Wall clock time and date at job start Tue Mar 31 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 H 1.08995 * 109.46421 * 179.05175 * 3 2 1 5 5 C 1.52998 * 109.47180 * 59.05792 * 3 2 1 6 6 C 1.52998 * 109.47166 * 63.63127 * 5 3 2 7 7 F 1.39898 * 109.47285 * 53.31615 * 6 5 3 8 8 F 1.39909 * 109.47027 * 173.31295 * 6 5 3 9 9 F 1.39898 * 109.47283 * 293.31246 * 6 5 3 10 10 C 1.50692 * 109.47106 * 299.05443 * 3 2 1 11 11 O 1.21283 * 119.99943 * 112.85081 * 10 3 2 12 12 N 1.34778 * 120.00188 * 292.84954 * 10 3 2 13 13 C 1.46499 * 119.99977 * 185.03598 * 12 10 3 14 14 H 1.09000 * 115.49584 * 9.62117 * 13 12 10 15 15 C 1.53005 * 117.44374 * 224.23972 * 13 12 10 16 16 H 1.09002 * 119.53850 * 4.11689 * 15 13 12 17 17 C 1.54385 * 118.90001 * 161.25714 * 15 13 12 18 18 N 1.48145 * 104.62061 * 87.20918 * 17 15 13 19 19 C 1.36937 * 127.83876 * 140.38714 * 18 17 15 20 20 H 1.07994 * 120.00228 * 201.40825 * 19 18 17 21 21 C 1.38818 * 119.99888 * 21.41298 * 19 18 17 22 22 N 1.31623 * 119.99714 * 6.50989 * 21 19 18 23 23 Si 1.86794 * 119.99999 * 186.51220 * 21 19 18 24 24 H 1.48497 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46787 * 120.00096 * 23 21 19 26 26 H 1.48501 * 109.47075 * 239.99541 * 23 21 19 27 27 C 1.48151 * 104.32329 * 320.41615 * 18 17 15 28 28 C 1.53002 * 117.44340 * 154.99983 * 13 12 10 29 29 H 1.09008 * 119.53654 * 355.88126 * 28 13 12 30 30 H 1.09007 * 109.47130 * 184.30922 * 1 2 3 31 31 H 1.08996 * 109.47579 * 304.31208 * 1 2 3 32 32 H 1.09004 * 109.47065 * 64.31499 * 1 2 3 33 33 H 1.08998 * 109.47292 * 239.99746 * 2 1 3 34 34 H 1.09004 * 109.46556 * 119.99680 * 2 1 3 35 35 H 1.09000 * 109.47280 * 183.63405 * 5 3 2 36 36 H 1.09001 * 109.47139 * 303.63541 * 5 3 2 37 37 H 0.96997 * 119.99770 * 5.03644 * 12 10 3 38 38 H 1.09001 * 110.40195 * 205.99667 * 17 15 13 39 39 H 1.09003 * 110.40614 * 328.30624 * 17 15 13 40 40 H 0.97003 * 119.99655 * 180.02562 * 22 21 19 41 41 H 1.08998 * 110.40218 * 280.80066 * 27 18 17 42 42 H 1.09005 * 110.40475 * 158.36965 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0170 5 6 1.5107 2.1706 1.2372 6 6 2.0745 1.5109 2.4973 7 9 3.4690 1.4460 2.4056 8 9 1.7156 2.2658 3.6193 9 9 1.5545 0.2179 2.6193 10 6 1.5569 2.1461 -1.2420 11 8 0.7552 3.0518 -1.1528 12 7 2.0157 1.7689 -2.4518 13 6 1.6323 2.5226 -3.6481 14 1 1.1128 3.4629 -3.4638 15 6 1.2221 1.7210 -4.8852 16 1 1.1604 0.6344 -4.8253 17 6 0.4099 2.4239 -5.9941 18 7 1.4318 3.0340 -6.8763 19 6 1.4260 3.1062 -8.2438 20 1 2.3513 3.2542 -8.7807 21 6 0.2307 2.9891 -8.9399 22 7 -0.9099 2.9376 -8.2851 23 14 0.2410 2.9047 -10.8059 24 1 1.6403 2.9814 -11.2972 25 1 -0.3683 1.6241 -11.2468 26 1 -0.5408 4.0405 -11.3572 27 6 2.4618 3.5477 -5.9435 28 6 2.5749 2.4620 -4.8518 29 1 3.5211 1.9274 -4.7671 30 1 -0.3634 -1.0248 0.0772 31 1 -0.3634 0.5793 0.8488 32 1 -0.3633 0.4454 -0.9262 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8203 3.2152 1.2043 36 1 0.4222 2.1146 1.2538 37 1 2.5997 0.9985 -2.5304 38 1 -0.1853 1.6976 -6.5476 39 1 -0.2326 3.1929 -5.5653 40 1 -1.7451 2.8554 -8.7715 41 1 2.1412 4.4937 -5.5070 42 1 3.4145 3.6694 -6.4589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115130859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:47 Heat of formation + Delta-G solvation = -159.952889 kcal Electronic energy + Delta-G solvation = -27413.270533 eV Core-core repulsion = 22978.987511 eV Total energy + Delta-G solvation = -4434.283022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.13094 -48.62486 -48.56260 -41.38947 -40.04147 -36.75974 -36.09201 -34.32316 -32.14137 -31.63913 -28.94176 -28.32813 -27.31394 -24.45689 -24.12825 -22.79817 -21.94632 -20.92584 -20.64855 -19.58792 -19.52382 -18.86344 -18.31726 -17.68945 -17.39226 -16.78066 -16.74536 -16.15844 -15.70478 -15.45638 -15.30409 -15.08273 -14.95697 -14.88022 -14.75294 -14.66770 -14.63850 -14.16144 -13.91936 -13.75238 -13.37222 -13.22836 -13.18099 -12.89259 -12.77162 -12.68141 -12.28944 -12.14526 -12.00744 -11.98052 -11.92242 -11.73209 -11.64101 -10.92553 -10.80264 -10.67168 -9.72528 -8.87455 -7.94912 -5.34500 1.46479 1.46859 1.48724 1.58465 1.63322 2.02435 2.47205 2.82494 2.85593 2.96933 3.10128 3.27845 3.50115 3.62256 3.73785 3.79315 3.85440 3.92239 4.09958 4.15558 4.29938 4.40177 4.43900 4.52492 4.56680 4.75871 4.82542 4.84072 4.89957 5.00178 5.10902 5.14745 5.27914 5.38296 5.40511 5.46096 5.54999 5.60878 6.16470 6.48818 6.98568 7.18091 7.65155 8.45935 9.20160 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.002352 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.867169 B =11899.522732 C =12114.976933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.101 4.101 4 H 0.137 0.863 5 C -0.152 4.152 6 C 0.462 3.538 7 F -0.183 7.183 8 F -0.189 7.189 9 F -0.178 7.178 10 C 0.528 3.472 11 O -0.576 6.576 12 N -0.680 5.680 13 C 0.124 3.876 14 H 0.105 0.895 15 C -0.189 4.189 16 H 0.121 0.879 17 C 0.194 3.806 18 N -0.616 5.616 19 C -0.243 4.243 20 H 0.082 0.918 21 C -0.061 4.061 22 N -0.947 5.947 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.147 3.853 28 C -0.159 4.159 29 H 0.141 0.859 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.419 0.581 38 H 0.047 0.953 39 H -0.006 1.006 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -7.851 22.592 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C -0.122 4.122 4 H 0.155 0.845 5 C -0.191 4.191 6 C 0.408 3.592 7 F -0.164 7.164 8 F -0.171 7.171 9 F -0.159 7.159 10 C 0.316 3.684 11 O -0.454 6.454 12 N -0.330 5.330 13 C 0.016 3.984 14 H 0.123 0.877 15 C -0.210 4.210 16 H 0.139 0.861 17 C 0.068 3.932 18 N -0.340 5.340 19 C -0.372 4.372 20 H 0.100 0.900 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.022 3.978 28 C -0.180 4.180 29 H 0.159 0.841 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.917 -7.213 22.473 25.231 hybrid contribution -0.360 -0.178 -1.024 1.100 sum 8.557 -7.392 21.449 24.247 Atomic orbital electron populations 1.21884 0.95890 1.02674 1.01237 1.21919 0.96456 0.92602 1.05822 1.21358 1.04285 0.96717 0.89873 0.84522 1.22749 1.05094 1.02240 0.88996 1.20445 0.75915 0.76840 0.86038 1.93184 1.30647 1.96298 1.96319 1.93192 1.91677 1.76243 1.55977 1.93131 1.86563 1.39961 1.96249 1.20746 0.80018 0.82680 0.84964 1.90736 1.34803 1.32667 1.87238 1.45119 1.50857 1.32571 1.04471 1.21303 1.00533 0.96232 0.80317 0.87694 1.24375 0.99559 0.99241 0.97858 0.86113 1.20649 0.90230 0.93929 0.88387 1.45452 1.22184 1.64970 1.01422 1.19402 0.93167 1.43744 0.80861 0.90012 1.25905 0.94867 1.01789 1.02942 1.70122 0.97250 1.56369 1.35641 0.84976 0.78047 0.76758 0.79294 1.18571 1.21672 1.21925 1.21272 0.93183 0.93529 0.89822 1.24220 0.95304 1.01729 0.96740 0.84143 0.91050 0.92349 0.94596 0.89142 0.87908 0.86352 0.86360 0.74343 0.93488 0.98805 0.94090 0.96406 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.16 71.98 0.66 -1.87 16 2 C -0.13 -1.54 5.12 30.60 0.16 -1.38 16 3 C -0.10 -1.39 2.39 -11.54 -0.03 -1.42 16 4 H 0.14 1.22 7.53 -2.39 -0.02 1.20 16 5 C -0.15 -2.20 3.89 30.59 0.12 -2.08 16 6 C 0.46 6.45 3.09 71.98 0.22 6.67 16 7 F -0.18 -2.58 16.47 44.97 0.74 -1.84 16 8 F -0.19 -3.14 17.32 44.97 0.78 -2.36 16 9 F -0.18 -2.49 13.94 44.97 0.63 -1.87 16 10 C 0.53 11.78 5.93 87.65 0.52 12.30 16 11 O -0.58 -18.18 15.60 -3.04 -0.05 -18.23 16 12 N -0.68 -14.49 5.55 -442.53 -2.46 -16.94 16 13 C 0.12 3.77 6.01 44.99 0.27 4.04 16 14 H 0.11 3.88 7.43 -2.39 -0.02 3.86 16 15 C -0.19 -6.78 7.03 -9.89 -0.07 -6.85 16 16 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 17 C 0.19 9.61 5.62 86.53 0.49 10.10 16 18 N -0.62 -31.70 3.36 -688.15 -2.31 -34.01 16 19 C -0.24 -13.53 10.33 84.03 0.87 -12.66 16 20 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 21 C -0.06 -3.45 5.41 84.86 0.46 -2.99 16 22 N -0.95 -57.42 11.10 21.65 0.24 -57.18 16 23 Si 0.98 45.18 29.56 68.60 2.03 47.20 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 C 0.15 5.97 7.06 86.53 0.61 6.58 16 28 C -0.16 -4.99 7.03 -9.89 -0.07 -5.06 16 29 H 0.14 3.43 8.14 -2.38 -0.02 3.41 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.06 0.92 5.98 -2.39 -0.01 0.90 16 32 H 0.03 0.75 7.40 -2.38 -0.02 0.73 16 33 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 34 H 0.10 1.03 5.56 -2.38 -0.01 1.02 16 35 H 0.12 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.12 1.86 6.10 -2.39 -0.01 1.84 16 37 H 0.42 5.89 8.61 -92.71 -0.80 5.09 16 38 H 0.05 2.61 6.86 -2.39 -0.02 2.60 16 39 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -70.76 348.77 4.07 -66.70 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.26 Total: 13.16 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.21 Total: 5.37 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.53 Total: -108.13 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 2.15 Total: -6.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.76 4.07 -66.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115130859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.255 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds