85081 * 10 3 2 12 12 N 1.34778 * 120.00188 * 292.84954 * 10 3 2 13 13 C 1.46499 * 119.99977 * 185.03598 * 12 10 3 14 14 H 1.09000 * 115.49584 * 9.62117 * 13 12 10 15 15 C 1.53005 * 117.44374 * 224.23972 * 13 12 10 16 16 H 1.09002 * 119.53850 * 4.11689 * 15 13 12 17 17 C 1.54385 * 118.90001 * 161.25714 * 15 13 12 18 18 N 1.48145 * 104.62061 * 87.20918 * 17 15 13 19 19 C 1.36937 * 127.83876 * 140.38714 * 18 17 15 20 20 H 1.07994 * 120.00228 * 201.40825 * 19 18 17 21 21 C 1.38818 * 119.99888 * 21.41298 * 19 18 17 22 22 N 1.31623 * 119.99714 * 6.50989 * 21 19 18 23 23 Si 1.86794 * 119.99999 * 186.51220 * 21 19 18 24 24 H 1.48497 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46787 * 120.00096 * 23 21 19 26 26 H 1.48501 * 109.47075 * 239.99541 * 23 21 19 27 27 C 1.48151 * 104.32329 * 320.41615 * 18 17 15 28 28 C 1.53002 * 117.44340 * 154.99983 * 13 12 10 29 29 H 1.09008 * 119.53654 * 355.88126 * 28 13 12 30 30 H 1.09007 * 109.47130 * 184.30922 * 1 2 3 31 31 H 1.08996 * 109.47579 * 304.31208 * 1 2 3 32 32 H 1.09004 * 109.47065 * 64.31499 * 1 2 3 33 33 H 1.08998 * 109.47292 * 239.99746 * 2 1 3 34 34 H 1.09004 * 109.46556 * 119.99680 * 2 1 3 35 35 H 1.09000 * 109.47280 * 183.63405 * 5 3 2 36 36 H 1.09001 * 109.47139 * 303.63541 * 5 3 2 37 37 H 0.96997 * 119.99770 * 5.03644 * 12 10 3 38 38 H 1.09001 * 110.40195 * 205.99667 * 17 15 13 39 39 H 1.09003 * 110.40614 * 328.30624 * 17 15 13 40 40 H 0.97003 * 119.99655 * 180.02562 * 22 21 19 41 41 H 1.08998 * 110.40218 * 280.80066 * 27 18 17 42 42 H 1.09005 * 110.40475 * 158.36965 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0170 5 6 1.5107 2.1706 1.2372 6 6 2.0745 1.5109 2.4973 7 9 3.4690 1.4460 2.4056 8 9 1.7156 2.2658 3.6193 9 9 1.5545 0.2179 2.6193 10 6 1.5569 2.1461 -1.2420 11 8 0.7552 3.0518 -1.1528 12 7 2.0157 1.7689 -2.4518 13 6 1.6323 2.5226 -3.6481 14 1 1.1128 3.4629 -3.4638 15 6 1.2221 1.7210 -4.8852 16 1 1.1604 0.6344 -4.8253 17 6 0.4099 2.4239 -5.9941 18 7 1.4318 3.0340 -6.8763 19 6 1.4260 3.1062 -8.2438 20 1 2.3513 3.2542 -8.7807 21 6 0.2307 2.9891 -8.9399 22 7 -0.9099 2.9376 -8.2851 23 14 0.2410 2.9047 -10.8059 24 1 1.6403 2.9814 -11.2972 25 1 -0.3683 1.6241 -11.2468 26 1 -0.5408 4.0405 -11.3572 27 6 2.4618 3.5477 -5.9435 28 6 2.5749 2.4620 -4.8518 29 1 3.5211 1.9274 -4.7671 30 1 -0.3634 -1.0248 0.0772 31 1 -0.3634 0.5793 0.8488 32 1 -0.3633 0.4454 -0.9262 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8203 3.2152 1.2043 36 1 0.4222 2.1146 1.2538 37 1 2.5997 0.9985 -2.5304 38 1 -0.1853 1.6976 -6.5476 39 1 -0.2326 3.1929 -5.5653 40 1 -1.7451 2.8554 -8.7715 41 1 2.1412 4.4937 -5.5070 42 1 3.4145 3.6694 -6.4589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115130859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:49 Heat of formation + Delta-G solvation = -140.627103 kcal Electronic energy + Delta-G solvation = -27412.432504 eV Core-core repulsion = 22978.987511 eV Total energy + Delta-G solvation = -4433.444993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.47742 -47.96527 -47.91060 -40.30493 -38.60017 -35.92812 -34.57516 -32.68103 -31.02184 -30.32121 -27.37829 -27.18973 -25.58943 -23.81075 -22.92700 -21.43645 -20.49548 -19.73058 -19.30722 -18.92526 -18.82761 -17.60613 -16.94778 -16.56208 -16.33114 -15.99670 -15.42176 -14.83430 -14.74727 -14.53251 -14.32460 -14.18458 -14.05925 -13.98685 -13.66358 -13.40218 -13.28955 -13.20518 -12.78949 -12.54910 -12.25927 -12.06097 -11.65457 -11.54765 -11.52171 -11.31953 -11.09363 -11.00166 -10.88017 -10.47515 -10.23936 -10.16830 -9.86436 -9.79360 -9.20967 -8.77131 -8.40689 -6.84321 -5.84828 -3.21890 2.37229 2.47452 2.95792 3.35221 3.41350 3.43907 3.53019 3.65367 3.73786 4.21494 4.25725 4.41101 4.43184 4.49757 4.79983 4.94562 5.07234 5.09834 5.18833 5.32733 5.33192 5.38931 5.46928 5.52334 5.71340 5.78350 5.80024 5.85921 6.03796 6.09676 6.19305 6.47210 6.65307 6.72549 6.85198 7.31014 7.45279 7.50329 7.68567 8.13180 8.17755 9.06901 9.69229 10.48614 11.30345 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.002352 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.867169 B =11899.522732 C =12114.976933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C -0.112 4.112 4 H 0.109 0.891 5 C -0.153 4.153 6 C 0.454 3.546 7 F -0.184 7.184 8 F -0.183 7.183 9 F -0.178 7.178 10 C 0.528 3.472 11 O -0.534 6.534 12 N -0.694 5.694 13 C 0.099 3.901 14 H 0.132 0.868 15 C -0.182 4.182 16 H 0.101 0.899 17 C 0.189 3.811 18 N -0.591 5.591 19 C -0.232 4.232 20 H 0.075 0.925 21 C -0.001 4.001 22 N -0.911 5.911 23 Si 0.913 3.087 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.156 3.844 28 C -0.184 4.184 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.399 0.601 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.255 0.745 41 H 0.027 0.973 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -6.430 21.553 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C -0.133 4.133 4 H 0.127 0.873 5 C -0.191 4.191 6 C 0.400 3.600 7 F -0.165 7.165 8 F -0.165 7.165 9 F -0.160 7.160 10 C 0.313 3.687 11 O -0.410 6.410 12 N -0.342 5.342 13 C -0.006 4.006 14 H 0.149 0.851 15 C -0.203 4.203 16 H 0.119 0.881 17 C 0.063 3.937 18 N -0.315 5.315 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.556 5.556 23 Si 0.743 3.257 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.029 3.971 28 C -0.205 4.205 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.233 0.767 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.386 -5.767 21.400 23.065 hybrid contribution 0.429 -0.684 -0.773 1.118 sum 6.815 -6.451 20.627 22.661 Atomic orbital electron populations 1.21873 0.94649 1.02349 1.02615 1.21881 0.97633 0.93210 1.04412 1.21355 1.02837 0.96859 0.92290 0.87253 1.22774 1.05292 1.02083 0.88931 1.20587 0.76015 0.77002 0.86434 1.93181 1.30703 1.96307 1.96349 1.93201 1.91599 1.76023 1.55640 1.93128 1.86556 1.40027 1.96271 1.20066 0.81084 0.83359 0.84159 1.90738 1.32950 1.30661 1.86662 1.45319 1.50724 1.32328 1.05832 1.21808 1.01934 0.97452 0.79454 0.85081 1.24715 0.99541 0.98527 0.97559 0.88132 1.20956 0.90105 0.95415 0.87202 1.45141 1.21015 1.64038 1.01283 1.18991 0.92859 1.44779 0.79346 0.90693 1.25036 0.95184 1.01404 0.98328 1.69922 0.96835 1.54756 1.34093 0.86049 0.77524 0.77333 0.84840 1.20288 1.21593 1.21552 1.21113 0.93947 0.92717 0.89309 1.24326 0.94488 1.03869 0.97791 0.87979 0.91979 0.92287 0.92077 0.90679 0.89217 0.86417 0.85857 0.76662 0.89983 0.95370 0.93505 0.95535 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.16 37.16 0.34 -1.03 16 2 C -0.13 -1.00 5.12 -26.73 -0.14 -1.14 16 3 C -0.11 -0.93 2.39 -91.78 -0.22 -1.15 16 4 H 0.11 0.73 7.53 -51.93 -0.39 0.34 16 5 C -0.15 -1.24 3.89 -26.73 -0.10 -1.34 16 6 C 0.45 3.68 3.09 37.16 0.11 3.80 16 7 F -0.18 -1.56 16.47 2.25 0.04 -1.53 16 8 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 9 F -0.18 -1.48 13.94 2.25 0.03 -1.44 16 10 C 0.53 6.38 5.93 -10.99 -0.07 6.32 16 11 O -0.53 -8.53 15.60 5.55 0.09 -8.44 16 12 N -0.69 -8.32 5.55 -53.81 -0.30 -8.62 16 13 C 0.10 1.58 6.01 -67.93 -0.41 1.17 16 14 H 0.13 2.39 7.43 -51.93 -0.39 2.00 16 15 C -0.18 -3.33 7.03 -89.22 -0.63 -3.95 16 16 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 17 C 0.19 4.50 5.62 -2.41 -0.01 4.48 16 18 N -0.59 -14.94 3.36 -168.86 -0.57 -15.51 16 19 C -0.23 -6.37 10.33 -15.06 -0.16 -6.53 16 20 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 21 C 0.00 -0.04 5.41 -17.43 -0.09 -0.14 16 22 N -0.91 -26.53 11.10 55.49 0.62 -25.92 16 23 Si 0.91 21.66 29.56 -169.99 -5.02 16.63 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 C 0.16 3.20 7.06 -2.41 -0.02 3.19 16 28 C -0.18 -3.09 7.03 -89.22 -0.63 -3.72 16 29 H 0.10 1.50 8.14 -51.92 -0.42 1.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 5.98 -51.93 -0.31 0.18 16 32 H 0.06 0.66 7.40 -51.93 -0.38 0.28 16 33 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 34 H 0.09 0.62 5.56 -51.93 -0.29 0.33 16 35 H 0.12 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.12 1.03 6.10 -51.93 -0.32 0.71 16 37 H 0.40 3.67 8.61 -40.82 -0.35 3.32 16 38 H 0.08 2.17 6.86 -51.93 -0.36 1.81 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -31.24 348.77 -7.54 -38.77 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.70 Total: 2.47 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.01 Total: -0.05 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.25 Total: -50.05 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.11 Total: -4.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.24 -7.54 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115130859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.854 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds